GREMLIN Database
RSXE - Electron transport complex subunit RsxE
UniProt: P77179 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13938
Length: 231 (173)
Sequences: 2666 (1241)
Seq/√Len: 94.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
27_P138_A4.9481.00
42_G139_T4.6941.00
54_L128_A3.7661.00
50_T132_F3.5291.00
87_I91_A3.3771.00
123_G126_L3.0991.00
54_L124_P3.0421.00
8_I133_S3.0251.00
35_A158_F2.8371.00
84_Q95_Y2.6781.00
10_Q15_N2.6491.00
19_L141_A2.6421.00
51_L79_V2.3031.00
60_R68_R2.3021.00
50_T131_G2.2821.00
50_T128_A2.2491.00
147_S157_L2.1931.00
52_T79_V2.1271.00
35_A143_F2.0921.00
9_V14_K2.0581.00
46_T139_T2.0491.00
35_A146_G1.9901.00
17_S134_I1.9121.00
4_I129_L1.8591.00
159_D162_D1.8141.00
88_N95_Y1.8011.00
3_E126_L1.7871.00
53_N131_G1.7261.00
92_F96_Q1.6981.00
58_T124_P1.6631.00
86_L90_Y1.6511.00
147_S151_I1.5831.00
12_L140_C1.5421.00
118_F130_D1.5041.00
127_S131_G1.4761.00
54_L58_T1.4541.00
5_K9_V1.4501.00
44_A87_I1.4491.00
40_G94_L1.4421.00
6_D10_Q1.4381.00
59_L75_I1.4100.99
139_T143_F1.4090.99
7_V126_L1.3900.99
10_Q14_K1.3880.99
59_L63_T1.3750.99
52_T115_A1.3440.99
15_N21_Q1.3350.99
63_T71_I1.2830.99
38_A42_G1.2730.99
151_I157_L1.2710.99
7_V10_Q1.2690.99
125_A129_L1.2660.99
39_L143_F1.2600.99
156_T162_D1.2510.99
84_Q88_N1.2330.98
129_L133_S1.2230.98
4_I125_A1.2190.98
46_T136_M1.2190.98
53_N118_F1.1880.98
6_D14_K1.1570.98
32_T38_A1.1440.98
51_L55_T1.1370.97
48_V83_V1.1360.97
167_S170_K1.1210.97
21_Q67_I1.1140.97
73_V112_V1.1140.97
39_L158_F1.1040.97
61_H65_A1.0970.97
3_E6_D1.0820.97
82_A86_L1.0810.97
32_T142_M1.0670.96
17_S110_I1.0580.96
48_V105_I1.0530.96
88_N92_F1.0530.96
44_A76_I1.0460.96
45_T139_T1.0410.96
84_Q102_I1.0350.96
122_K127_S1.0230.95
11_G133_S1.0230.95
17_S21_Q1.0140.95
76_I115_A0.9970.95
51_L54_L0.9700.94
4_I126_L0.9640.94
6_D9_V0.9480.93
8_I129_L0.9420.93
27_P45_T0.9400.93
72_Y120_A0.9210.92
136_M140_C0.9190.92
18_A28_L0.8990.91
42_G143_F0.8960.91
35_A38_A0.8910.91
37_N87_I0.8840.90
11_G134_I0.8840.90
7_V129_L0.8810.90
68_R116_E0.8770.90
83_V112_V0.8730.90
34_T37_N0.8620.89
46_T135_G0.8610.89
58_T62_W0.8570.89
18_A141_A0.8550.89
7_V118_F0.8540.89
43_L47_L0.8490.88
143_F147_S0.8460.88
143_F158_F0.8450.88
24_G110_I0.8450.88
28_L145_L0.8440.88
55_T79_V0.8440.88
23_L113_G0.8410.88
165_L172_L0.8330.87
18_A25_L0.8290.87
124_P127_S0.8270.87
38_A139_T0.8160.86
38_A143_F0.8090.86
155_G176_I0.8080.86
45_T138_A0.8070.86
93_G97_S0.8030.85
102_I106_V0.8010.85
29_L168_W0.8010.85
158_F161_A0.7990.85
154_N159_D0.7970.85
25_L45_T0.7910.84
132_F136_M0.7910.84
4_I83_V0.7910.84
56_I75_I0.7840.84
68_R119_A0.7820.84
8_I132_F0.7740.83
81_S85_M0.7710.83
21_Q107_T0.7630.82
164_L173_R0.7590.82
53_N127_S0.7570.82
11_G130_D0.7550.82
55_T75_I0.7530.81
169_A172_L0.7500.81
168_W172_L0.7500.81
21_Q121_K0.7490.81
13_W19_L0.7440.81
56_I115_A0.7370.80
16_N137_G0.7370.80
63_T66_E0.7320.80
42_G135_G0.7310.79
38_A146_G0.7300.79
121_K130_D0.7230.79
25_L145_L0.7170.78
73_V106_V0.7160.78
98_L113_G0.7110.78
162_D165_L0.7040.77
24_G108_N0.7030.77
168_W174_V0.7020.77
173_R177_F0.6990.76
100_I103_P0.6980.76
105_I109_C0.6980.76
172_L175_E0.6940.76
148_L174_V0.6930.76
42_G46_T0.6900.75
71_I112_V0.6880.75
18_A138_A0.6850.75
31_V142_M0.6820.75
49_L113_G0.6800.74
117_A120_A0.6780.74
84_Q100_I0.6760.74
39_L139_T0.6750.74
107_T141_A0.6660.73
49_L135_G0.6650.73
21_Q117_A0.6650.73
117_A130_D0.6630.73
49_L115_A0.6610.72
32_T80_V0.6600.72
17_S49_L0.6600.72
90_Y93_G0.6590.72
165_L173_R0.6580.72
141_A145_L0.6570.72
53_N111_V0.6560.72
92_F95_Y0.6550.72
24_G98_L0.6530.71
152_I155_G0.6520.71
87_I102_I0.6500.71
39_L43_L0.6470.71
151_I163_A0.6450.70
36_T40_G0.6410.70
144_V148_L0.6410.70
40_G86_L0.6380.70
156_T163_A0.6310.69
91_A95_Y0.6290.69
15_N134_I0.6290.69
45_T111_V0.6290.69
124_P128_A0.6240.68
165_L169_A0.6220.68
26_C80_V0.6220.68
73_V121_K0.6210.68
110_I113_G0.6170.67
51_L128_A0.6150.67
74_M112_V0.6120.66
26_C109_C0.6040.65
36_T158_F0.6040.65
125_A128_A0.6040.65
40_G99_G0.6030.65
26_C105_I0.6000.65
171_V175_E0.5980.65
13_W45_T0.5970.65
24_G109_C0.5960.64
146_G158_F0.5940.64
44_A145_L0.5910.64
23_L80_V0.5910.64
34_T154_N0.5900.64
57_S60_R0.5900.64
105_I108_N0.5870.63
33_S84_Q0.5790.62
81_S102_I0.5780.62
87_I95_Y0.5760.62
114_R130_D0.5750.62
35_A157_L0.5700.61
70_P100_I0.5690.61
10_Q21_Q0.5660.60
36_T39_L0.5560.59
151_I162_D0.5560.59
8_I11_G0.5530.59
95_Y100_I0.5520.59
72_Y79_V0.5490.58
138_A142_M0.5480.58
18_A41_L0.5470.58
47_L88_N0.5460.58
25_L31_V0.5450.58
16_N141_A0.5450.58
153_G167_S0.5440.57
13_W140_C0.5430.57
145_L171_V0.5420.57
57_S127_S0.5410.57
140_C144_V0.5400.57
23_L32_T0.5360.56
23_L79_V0.5360.56
157_L161_A0.5350.56
17_S114_R0.5330.56
31_V34_T0.5320.56
161_A169_A0.5320.56
24_G142_M0.5310.56
60_R119_A0.5300.56
18_A27_P0.5270.55
21_Q134_I0.5250.55
57_S124_P0.5210.54
168_W171_V0.5200.54
94_L101_F0.5190.54
34_T47_L0.5170.54
17_S135_G0.5130.53
61_H124_P0.5130.53
22_L45_T0.5120.53
103_P106_V0.5120.53
53_N107_T0.5120.53
49_L111_V0.5110.53
20_V101_F0.5110.53
44_A101_F0.5100.53
30_A80_V0.5090.53
11_G142_M0.5090.53
93_G96_Q0.5090.53
76_I105_I0.5070.52
169_A173_R0.5070.52
27_P103_P0.5050.52
161_A165_L0.5050.52
65_A75_I0.5030.52
18_A96_Q0.5000.51
35_A147_S0.5000.51
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4p6vD 1 0.7749 100 0.162 Contact Map
4p6vE 1 0.7879 100 0.266 Contact Map
3zuxA 1 0.8788 25.5 0.957 Contact Map
2cfqA 1 0.8485 17.1 0.96 Contact Map
2kncA 1 0.2165 15.7 0.961 Contact Map
2m20A 2 0.2165 13.6 0.962 Contact Map
2rddB 1 0.1602 10.6 0.964 Contact Map
4pypA 1 0.7446 9.8 0.964 Contact Map
4m64A 1 0.8701 9.1 0.965 Contact Map
2l8sA 1 0.1861 8.9 0.965 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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