GTRB - ECOLI - GREMLIN Contacts

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GTRB - Bactoprenol glucosyl transferase homolog from prophage CPS-53

UniProt:	P77293	Sequences: MKISLVVPVFNEEEAIPIFYKTVREFEELKSYEVEIVFINDGSKDATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHATGDAIIPIDVDLQDPIEVIPHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMSRDVVENIKLMPERNLFMKGILSWVGGKTDIVEYVRAERIAGDTKFNGWKLWNLALEGITSFSTFPLRIWTYIGLVVASVAFIYGAWMILDTIIFGNAVRGYPSLLVSILFLGGIQMIGIGVLGEYIGRTYIETKKRPKYIIKRVKK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG14132
Length:	306 (265)
Sequences:	20639 (17003)
Seq/√Len:	1044.5

ECOLI - GTRB ARNC PGAC YAIP YIBD WCAA WCAE WBBL
BACSU - YKCC CSBB YKOT YDAM GGAA EPSH CGED EPSJ TUAG GGAB EPSE YFNE SPSA YWDF TAGF
HALSA - Q9HQQ6 Q9HSB1 Q9HQP4 Q9HSC8 Q9HR08 Q9HQP8 Q9HQP3 Q9HNK3
SULSO - Q97TY0 Q97W52 Q97TZ0 Q97UK7 Q7LXY2 Q97YM4 Q97WK7 Q7LXF7 Q97X05 Q97YG5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
13_E	46_A	4.316	1.00
161_R	165_E	4.155	1.00
40_N	65_S	3.979	1.00
46_A	49_S	2.969	1.00
4_S	35_E	2.759	1.00
9_V	47_T	2.748	1.00
12_E	93_V	2.741	1.00
39_I	79_G	2.715	1.00
87_A	109_W	2.707	1.00
113_A	189_D	2.704	1.00
48_E	65_S	2.676	1.00
4_S	85_G	2.656	1.00
35_E	62_V	2.643	1.00
48_E	52_N	2.571	1.00
40_N	43_S	2.484	1.00
176_F	180_I	2.482	1.00
104_H	193_Y	2.410	1.00
66_F	78_A	2.381	1.00
163_V	186_G	2.280	1.00
51_I	63_P	2.259	1.00
17_P	21_K	2.225	1.00
108_K	111_A	2.206	1.00
108_K	189_D	2.202	1.00
17_P	50_I	2.180	1.00
89_I	158_L	2.175	1.00
30_K	103_P	2.173	1.00
48_E	63_P	2.164	1.00
21_K	54_L	2.145	1.00
38_F	51_I	2.113	1.00
17_P	53_A	2.105	1.00
6_V	79_G	2.068	1.00
109_W	158_L	2.056	1.00
108_K	191_V	2.027	1.00
72_K	76_L	2.026	1.00
52_N	65_S	1.952	1.00
78_A	82_H	1.908	1.00
87_A	158_L	1.902	1.00
20_Y	54_L	1.875	1.00
114_D	160_S	1.826	1.00
114_D	186_G	1.796	1.00
166_N	186_G	1.793	1.00
76_L	90_P	1.763	1.00
104_H	107_E	1.758	1.00
11_N	44_K	1.754	1.00
3_I	106_I	1.754	1.00
64_L	82_H	1.752	1.00
105_L	158_L	1.700	1.00
50_I	53_A	1.682	1.00
4_S	37_V	1.668	1.00
4_S	83_A	1.656	1.00
162_D	166_N	1.632	1.00
166_N	184_V	1.631	1.00
35_E	85_G	1.625	1.00
80_L	164_V	1.624	1.00
13_E	50_I	1.616	1.00
46_A	50_I	1.611	1.00
11_N	43_S	1.603	1.00
24_R	58_D	1.582	1.00
7_V	19_F	1.574	1.00
89_I	102_I	1.570	1.00
21_K	25_E	1.551	1.00
97_D	101_V	1.543	1.00
49_S	53_A	1.541	1.00
10_F	69_N	1.534	1.00
39_I	75_A	1.525	1.00
87_A	106_I	1.493	1.00
17_P	54_L	1.467	1.00
62_V	82_H	1.457	1.00
78_A	81_D	1.453	1.00
100_E	104_H	1.448	1.00
109_W	160_S	1.442	1.00
3_I	102_I	1.437	1.00
80_L	88_I	1.435	1.00
41_D	69_N	1.426	1.00
115_M	188_T	1.415	1.00
9_V	93_V	1.389	1.00
22_T	97_D	1.389	1.00
18_I	96_Q	1.389	1.00
35_E	84_T	1.377	1.00
76_L	92_D	1.353	1.00
40_N	48_E	1.349	1.00
107_E	110_Q	1.316	1.00
20_Y	38_F	1.311	1.00
121_S	194_V	1.308	1.00
20_Y	58_D	1.302	1.00
91_I	97_D	1.297	1.00
22_T	100_E	1.287	1.00
115_M	181_L	1.277	1.00
70_F	74_P	1.264	1.00
9_V	12_E	1.250	1.00
12_E	15_A	1.245	1.00
83_A	161_R	1.244	1.00
18_I	21_K	1.243	1.00
7_V	36_I	1.242	1.00
9_V	38_F	1.235	1.00
103_P	107_E	1.213	1.00
89_I	101_V	1.213	1.00
209_K	212_N	1.206	1.00
64_L	78_A	1.206	1.00
31_S	106_I	1.199	1.00
88_I	161_R	1.191	1.00
29_L	32_Y	1.170	1.00
119_K	192_E	1.170	1.00
50_I	54_L	1.166	1.00
163_V	181_L	1.152	1.00
120_R	155_D	1.145	1.00
49_S	52_N	1.134	1.00
72_K	92_D	1.129	1.00
37_V	62_V	1.117	1.00
107_E	111_A	1.113	1.00
162_D	165_E	1.109	1.00
22_T	96_Q	1.104	1.00
29_L	33_E	1.100	1.00
5_L	23_V	1.096	1.00
8_P	75_A	1.093	1.00
24_R	60_L	1.092	1.00
160_S	163_V	1.071	1.00
25_E	99_I	1.058	1.00
55_A	61_V	1.045	1.00
108_K	116_V	1.035	1.00
18_I	199_I	1.030	1.00
72_K	154_G	1.015	1.00
73_E	173_R	1.013	1.00
6_V	39_I	0.999	1.00
118_A	156_F	0.998	1.00
67_T	70_F	0.997	1.00
18_I	22_T	0.986	1.00
52_N	55_A	0.983	1.00
41_D	71_G	0.972	1.00
109_W	116_V	0.972	1.00
86_D	162_D	0.971	1.00
81_D	168_K	0.963	1.00
80_L	90_P	0.962	1.00
105_L	118_A	0.955	1.00
88_I	164_V	0.948	1.00
20_Y	24_R	0.946	1.00
5_L	89_I	0.936	1.00
127_G	130_K	0.934	1.00
16_I	50_I	0.929	1.00
30_K	33_E	0.929	1.00
101_V	156_F	0.923	1.00
86_D	160_S	0.919	1.00
97_D	195_R	0.915	1.00
31_S	34_V	0.914	1.00
7_V	93_V	0.908	1.00
62_V	84_T	0.896	1.00
34_V	60_L	0.896	1.00
191_V	194_V	0.896	1.00
66_F	75_A	0.895	1.00
108_K	112_G	0.894	1.00
128_R	131_R	0.881	1.00
215_L	219_T	0.879	1.00
19_F	23_V	0.873	1.00
5_L	102_I	0.872	1.00
77_F	81_D	0.868	1.00
87_A	160_S	0.865	1.00
8_P	41_D	0.864	1.00
139_K	143_K	0.864	1.00
128_R	132_K	0.851	1.00
38_F	61_V	0.850	1.00
67_T	78_A	0.849	1.00
80_L	83_A	0.840	1.00
34_V	102_I	0.836	1.00
176_F	179_G	0.835	1.00
119_K	190_I	0.832	1.00
72_K	173_R	0.831	1.00
19_F	22_T	0.830	1.00
246_W	250_D	0.830	1.00
101_V	105_L	0.828	1.00
37_V	83_A	0.827	1.00
8_P	93_V	0.826	1.00
114_D	187_K	0.822	1.00
105_L	109_W	0.822	1.00
139_K	142_N	0.820	1.00
233_G	237_A	0.820	1.00
258_V	261_Y	0.810	1.00
171_P	176_F	0.808	1.00
133_T	136_W	0.805	1.00
172_E	175_L	0.803	1.00
66_F	70_F	0.800	1.00
259_R	262_P	0.798	1.00
240_A	270_F	0.797	1.00
36_I	61_V	0.797	1.00
159_M	164_V	0.795	1.00
48_E	51_I	0.795	1.00
152_N	157_R	0.794	1.00
220_S	224_F	0.793	1.00
20_Y	61_V	0.784	1.00
106_I	110_Q	0.775	1.00
100_E	103_P	0.774	1.00
22_T	196_A	0.774	1.00
95_L	198_R	0.774	1.00
104_H	108_K	0.772	1.00
104_H	191_V	0.770	1.00
79_G	83_A	0.767	1.00
29_L	34_V	0.761	1.00
73_E	77_F	0.759	1.00
203_T	206_N	0.759	1.00
130_K	133_T	0.758	1.00
16_I	51_I	0.757	1.00
224_F	227_R	0.757	1.00
214_A	217_G	0.754	1.00
20_Y	36_I	0.752	1.00
83_A	88_I	0.750	1.00
23_V	36_I	0.749	1.00
105_L	194_V	0.749	1.00
214_A	218_I	0.746	1.00
167_I	181_L	0.745	1.00
15_A	199_I	0.740	1.00
101_V	118_A	0.740	1.00
11_N	47_T	0.737	1.00
43_S	47_T	0.732	1.00
24_R	61_V	0.731	1.00
209_K	213_L	0.729	1.00
9_V	16_I	0.726	1.00
51_I	55_A	0.725	1.00
114_D	162_D	0.724	1.00
22_T	25_E	0.722	1.00
54_L	58_D	0.720	1.00
138_Y	142_N	0.719	1.00
16_I	47_T	0.717	1.00
55_A	59_P	0.717	1.00
213_L	217_G	0.716	1.00
29_L	103_P	0.715	1.00
210_L	213_L	0.715	1.00
207_G	210_L	0.713	1.00
181_L	186_G	0.713	1.00
132_K	136_W	0.710	1.00
37_V	82_H	0.709	1.00
260_G	263_S	0.707	1.00
132_K	135_E	0.706	1.00
7_V	23_V	0.703	1.00
81_D	169_L	0.702	1.00
237_A	240_A	0.702	1.00
8_P	76_L	0.699	1.00
105_L	156_F	0.698	1.00
222_S	225_P	0.697	1.00
159_M	181_L	0.697	1.00
166_N	169_L	0.696	1.00
55_A	58_D	0.693	1.00
211_W	215_L	0.693	1.00
42_G	66_F	0.693	1.00
106_I	158_L	0.692	1.00
101_V	104_H	0.691	1.00
4_S	161_R	0.691	1.00
30_K	34_V	0.690	1.00
6_V	83_A	0.688	1.00
24_R	54_L	0.685	1.00
189_D	192_E	0.684	1.00
7_V	38_F	0.683	1.00
15_A	19_F	0.683	1.00
136_W	139_K	0.683	1.00
216_E	219_T	0.679	1.00
76_L	173_R	0.677	1.00
37_V	79_G	0.675	1.00
72_K	90_P	0.674	1.00
13_E	49_S	0.674	1.00
7_V	91_I	0.671	1.00
109_W	113_A	0.671	1.00
108_K	113_A	0.663	1.00
256_N	259_R	0.662	1.00
12_E	72_K	0.661	1.00
52_N	63_P	0.661	1.00
231_Y	235_V	0.660	1.00
269_L	272_G	0.659	1.00
10_F	41_D	0.659	1.00
41_D	70_F	0.657	1.00
19_F	91_I	0.654	1.00
9_V	51_I	0.648	1.00
12_E	16_I	0.642	1.00
114_D	163_V	0.641	1.00
23_V	91_I	0.640	1.00
66_F	69_N	0.637	1.00
97_D	156_F	0.637	1.00
13_E	45_D	0.634	1.00
3_I	158_L	0.634	1.00
225_P	228_I	0.633	1.00
201_G	204_K	0.633	1.00
10_F	44_K	0.628	1.00
262_P	266_V	0.628	1.00
171_P	180_I	0.624	1.00
159_M	177_M	0.621	1.00
227_R	231_Y	0.619	1.00
257_A	262_P	0.617	1.00
213_L	216_E	0.616	1.00
238_S	242_I	0.614	1.00
157_R	178_K	0.613	1.00
58_D	61_V	0.612	1.00
160_S	186_G	0.611	1.00
10_F	42_G	0.610	1.00
195_R	198_R	0.608	1.00
240_A	244_G	0.607	1.00
19_F	93_V	0.606	1.00
80_L	169_L	0.604	1.00
233_G	240_A	0.604	1.00
13_E	17_P	0.603	1.00
257_A	260_G	0.603	1.00
41_D	92_D	0.601	1.00
154_G	157_R	0.600	1.00
72_K	75_A	0.599	1.00
41_D	66_F	0.598	1.00
89_I	105_L	0.597	1.00
210_L	214_A	0.596	1.00
229_W	233_G	0.595	1.00
41_D	75_A	0.594	1.00
255_G	258_V	0.591	1.00
137_F	141_H	0.588	1.00
96_Q	123_R	0.586	1.00
98_P	197_E	0.585	1.00
177_M	181_L	0.585	1.00
11_N	40_N	0.583	1.00
44_K	47_T	0.583	1.00
67_T	74_P	0.583	1.00
35_E	83_A	0.581	1.00
131_R	135_E	0.578	1.00
148_K	187_K	0.578	1.00
133_T	137_F	0.577	1.00
55_A	63_P	0.577	1.00
23_V	97_D	0.577	1.00
245_A	249_L	0.577	1.00
138_Y	141_H	0.575	1.00
225_P	233_G	0.575	1.00
21_K	24_R	0.575	1.00
105_L	116_V	0.571	1.00
11_N	45_D	0.570	1.00
8_P	72_K	0.570	1.00
98_P	101_V	0.569	1.00
12_E	47_T	0.568	1.00
230_T	233_G	0.567	1.00
86_D	161_R	0.566	1.00
260_G	264_L	0.566	1.00
163_V	167_I	0.565	1.00
164_V	177_M	0.564	1.00
95_L	196_A	0.562	1.00
255_G	260_G	0.561	1.00
163_V	166_N	0.561	1.00
112_G	187_K	0.560	1.00
130_K	134_A	0.560	1.00
89_I	97_D	0.558	1.00
237_A	241_F	0.557	1.00
267_S	272_G	0.556	1.00
12_E	92_D	0.555	1.00
254_F	257_A	0.554	1.00
254_F	258_V	0.554	1.00
62_V	65_S	0.553	1.00
85_G	161_R	0.552	1.00
172_E	178_K	0.551	1.00
113_A	187_K	0.550	1.00
141_H	145_S	0.547	1.00
16_I	93_V	0.545	1.00
22_T	95_L	0.545	1.00
175_L	179_G	0.544	1.00
257_A	261_Y	0.543	1.00
178_K	188_T	0.538	1.00
117_L	120_R	0.537	1.00
152_N	178_K	0.537	1.00
16_I	38_F	0.536	1.00
30_K	100_E	0.536	1.00
167_I	184_V	0.535	1.00
33_E	60_L	0.535	1.00
142_N	146_N	0.534	1.00
164_V	169_L	0.531	1.00
98_P	195_R	0.531	1.00
182_S	188_T	0.528	1.00
75_A	78_A	0.527	1.00
18_I	198_R	0.527	1.00
198_R	201_G	0.526	1.00
19_F	95_L	0.523	1.00
140_L	144_I	0.522	1.00
149_I	152_N	0.521	1.00
262_P	265_L	0.520	1.00
39_I	78_A	0.520	1.00
13_E	47_T	0.520	1.00
267_S	271_L	0.520	1.00
172_E	176_F	0.520	1.00
75_A	79_G	0.519	1.00
233_G	239_V	0.519	1.00
16_I	54_L	0.519	1.00
264_L	267_S	0.517	1.00
76_L	154_G	0.516	1.00
244_G	266_V	0.515	1.00
117_L	152_N	0.515	1.00
234_L	237_A	0.513	1.00
261_Y	264_L	0.513	1.00
223_T	227_R	0.513	1.00
102_I	158_L	0.511	1.00
71_G	94_D	0.510	1.00
14_E	50_I	0.509	1.00
212_N	215_L	0.508	1.00
95_L	155_D	0.506	1.00
74_P	78_A	0.506	1.00
116_V	191_V	0.506	1.00
15_A	18_I	0.504	1.00
208_W	212_N	0.504	1.00
51_I	61_V	0.501	1.00
208_W	211_W	0.501	1.00
241_F	248_I	0.500	1.00
207_G	211_W	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3bcvA	2	0.5621	100	0.41	Contact Map
2z86A	2	0.7843	100	0.411	Contact Map
4p02A	1	0.9673	100	0.417	Contact Map
3l7iA	4	0.1013	100	0.43	Contact Map
2d7iA	1	0.9314	100	0.436	Contact Map
1qg8A	1	0.7059	100	0.437	Contact Map
4fixA	3	0.9641	100	0.441	Contact Map
1xhbA	1	0.9052	100	0.447	Contact Map
2bo4A	4	0.9346	100	0.452	Contact Map
3ckjA	2	0.8072	100	0.466	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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