GREMLIN Database
RSXB - Electron transport complex subunit RsxB
UniProt: P77223 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13934
Length: 192 (174)
Sequences: 1311 (811)
Seq/√Len: 61.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
41_D58_R5.3111.00
79_E83_L4.3021.00
55_P59_P4.0731.00
130_D133_V3.9021.00
113_D116_N3.6141.00
60_Y73_R3.5751.00
36_V65_S3.4931.00
43_I88_L3.4691.00
62_E66_C3.3111.00
38_E58_R3.1971.00
27_R30_A2.9551.00
70_K94_Q2.8431.00
128_P152_L2.7361.00
113_D163_S2.6121.00
64_I89_L2.4771.00
109_V113_D2.4551.00
40_I64_I2.4421.00
134_G140_H2.4251.00
133_V143_M2.3111.00
54_Y69_E2.2831.00
60_Y64_I2.2771.00
97_D168_A2.1821.00
69_E73_R1.8971.00
37_V65_S1.8571.00
154_V164_L1.8271.00
97_D100_A1.8241.00
40_I65_S1.7941.00
143_M146_L1.7560.99
135_A141_T1.6910.99
60_Y76_P1.6720.99
24_Y28_R1.5640.99
129_V148_T1.5340.98
111_V165_Q1.5330.98
14_L18_F1.4630.98
5_W9_A1.4520.98
97_D101_Q1.4380.98
84_K87_E1.4330.98
58_R62_E1.4310.98
80_A84_K1.4190.97
13_L17_A1.4180.97
54_Y63_A1.3670.97
126_A156_P1.3640.97
103_I120_C1.3410.96
118_I159_T1.3330.96
77_G81_V1.3290.96
37_V62_E1.3190.96
151_N164_L1.3180.96
171_P175_K1.3110.96
173_S177_D1.2990.96
41_D46_Q1.2480.95
113_D122_K1.2200.94
135_A140_H1.1730.93
12_S16_L1.1690.93
105_P108_M1.1610.92
43_I81_V1.1600.92
20_A24_Y1.1400.92
125_Q128_P1.1300.91
98_G167_V1.1270.91
105_P151_N1.1210.91
56_G59_P1.1000.90
173_S176_W1.0990.90
60_Y75_A1.0830.89
39_K42_E1.0810.89
140_H162_I1.0540.88
73_R97_D1.0490.88
71_I91_V1.0480.88
64_I75_A1.0450.88
49_C52_C1.0440.88
108_M151_N1.0420.87
104_T159_T1.0260.87
26_S29_F1.0260.87
67_N91_V1.0100.86
8_V104_T1.0010.85
169_E173_S1.0000.85
33_D38_E0.9930.85
6_I9_A0.9890.85
77_G82_M0.9790.84
79_E95_P0.9700.83
24_Y29_F0.9670.83
51_Q151_N0.9670.83
57_C61_A0.9650.83
116_N163_S0.9610.83
78_G82_M0.9610.83
83_L93_P0.9580.83
71_I89_L0.9530.82
33_D37_V0.9460.82
132_I140_H0.9340.81
45_P77_G0.9270.80
60_Y67_N0.9260.80
64_I73_R0.9170.80
28_R37_V0.9130.79
124_I133_V0.9110.79
149_G164_L0.9100.79
51_Q56_G0.9090.79
175_K178_L0.9060.79
32_E35_P0.8990.78
129_V146_L0.8910.78
83_L87_E0.8890.78
64_I69_E0.8890.78
124_I132_I0.8870.77
71_I82_M0.8840.77
81_V84_K0.8510.74
168_A173_S0.8460.74
77_G130_D0.8370.73
17_A21_I0.8350.73
166_P169_E0.8330.73
114_E141_T0.8210.72
110_A120_C0.8190.72
36_V39_K0.8090.71
81_V85_I0.7940.69
116_N122_K0.7840.68
37_V66_C0.7840.68
149_G152_L0.7770.68
124_I142_V0.7690.67
172_D176_W0.7660.66
172_D178_L0.7640.66
34_D39_K0.7500.65
98_G101_Q0.7490.65
59_P62_E0.7450.64
171_P176_W0.7430.64
78_G81_V0.7400.64
132_I142_V0.7380.64
57_C74_C0.7380.64
63_A69_E0.7370.63
18_F21_I0.7340.63
45_P76_P0.7340.63
82_M85_I0.7260.62
86_A93_P0.7250.62
41_D59_P0.7210.62
144_S167_V0.7210.62
50_G56_G0.7170.61
174_W178_L0.7040.60
110_A114_E0.7010.60
21_I107_R0.6990.59
70_K91_V0.6990.59
6_I26_S0.6940.59
51_Q152_L0.6940.59
109_V115_N0.6920.59
61_A74_C0.6890.58
100_A155_D0.6850.58
79_E86_A0.6840.58
50_G116_N0.6830.58
45_P139_M0.6820.58
38_E42_E0.6820.58
82_M93_P0.6800.57
75_A96_L0.6750.57
116_N138_A0.6720.56
51_Q76_P0.6710.56
126_A129_V0.6700.56
50_G113_D0.6690.56
11_V122_K0.6680.56
60_Y71_I0.6650.56
83_L95_P0.6610.55
38_E87_E0.6600.55
37_V41_D0.6590.55
151_N155_D0.6580.55
43_I70_K0.6570.55
9_A13_L0.6540.54
35_P39_K0.6530.54
174_W177_D0.6510.54
170_T176_W0.6490.54
16_L24_Y0.6490.54
31_V34_D0.6490.54
122_K156_P0.6440.53
173_S178_L0.6420.53
115_N163_S0.6400.53
57_C119_G0.6390.53
7_A12_S0.6300.52
12_S28_R0.6290.52
133_V146_L0.6270.51
102_E120_C0.6260.51
152_L155_D0.6250.51
82_M101_Q0.6180.50
136_T175_K0.6170.50
49_C61_A0.6170.50
11_V18_F0.6150.50
53_G57_C0.6130.50
35_P38_E0.6130.50
164_L176_W0.6110.49
21_I30_A0.6100.49
18_F24_Y0.6030.49
7_A166_P0.6010.48
44_L81_V0.5970.48
18_F23_G0.5920.47
38_E62_E0.5900.47
94_Q97_D0.5900.47
125_Q156_P0.5850.47
49_C57_C0.5830.46
7_A26_S0.5790.46
5_W160_H0.5790.46
8_V11_V0.5780.46
52_C61_A0.5770.46
102_E109_V0.5760.46
137_R141_T0.5730.45
36_V88_L0.5690.45
52_C57_C0.5670.45
78_G130_D0.5660.44
124_I134_G0.5650.44
8_V21_I0.5600.44
61_A119_G0.5600.44
112_I130_D0.5600.44
22_L29_F0.5550.43
145_D167_V0.5550.43
23_G29_F0.5540.43
84_K171_P0.5530.43
91_V94_Q0.5480.42
50_G61_A0.5470.42
51_Q122_K0.5460.42
63_A162_I0.5450.42
76_P128_P0.5440.42
132_I162_I0.5430.42
17_A66_C0.5430.42
50_G136_T0.5390.41
153_C157_C0.5370.41
150_C157_C0.5370.41
147_C153_C0.5370.41
147_C150_C0.5370.41
147_C157_C0.5370.41
127_C147_C0.5370.41
127_C150_C0.5370.41
127_C153_C0.5370.41
150_C153_C0.5370.41
123_C150_C0.5370.41
127_C157_C0.5370.41
123_C147_C0.5370.41
117_C123_C0.5370.41
117_C127_C0.5370.41
117_C147_C0.5370.41
117_C150_C0.5370.41
117_C153_C0.5370.41
117_C157_C0.5370.41
123_C127_C0.5370.41
123_C153_C0.5370.41
123_C157_C0.5370.41
6_I10_A0.5350.41
74_C119_G0.5340.41
76_P129_V0.5310.41
26_S30_A0.5300.40
116_N136_T0.5300.40
164_L168_A0.5290.40
43_I77_G0.5290.40
126_A152_L0.5290.40
17_A130_D0.5240.40
86_A132_I0.5230.40
38_E41_D0.5200.39
169_E176_W0.5170.39
73_R76_P0.5140.39
53_G61_A0.5120.38
75_A85_I0.5100.38
18_F30_A0.5100.38
35_P56_G0.5090.38
13_L160_H0.5090.38
40_I88_L0.5090.38
152_L156_P0.5070.38
110_A115_N0.5070.38
7_A18_F0.5070.38
22_L34_D0.5060.38
34_D43_I0.5050.38
7_A10_A0.5020.37
124_I139_M0.5010.37
103_I109_V0.5000.37
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4djdC 2 0.8229 99.5 0.752 Contact Map
4omfG 2 0.7656 99.4 0.761 Contact Map
1gteA 4 0.8802 99.4 0.761 Contact Map
2h9aA 1 0.5208 99.4 0.765 Contact Map
3gyxB 1 0.4375 99.3 0.776 Contact Map
1q16B 2 0.8021 99.3 0.776 Contact Map
3c8yA 1 0.9792 99.3 0.777 Contact Map
1jnrB 1 0.4375 99.3 0.778 Contact Map
1hfeL 2 0.5625 99.3 0.778 Contact Map
2fgoA 1 0.3906 99.3 0.779 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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