YDFJ - ECOLI - GREMLIN Contacts

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YDFJ - Putative inner membrane metabolite transport protein YdfJ

UniProt:	P77228	Sequences: MDFQLYSLGAALVFHEIFFPESSTAMALILAMGTYGAGYVARIVGAFIFGKMGDRIGRKKVLFITITMMGICTTLIGVLPTYAQIGVFAPILLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAIWAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKPAPAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSILGFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHNCAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYPIAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13822
Length:	427 (362)
Sequences:	156859 (114205)
Seq/√Len:	6002.5

ECOLI - YDFJ NANT PROP GALP HSRA XYLE ARAE YAAU EXUT YAJR UIDB YDIN YDJK YGCS ENTS YDJE UHPT MELB RHMT YICJ YIHO MDTD NUPG YAGG XAPB YDHC MDTM YQCE YEGT GLPT YEBQ MDFA YJJL MDTL YIHN UHPC LACY YDIM SHIA MDTH AMPG YIHP KGTP ARAJ MHPT GUDP GARP MDTG BCR YHJE TSGA YJHB YBJJ CYNX YDHP EMRY DGOT FUCP SOTB NEPI YHJX YDEE FSR YNFM EMRD YCAD EMRB NARU LPLT SETA YHHS SETC YGAY NARK YEAN HCAT SETB YFCJ YJIJ DTPA
BACSU - CSBC YNCC YFIG YWTG IOLT IOLF YITG YUBD YKUC YQGE CSBX YXAM ARAE YFIS YNAJ GUDP YQJV YCNB YVKA YVQJ EXUT YBFB MMR NAIP YCEJ YFHI YJBB YUXJ YYBO YWOD BBEX YVMA YOAB GLCP YYAJ TCRB YBCL YFKF YFMI YFKL YHCA YWFA YCXA YTTB YYCB YYBF YHJO YDGK GUTA PBUE GLPT YTBD YWBF NARK YJMB YWOG YUSP YFNC NASA LMRB YDDS BMR2 BMR1 BMR3 YDEG YXLH YFMO YXIO YDER YFIU YCLF
HALSA - O54630 Q9HPD6 Q9HSM8 Q9HS33 Q9HMR5 Q9HN67 Q9HRX5 Q9HMQ8 Q9HSK3 Q9HSE5
SULSO - Q97YL8 Q97VV2 Q97U43 Q97U99 Q97YH0 Q7LX65 Q97UY7 Q7LX71 Q97U80 Q97UR4 Q97VT2 Q97WS7 Q97VU3 Q97WR1 Q97VC8 Q97Y11 Q97YY8 Q97U98 Q97X92 Q97VB7 Q97X47 Q97VB9 Q97WT1 Q980K3 Q97ZC9 Q97U76 Q97WR9 Q97Y43 Q97UD8 Q97XW7 Q97VQ5 Q97U91 Q97V89 Q97X02 Q97X63 Q97YG2 Q97Y15 Q97VD1 Q97Z36 Q97Z07 Q97UJ4 Q97Z05 Q97YI4 Q97UK1 Q97WP8 Q97WJ7 Q97U71 Q97YW8 Q97UY6 Q97XG8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
80_P	92_L	3.963	1.00
75_L	96_L	3.830	1.00
68_M	103_G	3.734	1.00
58_R	117_E	3.613	1.00
77_G	168_L	3.312	1.00
41_A	98_I	3.311	1.00
72_C	96_L	3.018	1.00
65_T	106_A	2.873	1.00
49_F	106_A	2.858	1.00
375_W	378_I	2.845	1.00
70_G	174_M	2.838	1.00
119_A	127_I	2.810	1.00
91_I	95_T	2.790	1.00
54_D	343_F	2.767	1.00
125_G	274_D	2.683	1.00
81_T	91_I	2.673	1.00
72_C	103_G	2.574	1.00
337_F	345_R	2.543	1.00
27_A	30_L	2.513	1.00
123_K	126_I	2.465	1.00
223_F	357_A	2.464	1.00
207_G	211_Q	2.461	1.00
247_N	250_I	2.461	1.00
81_T	92_L	2.435	1.00
261_L	316_V	2.401	1.00
120_P	123_K	2.326	1.00
45_G	102_L	2.294	1.00
227_G	361_G	2.293	1.00
161_W	165_I	2.241	1.00
278_R	335_E	2.238	1.00
72_C	99_I	2.202	1.00
288_S	321_A	2.109	1.00
338_G	341_N	2.104	1.00
59_K	63_F	2.104	1.00
295_P	314_L	2.090	1.00
53_G	110_G	2.061	1.00
74_T	171_V	1.938	1.00
79_L	92_L	1.936	1.00
219_T	352_I	1.924	1.00
265_T	320_C	1.921	1.00
82_Y	94_V	1.914	1.00
309_T	313_A	1.911	1.00
179_W	183_N	1.857	1.00
79_L	96_L	1.844	1.00
57_G	60_K	1.827	1.00
72_C	100_Q	1.788	1.00
45_G	105_G	1.776	1.00
277_G	280_I	1.764	1.00
271_W	275_K	1.751	1.00
376_Y	379_A	1.748	1.00
37_A	94_V	1.741	1.00
51_K	55_R	1.722	1.00
76_I	96_L	1.701	1.00
208_S	211_Q	1.683	1.00
50_G	54_D	1.679	1.00
37_A	98_I	1.673	1.00
231_L	365_A	1.662	1.00
34_T	93_L	1.658	1.00
26_M	30_L	1.658	1.00
41_A	45_G	1.636	1.00
285_M	324_G	1.636	1.00
45_G	48_I	1.607	1.00
168_L	172_V	1.605	1.00
379_A	383_M	1.604	1.00
77_G	171_V	1.603	1.00
30_L	82_Y	1.573	1.00
26_M	82_Y	1.558	1.00
292_L	321_A	1.551	1.00
63_F	181_R	1.539	1.00
178_I	182_M	1.529	1.00
246_F	250_I	1.519	1.00
367_I	371_M	1.509	1.00
292_L	314_L	1.507	1.00
70_G	171_V	1.479	1.00
269_L	324_G	1.479	1.00
52_M	61_V	1.466	1.00
91_I	94_V	1.466	1.00
126_I	274_D	1.465	1.00
280_I	283_I	1.459	1.00
376_Y	380_I	1.454	1.00
205_P	208_S	1.451	1.00
82_Y	91_I	1.440	1.00
48_I	51_K	1.439	1.00
385_Y	389_G	1.412	1.00
60_K	63_F	1.404	1.00
165_I	168_L	1.386	1.00
162_G	165_I	1.371	1.00
19_F	22_S	1.370	1.00
60_K	64_I	1.359	1.00
375_W	379_A	1.347	1.00
309_T	312_V	1.346	1.00
279_R	283_I	1.345	1.00
56_I	61_V	1.343	1.00
258_S	319_N	1.339	1.00
241_V	251_P	1.338	1.00
65_T	103_G	1.333	1.00
116_A	124_R	1.317	1.00
92_L	96_L	1.315	1.00
144_A	256_M	1.304	1.00
68_M	72_C	1.302	1.00
52_M	56_I	1.296	1.00
40_V	359_G	1.294	1.00
270_G	274_D	1.284	1.00
57_G	61_V	1.284	1.00
64_I	68_M	1.275	1.00
70_G	175_V	1.274	1.00
230_G	358_S	1.262	1.00
380_I	384_A	1.261	1.00
294_W	298_S	1.252	1.00
54_D	344_T	1.250	1.00
261_L	265_T	1.247	1.00
272_L	276_I	1.242	1.00
265_T	268_F	1.240	1.00
203_P	206_A	1.239	1.00
204_A	207_G	1.236	1.00
208_S	341_N	1.236	1.00
28_L	370_T	1.233	1.00
76_I	93_L	1.232	1.00
53_G	58_R	1.226	1.00
74_T	78_V	1.223	1.00
117_E	342_R	1.218	1.00
115_L	131_V	1.217	1.00
377_P	380_I	1.216	1.00
268_F	271_W	1.209	1.00
19_F	23_S	1.207	1.00
121_K	124_R	1.205	1.00
239_Y	244_L	1.198	1.00
280_I	284_I	1.195	1.00
149_M	165_I	1.193	1.00
21_E	31_A	1.192	1.00
241_V	248_K	1.180	1.00
144_A	148_F	1.177	1.00
185_K	188_P	1.169	1.00
75_L	78_V	1.149	1.00
308_S	312_V	1.147	1.00
391_I	395_K	1.145	1.00
216_W	220_G	1.142	1.00
384_A	388_I	1.137	1.00
240_L	246_F	1.136	1.00
124_R	335_E	1.134	1.00
213_K	217_L	1.132	1.00
56_I	60_K	1.128	1.00
41_A	101_G	1.126	1.00
284_I	288_S	1.125	1.00
17_I	31_A	1.121	1.00
250_I	253_D	1.111	1.00
357_A	361_G	1.102	1.00
92_L	95_T	1.092	1.00
23_S	164_R	1.089	1.00
267_P	271_W	1.086	1.00
290_I	294_W	1.078	1.00
203_P	207_G	1.072	1.00
172_V	176_F	1.068	1.00
71_I	75_L	1.064	1.00
290_I	386_S	1.064	1.00
253_D	257_I	1.063	1.00
180_L	184_L	1.049	1.00
262_G	323_L	1.045	1.00
33_G	363_I	1.042	1.00
208_S	212_S	1.039	1.00
37_A	41_A	1.037	1.00
69_M	103_G	1.033	1.00
59_K	186_E	1.032	1.00
368_F	372_T	1.030	1.00
60_K	186_E	1.029	1.00
126_I	130_F	1.029	1.00
215_F	219_T	1.029	1.00
38_G	101_G	1.025	1.00
287_T	291_V	1.021	1.00
292_L	317_I	1.016	1.00
271_W	274_D	1.016	1.00
75_L	92_L	1.014	1.00
95_T	99_I	1.010	1.00
78_V	168_L	1.007	1.00
382_I	386_S	1.004	1.00
383_M	387_V	1.002	1.00
36_G	363_I	1.002	1.00
341_N	344_T	0.998	1.00
366_G	370_T	0.996	1.00
204_A	208_S	0.995	1.00
333_M	349_S	0.991	1.00
38_G	104_A	0.990	1.00
288_S	292_L	0.987	1.00
7_S	135_T	0.986	1.00
36_G	359_G	0.984	1.00
380_I	383_M	0.983	1.00
63_F	67_T	0.981	1.00
313_A	316_V	0.981	1.00
109_S	112_G	0.979	1.00
32_M	235_F	0.975	1.00
367_I	370_T	0.969	1.00
77_G	164_R	0.969	1.00
43_I	359_G	0.964	1.00
58_R	113_T	0.964	1.00
21_E	28_L	0.963	1.00
264_M	267_P	0.962	1.00
292_L	318_H	0.958	1.00
61_V	64_I	0.953	1.00
16_E	150_F	0.950	1.00
29_I	370_T	0.944	1.00
222_R	349_S	0.942	1.00
297_L	379_A	0.942	1.00
43_I	351_E	0.942	1.00
32_M	36_G	0.940	1.00
285_M	325_L	0.940	1.00
239_Y	243_T	0.939	1.00
160_A	164_R	0.935	1.00
295_P	298_S	0.932	1.00
264_M	268_F	0.931	1.00
240_L	311_M	0.930	1.00
213_K	216_W	0.929	1.00
339_C	342_R	0.918	1.00
33_G	37_A	0.918	1.00
54_D	58_R	0.917	1.00
293_A	297_L	0.914	1.00
97_R	101_G	0.908	1.00
313_A	317_I	0.903	1.00
64_I	67_T	0.900	1.00
377_P	381_M	0.899	1.00
23_S	163_W	0.898	1.00
50_G	343_F	0.897	1.00
47_F	51_K	0.897	1.00
327_A	331_I	0.893	1.00
210_F	216_W	0.891	1.00
290_I	389_G	0.885	1.00
283_I	286_N	0.885	1.00
283_I	287_T	0.884	1.00
126_I	271_W	0.884	1.00
147_A	252_T	0.883	1.00
46_A	350_K	0.880	1.00
378_I	381_M	0.879	1.00
285_M	321_A	0.874	1.00
202_K	205_P	0.873	1.00
378_I	382_I	0.872	1.00
220_G	224_G	0.871	1.00
260_I	264_M	0.869	1.00
80_P	164_R	0.869	1.00
30_L	94_V	0.867	1.00
182_M	185_K	0.865	1.00
192_K	195_D	0.855	1.00
276_I	281_P	0.851	1.00
284_I	287_T	0.851	1.00
180_L	183_N	0.850	1.00
277_G	281_P	0.846	1.00
171_V	175_V	0.845	1.00
390_L	394_L	0.844	1.00
324_G	328_L	0.843	1.00
386_S	390_L	0.840	1.00
145_I	148_F	0.840	1.00
38_G	42_R	0.839	1.00
21_E	26_M	0.837	1.00
273_S	328_L	0.834	1.00
74_T	168_L	0.833	1.00
29_I	33_G	0.827	1.00
58_R	186_E	0.825	1.00
226_A	353_G	0.821	1.00
179_W	182_M	0.821	1.00
148_F	160_A	0.821	1.00
57_G	186_E	0.821	1.00
276_I	280_I	0.820	1.00
347_A	351_E	0.820	1.00
114_M	184_L	0.820	1.00
172_V	175_V	0.817	1.00
73_T	171_V	0.817	1.00
119_A	123_K	0.817	1.00
387_V	391_I	0.815	1.00
73_T	100_Q	0.813	1.00
299_I	314_L	0.812	1.00
20_P	163_W	0.811	1.00
67_T	70_G	0.811	1.00
73_T	170_S	0.807	1.00
249_A	253_D	0.807	1.00
225_Q	325_L	0.807	1.00
62_L	114_M	0.807	1.00
30_L	33_G	0.805	1.00
165_I	169_A	0.805	1.00
292_L	295_P	0.801	1.00
207_G	210_F	0.800	1.00
45_G	49_F	0.798	1.00
69_M	174_M	0.798	1.00
287_T	290_I	0.795	1.00
281_P	284_I	0.794	1.00
202_K	207_G	0.793	1.00
310_I	313_A	0.791	1.00
235_F	366_G	0.790	1.00
18_F	22_S	0.788	1.00
222_R	226_A	0.788	1.00
67_T	71_I	0.788	1.00
9_G	12_L	0.787	1.00
376_Y	383_M	0.786	1.00
261_L	264_M	0.785	1.00
291_V	295_P	0.781	1.00
381_M	385_Y	0.778	1.00
265_T	269_L	0.775	1.00
140_L	260_I	0.775	1.00
16_E	20_P	0.775	1.00
141_S	144_A	0.774	1.00
312_V	316_V	0.773	1.00
128_S	331_I	0.773	1.00
256_M	260_I	0.772	1.00
116_A	342_R	0.767	1.00
139_T	259_S	0.765	1.00
76_I	100_Q	0.765	1.00
217_L	395_K	0.764	1.00
114_M	118_Y	0.763	1.00
214_S	217_L	0.762	1.00
65_T	110_G	0.761	1.00
181_R	185_K	0.759	1.00
12_L	166_P	0.755	1.00
202_K	208_S	0.754	1.00
168_L	171_V	0.751	1.00
375_W	389_G	0.750	1.00
334_A	346_M	0.748	1.00
49_F	105_G	0.744	1.00
122_G	126_I	0.742	1.00
268_F	272_L	0.741	1.00
70_G	74_T	0.740	1.00
136_N	262_G	0.736	1.00
116_A	128_S	0.734	1.00
161_W	164_R	0.734	1.00
299_I	310_I	0.734	1.00
97_R	100_Q	0.733	1.00
26_M	31_A	0.731	1.00
10_A	42_R	0.728	1.00
286_N	325_L	0.728	1.00
379_A	382_I	0.728	1.00
97_R	108_I	0.725	1.00
317_I	321_A	0.724	1.00
44_V	47_F	0.720	1.00
150_F	166_P	0.720	1.00
33_G	94_V	0.719	1.00
165_I	172_V	0.716	1.00
78_V	92_L	0.716	1.00
240_L	244_L	0.713	1.00
81_T	164_R	0.713	1.00
109_S	113_T	0.713	1.00
219_T	349_S	0.710	1.00
34_T	94_V	0.709	1.00
257_I	312_V	0.708	1.00
372_T	376_Y	0.708	1.00
51_K	344_T	0.707	1.00
254_A	312_V	0.706	1.00
363_I	367_I	0.705	1.00
378_I	385_Y	0.704	1.00
364_L	367_I	0.703	1.00
259_S	263_F	0.702	1.00
133_M	267_P	0.700	1.00
136_N	263_F	0.700	1.00
331_I	335_E	0.699	1.00
178_I	181_R	0.697	1.00
236_L	315_I	0.695	1.00
378_I	389_G	0.695	1.00
18_F	21_E	0.695	1.00
378_I	388_I	0.694	1.00
356_I	360_F	0.690	1.00
76_I	79_L	0.690	1.00
40_V	43_I	0.689	1.00
69_M	104_A	0.686	1.00
208_S	340_K	0.686	1.00
219_T	348_I	0.683	1.00
159_L	249_A	0.682	1.00
368_F	371_M	0.680	1.00
95_T	98_I	0.678	1.00
38_G	97_R	0.676	1.00
209_M	212_S	0.676	1.00
222_R	353_G	0.674	1.00
191_E	195_D	0.672	1.00
301_V	309_T	0.671	1.00
286_N	389_G	0.671	1.00
388_I	392_S	0.670	1.00
147_A	253_D	0.670	1.00
143_T	256_M	0.670	1.00
116_A	334_A	0.667	1.00
374_S	378_I	0.667	1.00
106_A	110_G	0.667	1.00
16_E	166_P	0.666	1.00
294_W	297_L	0.666	1.00
289_A	292_L	0.662	1.00
32_M	366_G	0.662	1.00
289_A	321_A	0.660	1.00
148_F	253_D	0.659	1.00
63_F	182_M	0.658	1.00
212_S	216_W	0.657	1.00
115_L	127_I	0.656	1.00
59_K	185_K	0.656	1.00
44_V	48_I	0.654	1.00
42_R	354_G	0.654	1.00
246_F	254_A	0.650	1.00
238_G	242_Q	0.649	1.00
134_G	138_G	0.647	1.00
169_A	172_V	0.647	1.00
147_A	256_M	0.646	1.00
112_G	131_V	0.646	1.00
290_I	390_L	0.646	1.00
314_L	317_I	0.646	1.00
164_R	168_L	0.643	1.00
319_N	323_L	0.643	1.00
9_G	69_M	0.641	1.00
375_W	382_I	0.641	1.00
76_I	167_F	0.640	1.00
250_I	254_A	0.639	1.00
105_G	109_S	0.638	1.00
295_P	299_I	0.637	1.00
283_I	290_I	0.634	1.00
49_F	109_S	0.632	1.00
381_M	384_A	0.632	1.00
35_Y	234_T	0.632	1.00
283_I	393_A	0.630	1.00
29_I	363_I	0.630	1.00
196_S	201_A	0.629	1.00
312_V	315_I	0.629	1.00
246_F	308_S	0.625	1.00
62_L	111_A	0.625	1.00
215_F	337_F	0.625	1.00
238_G	241_V	0.625	1.00
297_L	382_I	0.624	1.00
80_P	91_I	0.623	1.00
216_W	219_T	0.623	1.00
228_N	385_Y	0.622	1.00
272_L	281_P	0.620	1.00
30_L	34_T	0.618	1.00
133_M	136_N	0.615	1.00
20_P	24_T	0.614	1.00
265_T	323_L	0.614	1.00
392_S	395_K	0.613	1.00
310_I	314_L	0.611	1.00
43_I	354_G	0.611	1.00
369_C	372_T	0.611	1.00
27_A	370_T	0.611	1.00
46_A	347_A	0.610	1.00
39_Y	358_S	0.610	1.00
133_M	263_F	0.610	1.00
53_G	61_V	0.609	1.00
7_S	10_A	0.608	1.00
257_I	261_L	0.606	1.00
214_S	336_M	0.605	1.00
159_L	162_G	0.604	1.00
71_I	74_T	0.603	1.00
359_G	363_I	0.601	1.00
212_S	341_N	0.601	1.00
205_P	209_M	0.598	1.00
258_S	315_I	0.597	1.00
36_G	362_P	0.596	1.00
391_I	394_L	0.596	1.00
334_A	342_R	0.596	1.00
378_I	393_A	0.596	1.00
224_G	388_I	0.596	1.00
15_H	146_W	0.594	1.00
73_T	97_R	0.594	1.00
240_L	254_A	0.594	1.00
8_L	170_S	0.593	1.00
219_T	223_F	0.592	1.00
118_Y	188_P	0.590	1.00
285_M	328_L	0.588	1.00
69_M	107_E	0.587	1.00
128_S	334_A	0.586	1.00
66_I	177_A	0.586	1.00
138_G	142_A	0.583	1.00
250_I	308_S	0.583	1.00
269_L	272_L	0.581	1.00
76_I	97_R	0.581	1.00
206_A	209_M	0.581	1.00
34_T	82_Y	0.580	1.00
124_R	334_A	0.580	1.00
218_A	349_S	0.580	1.00
235_F	365_A	0.579	1.00
146_W	166_P	0.577	1.00
9_G	170_S	0.574	1.00
360_F	364_L	0.574	1.00
53_G	343_F	0.573	1.00
28_L	242_Q	0.573	1.00
234_T	237_A	0.572	1.00
8_L	12_L	0.570	1.00
173_V	176_F	0.570	1.00
283_I	389_G	0.570	1.00
170_S	173_V	0.567	1.00
220_G	223_F	0.567	1.00
107_E	181_R	0.566	1.00
393_A	396_M	0.564	1.00
94_V	97_R	0.564	1.00
46_A	351_E	0.564	1.00
36_G	40_V	0.564	1.00
125_G	331_I	0.562	1.00
206_A	341_N	0.562	1.00
249_A	252_T	0.562	1.00
79_L	82_Y	0.562	1.00
223_F	352_I	0.560	1.00
50_G	347_A	0.560	1.00
206_A	344_T	0.560	1.00
254_A	308_S	0.558	1.00
16_E	19_F	0.557	1.00
39_Y	362_P	0.557	1.00
254_A	257_I	0.555	1.00
149_M	161_W	0.554	1.00
49_F	52_M	0.554	1.00
96_L	99_I	0.553	1.00
385_Y	388_I	0.553	1.00
142_A	146_W	0.550	1.00
111_A	131_V	0.549	1.00
191_E	194_N	0.549	1.00
357_A	360_F	0.549	1.00
143_T	255_L	0.547	1.00
287_T	389_G	0.546	1.00
144_A	147_A	0.545	1.00
258_S	262_G	0.543	1.00
348_I	352_I	0.543	1.00
9_G	97_R	0.542	1.00
30_L	91_I	0.542	1.00
327_A	330_N	0.541	1.00
46_A	354_G	0.540	1.00
332_T	336_M	0.539	1.00
235_F	238_G	0.538	1.00
162_G	166_P	0.534	1.00
294_W	382_I	0.533	1.00
140_L	256_M	0.532	1.00
254_A	258_S	0.531	1.00
63_F	66_I	0.529	1.00
132_A	136_N	0.528	1.00
223_F	227_G	0.528	1.00
117_E	187_S	0.528	1.00
209_M	345_R	0.526	1.00
125_G	270_G	0.519	1.00
133_M	137_C	0.518	1.00
20_P	23_S	0.517	1.00
343_F	347_A	0.516	1.00
126_I	129_S	0.516	1.00
96_L	100_Q	0.515	1.00
375_W	388_I	0.514	1.00
112_G	128_S	0.514	1.00
11_A	139_T	0.511	1.00
65_T	107_E	0.511	1.00
297_L	383_M	0.510	1.00
369_C	374_S	0.509	1.00
8_L	142_A	0.506	1.00
268_F	320_C	0.505	1.00
28_L	369_C	0.505	1.00
389_G	392_S	0.505	1.00
215_F	345_R	0.503	1.00
226_A	230_G	0.503	1.00
50_G	53_G	0.502	1.00
272_L	275_K	0.502	1.00
49_F	61_V	0.501	1.00
374_S	377_P	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4j05A	3	0.9087	100	0.181	Contact Map
4pypA	1	0.8852	100	0.191	Contact Map
3wdoA	1	0.9321	100	0.206	Contact Map
1pw4A	1	0.897	100	0.214	Contact Map
4zw9A	1	0.9297	100	0.233	Contact Map
4gc0A	1	0.9344	100	0.241	Contact Map
4ldsA	2	0.897	100	0.245	Contact Map
3o7qA	1	0.8923	100	0.249	Contact Map
2gfpA	2	0.8618	100	0.26	Contact Map
2cfqA	1	0.9251	100	0.262	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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