GREMLIN Database
RSXG - Electron transport complex subunit RsxG
UniProt: P77285 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13937
Length: 206 (187)
Sequences: 2198 (1684)
Seq/√Len: 123.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
133_K136_L3.1871.00
58_A61_Q2.7471.00
111_D117_L2.7171.00
139_S143_T2.6751.00
111_D115_T2.5951.00
93_E105_Q2.5311.00
40_L44_A2.5031.00
99_G126_E2.4721.00
39_S43_K2.4651.00
102_G125_H2.4141.00
36_E39_S2.3651.00
134_I176_T2.3491.00
36_E40_L2.3411.00
106_L183_A2.3311.00
143_T146_A2.1371.00
161_K165_G2.1281.00
27_N31_K2.0901.00
108_V187_A2.0841.00
133_K170_F1.9751.00
37_Q40_L1.9631.00
136_L143_T1.9441.00
110_A191_A1.8781.00
31_K35_A1.8751.00
170_F177_P1.8601.00
35_A38_A1.8401.00
32_T35_A1.8041.00
141_W145_F1.7321.00
102_G124_H1.7211.00
124_H135_E1.6691.00
28_Q31_K1.6651.00
35_A39_S1.6271.00
120_R142_I1.6221.00
160_V177_P1.5971.00
25_A29_M1.5701.00
163_D178_R1.5571.00
6_R10_I1.5341.00
33_T36_E1.5231.00
78_V90_A1.5171.00
99_G104_I1.5071.00
73_K96_A1.4821.00
97_P179_A1.4811.00
42_Q77_R1.4631.00
62_S82_K1.4571.00
185_K189_L1.4481.00
46_F79_Y1.4191.00
48_Q120_R1.4151.00
33_T37_Q1.4071.00
97_P183_A1.3971.00
7_K11_T1.3931.00
157_H166_D1.3931.00
49_V117_L1.3911.00
38_A123_E1.3731.00
106_L121_V1.3671.00
82_K86_K1.3661.00
159_A166_D1.3621.00
83_Q88_V1.3551.00
50_L81_A1.3411.00
94_A187_A1.3321.00
29_M33_T1.3291.00
164_G168_D1.3281.00
110_A187_A1.3171.00
105_Q123_E1.3081.00
82_K87_P1.3011.00
104_I134_I1.2971.00
10_I14_L1.2861.00
169_Q177_P1.2721.00
94_A108_V1.2711.00
67_T70_E1.2671.00
151_S154_D1.2671.00
132_D176_T1.2621.00
140_D143_T1.2380.99
152_G155_D1.2340.99
89_A109_G1.2320.99
181_V185_K1.2290.99
109_G117_L1.2230.99
29_M32_T1.2120.99
49_V91_V1.2040.99
56_N84_D1.1960.99
32_T36_E1.1950.99
161_K164_G1.1920.99
98_D182_N1.1910.99
80_I90_A1.1750.99
23_T27_N1.1610.99
47_D52_A1.1600.99
89_A117_L1.1310.99
39_S42_Q1.1270.99
94_A106_L1.1180.99
9_G13_A1.1050.99
161_K169_Q1.1000.99
111_D147_G1.0910.99
62_S65_L1.0850.99
50_L91_V1.0840.99
77_R93_E1.0830.99
110_A188_G1.0750.98
160_V181_V1.0620.98
104_I135_E1.0610.98
160_V175_I1.0520.98
11_T23_T1.0360.98
182_N186_R1.0330.98
124_H132_D1.0120.98
82_K85_D1.0000.98
110_A150_I0.9990.98
121_V183_A0.9980.98
3_K7_K0.9960.98
43_K47_D0.9960.98
150_I158_W0.9790.97
175_I178_R0.9750.97
63_C67_T0.9690.97
165_G178_R0.9690.97
20_T23_T0.9660.97
83_Q86_K0.9600.97
163_D166_D0.9530.97
97_P103_A0.9480.97
148_K166_D0.9450.97
87_P90_A0.9440.97
57_N62_S0.9410.96
38_A105_Q0.9370.96
158_W167_F0.9370.96
104_I121_V0.9110.96
40_L43_K0.9100.96
49_V109_G0.9090.96
189_L193_T0.9020.96
135_E142_I0.8910.95
141_W170_F0.8790.95
92_L191_A0.8760.95
8_H11_T0.8740.95
113_N117_L0.8740.95
46_F107_L0.8740.95
42_Q46_F0.8700.95
37_Q41_Q0.8630.94
119_T142_I0.8580.94
175_I179_A0.8520.94
132_D136_L0.8440.94
121_V124_H0.8420.94
189_L192_Q0.8380.93
72_G75_E0.8280.93
130_L160_V0.8260.93
144_H164_G0.8160.92
25_A28_Q0.8140.92
66_V69_P0.8100.92
58_A62_S0.8070.92
46_F91_V0.7990.92
23_T34_I0.7920.91
3_K6_R0.7880.91
42_Q93_E0.7860.91
56_N83_Q0.7860.91
184_V187_A0.7860.91
80_I87_P0.7780.91
124_H128_P0.7700.90
141_W144_H0.7590.90
174_T178_R0.7520.89
8_H16_A0.7520.89
105_Q122_T0.7500.89
120_R135_E0.7450.89
55_Y59_L0.7440.89
50_L89_A0.7430.89
90_A191_A0.7340.88
119_T145_F0.7310.88
62_S80_I0.7280.87
109_G118_G0.7270.87
151_S155_D0.7250.87
20_T27_N0.7230.87
154_D157_H0.7220.87
56_N59_L0.7160.87
165_G168_D0.7130.86
81_A89_A0.7120.86
16_A19_S0.7110.86
91_V109_G0.7100.86
42_Q45_L0.7060.86
156_A159_A0.7060.86
81_A91_V0.7050.86
186_R189_L0.7040.86
170_F176_T0.7020.86
160_V178_R0.6960.85
144_H177_P0.6950.85
64_Y67_T0.6890.84
148_K158_W0.6880.84
113_N149_K0.6880.84
37_Q183_A0.6840.84
59_L62_S0.6820.84
136_L170_F0.6800.84
144_H170_F0.6770.83
87_P112_F0.6760.83
56_N62_S0.6750.83
119_T172_G0.6710.83
59_L63_C0.6690.83
7_K92_L0.6680.83
8_H19_S0.6640.82
11_T92_L0.6610.82
141_W180_V0.6610.82
60_A63_C0.6600.82
9_G100_Y0.6540.81
3_K19_S0.6480.81
74_G186_R0.6460.80
45_L109_G0.6450.80
28_Q32_T0.6450.80
30_T45_L0.6440.80
65_L68_A0.6420.80
8_H20_T0.6400.80
134_I145_F0.6380.80
24_A27_N0.6370.80
104_I126_E0.6310.79
121_V184_V0.6260.78
15_F19_S0.6110.77
134_I177_P0.6100.77
77_R80_I0.6090.76
57_N60_A0.6090.76
90_A183_A0.6080.76
78_V191_A0.6060.76
132_D135_E0.6030.76
115_T149_K0.5980.75
13_A16_A0.5980.75
78_V92_L0.5970.75
108_V184_V0.5960.75
41_Q169_Q0.5960.75
92_L187_A0.5960.75
133_K162_K0.5950.75
130_L175_I0.5930.75
105_Q125_H0.5920.74
56_N63_C0.5890.74
19_S49_V0.5890.74
17_A21_G0.5860.74
38_A41_Q0.5830.73
53_E56_N0.5780.73
159_A182_N0.5770.73
57_N66_V0.5770.73
100_Y107_L0.5770.73
44_A48_Q0.5750.72
169_Q178_R0.5740.72
12_L27_N0.5730.72
4_T7_K0.5710.72
5_I9_G0.5680.71
16_A37_Q0.5670.71
150_I166_D0.5640.71
65_L74_G0.5620.71
62_S66_V0.5620.71
170_F173_A0.5590.70
41_Q45_L0.5580.70
53_E81_A0.5580.70
11_T191_A0.5580.70
97_P101_S0.5580.70
82_K140_D0.5530.69
121_V180_V0.5530.69
100_Y181_V0.5520.69
172_G188_G0.5500.69
82_K88_V0.5490.69
121_V132_D0.5490.69
9_G12_L0.5480.69
104_I179_A0.5480.69
135_E169_Q0.5470.69
94_A183_A0.5450.68
17_A20_T0.5440.68
145_F181_V0.5430.68
133_K140_D0.5420.68
173_A176_T0.5400.68
20_T24_A0.5400.68
141_W177_P0.5400.68
102_G177_P0.5390.67
16_A104_I0.5380.67
139_S142_I0.5370.67
98_D186_R0.5370.67
124_H134_I0.5350.67
93_E107_L0.5340.67
114_G191_A0.5310.66
60_A67_T0.5280.66
8_H91_V0.5270.66
167_F177_P0.5250.65
12_L34_I0.5220.65
124_H141_W0.5180.64
98_D103_A0.5150.64
130_L162_K0.5150.64
91_V190_Y0.5110.63
12_L183_A0.5100.63
16_A50_L0.5090.63
87_P147_G0.5070.63
7_K19_S0.5050.62
11_T14_L0.5040.62
26_I96_A0.5020.62
49_V171_T0.5020.62
142_I146_A0.5000.62
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4p6vC 1 0.9612 100 0.246 Contact Map
3lwxA 1 0.8204 100 0.389 Contact Map
4xa7A 1 0.8204 100 0.403 Contact Map
3dczA 1 0.6553 100 0.405 Contact Map
3o6uA 1 0.5437 99.7 0.658 Contact Map
2kzxA 1 0.5388 99.4 0.728 Contact Map
3hrdB 2 0.5485 12.9 0.95 Contact Map
2kv5A 1 0.1602 7.2 0.955 Contact Map
2mc7A 1 0.1456 5.9 0.957 Contact Map
2mc8A 1 0.4563 5.2 0.958 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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