GLXR - ECOLI - GREMLIN Contacts

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GLXR - 2-hydroxy-3-oxopropionate reductase

UniProt:	P77161	Sequences: MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMANHKLA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13265
Length:	292 (277)
Sequences:	11368 (7277)
Seq/√Len:	437.2

ECOLI - GLXR GARR YGBJ SQUU 6PGD
BACSU - YKWC YFJR YQEC 6PGD 6PGDH
HALSA - Q9HMG5
SULSO - Q97XZ7 Q97ZE5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
146_K	150_E	3.701	1.00
70_E	102_R	3.450	1.00
139_E	143_E	3.385	1.00
27_H	46_V	3.125	1.00
113_D	141_V	2.887	1.00
39_L	45_S	2.841	1.00
113_D	144_R	2.760	1.00
17_I	41_L	2.704	1.00
74_F	106_Q	2.593	1.00
233_A	273_Q	2.343	1.00
47_E	51_Q	2.280	1.00
143_E	146_K	2.232	1.00
36_D	40_S	2.217	1.00
107_V	112_G	2.150	1.00
4_G	52_V	2.125	1.00
35_A	45_S	2.104	1.00
88_T	145_V	2.050	1.00
20_A	43_A	2.048	1.00
210_S	215_E	1.993	1.00
13_T	37_E	1.988	1.00
48_T	51_Q	1.980	1.00
196_D	199_R	1.941	1.00
139_E	158_L	1.937	1.00
24_H	151_L	1.932	1.00
80_T	107_V	1.931	1.00
98_I	248_A	1.854	1.00
61_I	89_I	1.846	1.00
113_D	138_D	1.823	1.00
25_Q	44_V	1.807	1.00
245_S	248_A	1.800	1.00
18_N	21_R	1.799	1.00
22_A	151_L	1.787	1.00
84_L	87_K	1.781	1.00
233_A	267_A	1.727	1.00
108_N	138_D	1.708	1.00
190_A	200_V	1.697	1.00
104_A	162_N	1.667	1.00
138_D	141_V	1.659	1.00
105_R	109_E	1.643	1.00
73_L	89_I	1.638	1.00
62_M	92_M	1.635	1.00
83_S	87_K	1.630	1.00
133_I	152_L	1.628	1.00
115_L	137_G	1.612	1.00
28_V	43_A	1.607	1.00
271_G	274_L	1.595	1.00
88_T	141_V	1.582	1.00
33_P	36_D	1.574	1.00
106_Q	109_E	1.565	1.00
142_F	146_K	1.551	1.00
133_I	153_G	1.544	1.00
102_R	106_Q	1.535	1.00
104_A	108_N	1.519	1.00
18_N	129_G	1.506	1.00
117_A	133_I	1.494	1.00
115_L	145_V	1.476	1.00
198_V	202_Q	1.475	1.00
50_R	54_E	1.461	1.00
52_V	56_S	1.461	1.00
36_D	39_L	1.460	1.00
27_H	44_V	1.460	1.00
142_F	158_L	1.454	1.00
60_F	92_M	1.453	1.00
65_D	68_Q	1.437	1.00
219_E	223_K	1.423	1.00
232_I	266_C	1.409	1.00
159_V	168_C	1.408	1.00
74_F	78_G	1.405	1.00
178_L	182_A	1.401	1.00
123_E	127_R	1.401	1.00
170_V	241_L	1.397	1.00
27_H	55_A	1.375	1.00
124_I	128_E	1.356	1.00
66_T	99_E	1.356	1.00
50_R	82_A	1.349	1.00
205_M	215_E	1.343	1.00
33_P	47_E	1.339	1.00
57_D	84_L	1.332	1.00
257_A	261_E	1.330	1.00
21_R	41_L	1.326	1.00
260_Q	264_N	1.324	1.00
233_A	272_S	1.322	1.00
100_T	114_Y	1.305	1.00
55_A	84_L	1.302	1.00
101_K	162_N	1.296	1.00
191_S	197_P	1.292	1.00
274_L	281_Q	1.291	1.00
130_T	154_K	1.286	1.00
62_M	119_V	1.281	1.00
49_A	82_A	1.280	1.00
88_T	144_R	1.279	1.00
115_L	142_F	1.276	1.00
17_I	127_R	1.272	1.00
107_V	114_Y	1.264	1.00
90_V	145_V	1.241	1.00
258_T	261_E	1.234	1.00
21_R	127_R	1.231	1.00
14_P	127_R	1.230	1.00
236_Q	267_A	1.214	1.00
81_K	110_L	1.212	1.00
78_G	81_K	1.207	1.00
246_A	253_L	1.203	1.00
67_P	71_E	1.198	1.00
70_E	74_F	1.198	1.00
247_K	257_A	1.198	1.00
138_D	161_G	1.195	1.00
58_I	88_T	1.190	1.00
16_A	26_L	1.182	1.00
145_V	149_F	1.179	1.00
4_G	56_S	1.178	1.00
58_I	148_L	1.175	1.00
177_A	239_L	1.171	1.00
5_F	15_M	1.169	1.00
70_E	106_Q	1.168	1.00
177_A	235_H	1.168	1.00
92_M	133_I	1.162	1.00
37_E	40_S	1.157	1.00
244_Q	248_A	1.156	1.00
87_K	112_G	1.154	1.00
96_S	99_E	1.149	1.00
193_A	249_L	1.145	1.00
101_K	167_T	1.144	1.00
5_F	60_F	1.131	1.00
83_S	112_G	1.131	1.00
261_E	264_N	1.126	1.00
106_Q	110_L	1.124	1.00
188_L	192_K	1.122	1.00
38_L	43_A	1.118	1.00
5_F	16_A	1.118	1.00
63_V	72_V	1.113	1.00
80_T	110_L	1.109	1.00
53_T	82_A	1.099	1.00
17_I	21_R	1.094	1.00
27_H	56_S	1.093	1.00
252_N	257_A	1.093	1.00
66_T	96_S	1.079	1.00
89_I	107_V	1.073	1.00
10_I	123_E	1.066	1.00
236_Q	264_N	1.066	1.00
161_G	164_D	1.065	1.00
20_A	42_G	1.065	1.00
92_M	152_L	1.060	1.00
60_F	148_L	1.051	1.00
50_R	78_G	1.051	1.00
243_L	257_A	1.040	1.00
104_A	138_D	1.034	1.00
101_K	105_R	1.030	1.00
70_E	99_E	1.025	1.00
240_N	260_Q	1.024	1.00
175_I	186_A	1.022	1.00
135_V	142_F	1.019	1.00
105_R	108_N	1.018	1.00
244_Q	247_K	1.001	1.00
116_D	163_G	1.000	1.00
83_S	89_I	0.998	1.00
126_A	131_L	0.986	1.00
158_L	161_G	0.986	1.00
30_T	34_V	0.977	1.00
37_E	41_L	0.977	1.00
46_V	52_V	0.972	1.00
73_L	79_C	0.968	1.00
230_F	234_L	0.967	1.00
171_A	190_A	0.965	1.00
115_L	135_V	0.963	1.00
264_N	268_A	0.955	1.00
46_V	51_Q	0.955	1.00
187_L	201_R	0.954	1.00
232_I	267_A	0.952	1.00
150_E	156_I	0.946	1.00
199_R	202_Q	0.946	1.00
212_R	216_V	0.946	1.00
31_I	68_Q	0.945	1.00
205_M	214_L	0.941	1.00
120_S	172_N	0.940	1.00
171_A	186_A	0.940	1.00
73_L	107_V	0.931	1.00
33_P	45_S	0.929	1.00
69_V	95_I	0.926	1.00
68_Q	71_E	0.924	1.00
60_F	90_V	0.922	1.00
51_Q	54_E	0.917	1.00
143_E	158_L	0.916	1.00
137_G	142_F	0.916	1.00
240_N	244_Q	0.915	1.00
134_M	203_A	0.911	1.00
85_K	111_G	0.905	1.00
8_L	38_L	0.904	1.00
159_V	164_D	0.902	1.00
74_F	103_F	0.899	1.00
120_S	134_M	0.896	1.00
201_R	218_G	0.891	1.00
99_E	102_R	0.885	1.00
18_N	152_L	0.884	1.00
88_T	113_D	0.884	1.00
178_L	255_N	0.883	1.00
271_G	281_Q	0.879	1.00
13_T	17_I	0.877	1.00
240_N	264_N	0.876	1.00
100_T	166_Q	0.874	1.00
274_L	278_A	0.871	1.00
192_K	251_L	0.870	1.00
5_F	26_L	0.869	1.00
167_T	193_A	0.869	1.00
159_V	203_A	0.867	1.00
236_Q	260_Q	0.860	1.00
8_L	28_V	0.856	1.00
267_A	272_S	0.853	1.00
59_I	79_C	0.852	1.00
102_R	105_R	0.851	1.00
70_E	103_F	0.851	1.00
95_I	99_E	0.850	1.00
167_T	245_S	0.849	1.00
96_S	244_Q	0.847	1.00
19_L	60_F	0.838	1.00
227_N	274_L	0.834	1.00
58_I	144_R	0.828	1.00
168_C	195_A	0.827	1.00
116_D	165_G	0.826	1.00
147_P	150_E	0.826	1.00
15_M	152_L	0.825	1.00
179_N	211_S	0.822	1.00
34_V	37_E	0.820	1.00
198_V	223_K	0.817	1.00
181_E	255_N	0.809	1.00
136_G	165_G	0.803	1.00
141_V	144_R	0.801	1.00
27_H	52_V	0.800	1.00
90_V	117_A	0.798	1.00
94_S	241_L	0.786	1.00
101_K	163_G	0.785	1.00
139_E	161_G	0.784	1.00
231_K	273_Q	0.782	1.00
64_P	68_Q	0.782	1.00
231_K	234_L	0.781	1.00
61_I	69_V	0.779	1.00
192_K	249_L	0.775	1.00
184_S	279_L	0.774	1.00
255_N	259_C	0.773	1.00
265_T	282_A	0.772	1.00
265_T	268_A	0.771	1.00
205_M	210_S	0.770	1.00
218_G	221_M	0.770	1.00
15_M	131_L	0.770	1.00
266_C	278_A	0.766	1.00
115_L	141_V	0.764	1.00
179_N	183_V	0.763	1.00
20_A	41_L	0.756	1.00
3_L	24_H	0.755	1.00
15_M	92_M	0.753	1.00
98_I	101_K	0.751	1.00
91_D	114_Y	0.749	1.00
174_I	256_T	0.748	1.00
141_V	145_V	0.745	1.00
113_D	140_A	0.738	1.00
122_G	125_G	0.738	1.00
226_F	281_Q	0.738	1.00
190_A	195_A	0.738	1.00
174_I	242_A	0.734	1.00
74_F	80_T	0.731	1.00
58_I	90_V	0.730	1.00
28_V	35_A	0.727	1.00
232_I	278_A	0.726	1.00
201_R	205_M	0.724	1.00
61_I	73_L	0.722	1.00
142_F	156_I	0.722	1.00
198_V	222_I	0.716	1.00
13_T	41_L	0.715	1.00
183_V	214_L	0.714	1.00
175_I	183_V	0.714	1.00
243_L	260_Q	0.713	1.00
245_S	249_L	0.713	1.00
31_I	34_V	0.713	1.00
146_K	156_I	0.712	1.00
103_F	114_Y	0.712	1.00
63_V	68_Q	0.710	1.00
15_M	62_M	0.706	1.00
5_F	62_M	0.706	1.00
80_T	112_G	0.705	1.00
218_G	222_I	0.703	1.00
19_L	26_L	0.702	1.00
261_E	265_T	0.696	1.00
3_L	148_L	0.691	1.00
262_L	265_T	0.690	1.00
51_Q	55_A	0.685	1.00
6_I	29_T	0.682	1.00
20_A	26_L	0.680	1.00
117_A	135_V	0.675	1.00
74_F	81_K	0.674	1.00
149_F	156_I	0.673	1.00
157_T	203_A	0.672	1.00
188_L	191_S	0.670	1.00
265_T	269_N	0.668	1.00
247_K	260_Q	0.668	1.00
49_A	53_T	0.667	1.00
59_I	83_S	0.666	1.00
24_H	148_L	0.666	1.00
201_R	204_L	0.664	1.00
3_L	19_L	0.663	1.00
136_G	158_L	0.661	1.00
6_I	49_A	0.661	1.00
266_C	282_A	0.660	1.00
175_I	182_A	0.657	1.00
80_T	106_Q	0.657	1.00
168_C	200_V	0.655	1.00
189_F	253_L	0.650	0.99
175_I	179_N	0.647	0.99
278_A	281_Q	0.647	0.99
30_T	33_P	0.647	0.99
171_A	189_F	0.646	0.99
135_V	149_F	0.643	0.99
179_N	213_I	0.642	0.99
84_L	112_G	0.638	0.99
170_V	242_A	0.637	0.99
36_D	45_S	0.636	0.99
99_E	103_F	0.634	0.99
167_T	195_A	0.631	0.99
63_V	69_V	0.631	0.99
178_L	259_C	0.630	0.99
140_A	143_E	0.630	0.99
69_V	93_S	0.629	0.99
269_N	282_A	0.629	0.99
155_N	206_G	0.629	0.99
67_P	70_E	0.629	0.99
69_V	99_E	0.628	0.99
95_I	166_Q	0.628	0.99
85_K	110_L	0.625	0.99
96_S	241_L	0.623	0.99
114_Y	162_N	0.618	0.99
195_A	200_V	0.618	0.99
79_C	83_S	0.615	0.99
125_G	130_T	0.611	0.99
71_E	78_G	0.610	0.99
264_N	267_A	0.609	0.99
180_I	276_H	0.609	0.99
11_M	15_M	0.608	0.99
135_V	156_I	0.606	0.99
175_I	204_L	0.605	0.99
95_I	100_T	0.605	0.99
6_I	52_V	0.603	0.99
13_T	38_L	0.601	0.99
146_K	158_L	0.601	0.99
149_F	153_G	0.601	0.99
50_R	81_K	0.599	0.99
16_A	28_V	0.599	0.99
236_Q	240_N	0.596	0.99
56_S	59_I	0.595	0.99
69_V	91_D	0.594	0.99
266_C	271_G	0.594	0.99
240_N	247_K	0.592	0.99
9_G	64_P	0.590	0.99
212_R	215_E	0.589	0.99
155_N	202_Q	0.586	0.99
117_A	149_F	0.585	0.99
261_E	268_A	0.582	0.99
14_P	123_E	0.581	0.99
17_I	20_A	0.575	0.99
8_L	16_A	0.572	0.99
204_L	209_A	0.569	0.99
52_V	55_A	0.567	0.99
61_I	91_D	0.566	0.99
139_E	142_F	0.566	0.99
72_V	78_G	0.564	0.99
188_L	251_L	0.562	0.98
225_T	228_P	0.561	0.98
243_L	247_K	0.560	0.98
90_V	149_F	0.560	0.98
220_R	225_T	0.559	0.98
71_E	74_F	0.558	0.98
201_R	222_I	0.558	0.98
58_I	145_V	0.555	0.98
97_P	167_T	0.553	0.98
140_A	144_R	0.553	0.98
252_N	265_T	0.552	0.98
69_V	103_F	0.551	0.98
30_T	68_Q	0.551	0.98
14_P	129_G	0.551	0.98
29_T	49_A	0.550	0.98
35_A	39_L	0.550	0.98
125_G	128_E	0.549	0.98
187_L	218_G	0.549	0.98
176_V	213_I	0.545	0.98
184_S	221_M	0.541	0.98
73_L	103_F	0.538	0.98
174_I	189_F	0.538	0.98
217_H	275_D	0.537	0.98
44_V	55_A	0.531	0.98
98_I	102_R	0.529	0.98
148_L	151_L	0.528	0.98
200_V	204_L	0.527	0.98
18_N	22_A	0.526	0.98
4_G	27_H	0.526	0.98
59_I	87_K	0.526	0.98
91_D	100_T	0.521	0.98
208_F	213_I	0.521	0.98
213_I	217_H	0.520	0.98
50_R	53_T	0.519	0.97
49_A	52_V	0.518	0.97
121_G	131_L	0.518	0.97
157_T	206_G	0.517	0.97
217_H	220_R	0.516	0.97
141_V	162_N	0.513	0.97
32_G	35_A	0.512	0.97
197_P	222_I	0.512	0.97
255_N	258_T	0.512	0.97
139_E	146_K	0.509	0.97
17_I	37_E	0.509	0.97
73_L	80_T	0.508	0.97
147_P	151_L	0.508	0.97
20_A	38_L	0.508	0.97
54_E	82_A	0.504	0.97
159_V	199_R	0.504	0.97
164_D	167_T	0.503	0.97
60_F	149_F	0.503	0.97
16_A	43_A	0.503	0.97
11_M	62_M	0.502	0.97
172_N	207_G	0.500	0.97

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3obbA	4	0.9795	100	0.358	Contact Map
1vpdA	1	1	100	0.359	Contact Map
3ckyA	4	1	100	0.359	Contact Map
3dojA	3	0.9829	100	0.363	Contact Map
3pefA	5	0.976	100	0.364	Contact Map
3pduA	4	0.976	100	0.365	Contact Map
1yb4A	4	0.9932	100	0.369	Contact Map
4gbjA	2	0.9863	100	0.375	Contact Map
3g0oA	3	0.9623	100	0.375	Contact Map
2uyyA	3	0.976	100	0.375	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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