MHPC - ECOLI - GREMLIN Contacts

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MHPC - 2-hydroxy-6-oxononadienedioate/2-hydroxy-6-oxononatrienedioate hydrolase

UniProt:	P77044	Sequences: MSYQPQTEAATSRFLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQLDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQLYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFPDFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAGSELHIFRDCGHWAQWEHADAFNQLVLNFLARP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG20275
Length:	288 (256)
Sequences:	61173 (50358)
Seq/√Len:	3147.4

ECOLI - MHPC RUTD PLDB BIOH YBFF MENH YCJY YFHR
BACSU - YUGF YFHM NAP YISY YCGS RSBQ YBFK YDJP YBDG YRAK YBAC MENH YVAM YCLE PLBAC YQJL EST YQKD CAH
HALSA - Q9HPT9 Q9HHP4 Q9HRJ0
SULSO - PIP Q7LXY9 Q97WG0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
30_D	67_R	4.745	1.00
109_H	133_K	4.237	1.00
74_P	95_I	3.405	1.00
97_K	123_F	2.924	1.00
57_N	278_N	2.890	1.00
273_H	276_A	2.816	1.00
109_H	132_G	2.671	1.00
260_H	280_L	2.663	1.00
237_R	263_R	2.540	1.00
138_G	239_D	2.528	1.00
107_K	132_G	2.483	1.00
232_L	284_F	2.409	1.00
137_M	277_F	2.393	1.00
262_F	280_L	2.347	1.00
29_N	48_A	2.286	1.00
25_R	80_D	2.186	1.00
97_K	127_W	2.173	1.00
97_K	130_R	2.171	1.00
123_F	127_W	2.129	1.00
97_K	101_D	2.118	1.00
110_L	120_S	2.039	1.00
237_R	261_I	1.979	1.00
27_H	78_K	1.938	1.00
28_F	99_V	1.924	1.00
60_P	278_N	1.923	1.00
100_V	108_I	1.907	1.00
101_D	130_R	1.905	1.00
37_T	69_I	1.888	1.00
122_A	126_K	1.854	1.00
31_C	70_L	1.844	1.00
37_T	105_I	1.834	1.00
37_T	67_R	1.832	1.00
117_G	139_G	1.828	1.00
30_D	69_I	1.819	1.00
109_H	285_L	1.807	1.00
251_L	257_S	1.804	1.00
244_M	261_I	1.793	1.00
65_G	282_L	1.780	1.00
124_T	134_L	1.743	1.00
265_C	273_H	1.732	1.00
27_H	48_A	1.713	1.00
42_H	73_C	1.675	1.00
94_R	126_K	1.667	1.00
46_P	50_G	1.627	1.00
280_L	283_N	1.615	1.00
109_H	135_V	1.609	1.00
232_L	260_H	1.601	1.00
66_Y	109_H	1.595	1.00
90_D	126_K	1.589	1.00
93_A	122_A	1.577	1.00
41_L	96_L	1.560	1.00
249_R	253_G	1.557	1.00
231_T	254_I	1.556	1.00
42_H	76_W	1.539	1.00
41_L	73_C	1.536	1.00
73_C	119_S	1.526	1.00
71_L	96_L	1.521	1.00
36_E	109_H	1.475	1.00
123_F	131_V	1.473	1.00
127_W	130_R	1.442	1.00
120_S	134_L	1.413	1.00
48_A	72_D	1.398	1.00
121_V	136_L	1.383	1.00
88_R	91_L	1.377	1.00
27_H	72_D	1.374	1.00
36_E	132_G	1.360	1.00
123_F	130_R	1.355	1.00
96_L	123_F	1.353	1.00
276_A	280_L	1.338	1.00
122_A	125_L	1.332	1.00
22_K	98_S	1.317	1.00
64_A	282_L	1.311	1.00
60_P	282_L	1.292	1.00
235_W	247_G	1.291	1.00
135_V	281_V	1.287	1.00
69_I	99_V	1.285	1.00
111_L	137_M	1.281	1.00
113_N	270_Q	1.272	1.00
279_Q	283_N	1.267	1.00
31_C	58_I	1.259	1.00
244_M	248_L	1.257	1.00
24_L	74_P	1.255	1.00
41_L	120_S	1.250	1.00
45_G	76_W	1.247	1.00
38_V	66_Y	1.242	1.00
114_S	267_H	1.233	1.00
32_G	67_R	1.227	1.00
223_R	226_E	1.205	1.00
101_D	127_W	1.201	1.00
26_I	95_I	1.200	1.00
52_A	56_R	1.200	1.00
48_A	78_K	1.199	1.00
209_S	212_A	1.188	1.00
136_L	139_G	1.185	1.00
40_L	111_L	1.181	1.00
40_L	68_V	1.178	1.00
99_V	103_L	1.176	1.00
58_I	70_L	1.173	1.00
210_L	213_N	1.169	1.00
276_A	279_Q	1.162	1.00
60_P	64_A	1.162	1.00
135_V	232_L	1.140	1.00
248_L	252_S	1.123	1.00
206_F	209_S	1.119	1.00
211_E	214_P	1.115	1.00
251_L	259_L	1.115	1.00
262_F	265_C	1.115	1.00
105_I	108_I	1.112	1.00
234_V	262_F	1.106	1.00
235_W	259_L	1.105	1.00
235_W	261_I	1.103	1.00
254_I	257_S	1.102	1.00
125_L	223_R	1.095	1.00
41_L	110_L	1.094	1.00
232_L	258_E	1.090	1.00
48_A	70_L	1.089	1.00
36_E	66_Y	1.079	1.00
39_V	100_V	1.073	1.00
31_C	62_V	1.060	1.00
43_G	114_S	1.058	1.00
185_T	188_L	1.057	1.00
111_L	281_V	1.047	1.00
112_G	120_S	1.046	1.00
108_I	131_V	1.046	1.00
277_F	281_V	1.028	1.00
28_F	103_L	1.024	1.00
45_G	114_S	1.022	1.00
258_E	280_L	1.015	1.00
71_L	99_V	1.014	1.00
166_T	169_N	1.009	1.00
90_D	122_A	1.007	1.00
262_F	276_A	1.004	1.00
60_P	275_D	0.991	1.00
249_R	252_S	0.987	1.00
50_G	270_Q	0.978	1.00
133_K	230_Q	0.975	1.00
266_G	272_E	0.974	1.00
34_G	67_R	0.966	1.00
248_L	251_L	0.962	1.00
206_F	210_L	0.959	1.00
225_A	253_G	0.958	1.00
113_N	268_W	0.957	1.00
108_I	130_R	0.957	1.00
260_H	283_N	0.955	1.00
97_K	126_K	0.952	1.00
59_D	62_V	0.952	1.00
137_M	270_Q	0.952	1.00
72_D	77_G	0.948	1.00
93_A	119_S	0.948	1.00
56_R	59_D	0.945	1.00
100_V	123_F	0.940	1.00
52_A	70_L	0.939	1.00
235_W	244_M	0.936	1.00
97_K	100_V	0.930	1.00
33_Q	67_R	0.929	1.00
186_D	190_E	0.924	1.00
159_N	163_R	0.921	1.00
39_V	108_I	0.914	1.00
69_I	103_L	0.907	1.00
248_L	259_L	0.906	1.00
137_M	269_A	0.902	1.00
265_C	272_E	0.895	1.00
66_Y	285_L	0.892	1.00
73_C	115_M	0.892	1.00
91_L	94_R	0.888	1.00
98_S	101_D	0.885	1.00
24_L	80_D	0.884	1.00
62_V	68_V	0.884	1.00
209_S	213_N	0.884	1.00
100_V	105_I	0.883	1.00
98_S	102_Q	0.883	1.00
165_P	169_N	0.881	1.00
248_L	261_I	0.881	1.00
191_A	195_N	0.880	1.00
207_V	210_L	0.880	1.00
275_D	279_Q	0.879	1.00
58_I	62_V	0.874	1.00
38_V	111_L	0.873	1.00
156_K	159_N	0.845	1.00
41_L	71_L	0.844	1.00
93_A	126_K	0.842	1.00
36_E	107_K	0.840	1.00
208_K	212_A	0.839	1.00
160_Q	164_Q	0.835	1.00
62_V	65_G	0.831	1.00
190_E	194_N	0.830	1.00
265_C	269_A	0.818	1.00
38_V	68_V	0.817	1.00
208_K	211_E	0.816	1.00
134_L	231_T	0.814	1.00
210_L	214_P	0.812	1.00
40_L	51_W	0.811	1.00
237_R	264_D	0.806	1.00
260_H	276_A	0.798	1.00
233_I	257_S	0.797	1.00
203_L	206_F	0.792	1.00
173_M	177_F	0.792	1.00
236_G	269_A	0.791	1.00
155_I	159_N	0.790	1.00
37_T	66_Y	0.784	1.00
113_N	138_G	0.782	1.00
246_A	249_R	0.781	1.00
122_A	223_R	0.781	1.00
112_G	117_G	0.779	1.00
49_T	52_A	0.777	1.00
58_I	68_V	0.777	1.00
92_N	115_M	0.775	1.00
234_V	280_L	0.775	1.00
204_E	208_K	0.775	1.00
94_R	97_K	0.773	1.00
228_K	255_A	0.771	1.00
124_T	131_V	0.762	1.00
37_T	108_I	0.760	1.00
26_I	79_S	0.755	1.00
57_N	60_P	0.753	1.00
36_E	133_K	0.753	1.00
172_L	175_D	0.747	1.00
94_R	98_S	0.746	1.00
220_F	223_R	0.745	1.00
93_A	123_F	0.742	1.00
86_G	91_L	0.741	1.00
177_F	181_T	0.736	1.00
110_L	123_F	0.732	1.00
73_C	92_N	0.730	1.00
278_N	282_L	0.728	1.00
193_L	197_L	0.726	1.00
264_D	273_H	0.721	1.00
39_V	96_L	0.720	1.00
110_L	131_V	0.719	1.00
199_R	202_H	0.718	1.00
155_I	158_L	0.716	1.00
158_L	162_Y	0.716	1.00
48_A	71_L	0.716	1.00
29_N	52_A	0.713	1.00
44_S	115_M	0.712	1.00
199_R	203_L	0.711	1.00
193_L	196_M	0.710	1.00
133_K	284_F	0.710	1.00
72_D	78_K	0.708	1.00
138_G	269_A	0.707	1.00
38_V	109_H	0.705	1.00
247_G	259_L	0.701	1.00
27_H	79_S	0.701	1.00
177_F	180_D	0.700	1.00
38_V	285_L	0.700	1.00
113_N	137_M	0.696	1.00
45_G	115_M	0.696	1.00
172_L	176_I	0.695	1.00
279_Q	282_L	0.693	1.00
179_F	182_S	0.692	1.00
57_N	277_F	0.692	1.00
66_Y	282_L	0.687	1.00
176_I	179_F	0.687	1.00
152_T	156_K	0.685	1.00
138_G	235_W	0.683	1.00
188_L	191_A	0.683	1.00
138_G	236_G	0.675	1.00
74_P	92_N	0.673	1.00
124_T	229_A	0.671	1.00
90_D	94_R	0.670	1.00
187_A	191_A	0.670	1.00
274_A	278_N	0.669	1.00
125_L	226_E	0.667	1.00
245_D	248_L	0.667	1.00
135_V	285_L	0.667	1.00
262_F	273_H	0.666	1.00
154_G	158_L	0.665	1.00
73_C	76_W	0.665	1.00
26_I	74_P	0.664	1.00
31_C	59_D	0.663	1.00
192_R	195_N	0.662	1.00
108_I	132_G	0.661	1.00
171_K	175_D	0.658	1.00
121_V	141_T	0.658	1.00
237_R	244_M	0.658	1.00
42_H	71_L	0.656	1.00
207_V	211_E	0.656	1.00
69_I	105_I	0.649	1.00
111_L	135_V	0.648	1.00
191_A	194_N	0.648	1.00
133_K	285_L	0.647	1.00
30_D	33_Q	0.646	1.00
118_H	140_G	0.641	1.00
202_H	205_N	0.639	1.00
92_N	119_S	0.638	1.00
108_I	123_F	0.637	1.00
117_G	136_L	0.635	1.00
135_V	284_F	0.634	1.00
39_V	71_L	0.633	1.00
222_P	225_A	0.628	1.00
173_M	176_I	0.628	1.00
171_K	174_M	0.627	1.00
239_D	267_H	0.626	1.00
176_I	180_D	0.626	1.00
67_R	105_I	0.625	1.00
142_G	145_S	0.625	1.00
30_D	103_L	0.621	1.00
160_Q	163_R	0.618	1.00
238_N	264_D	0.617	1.00
178_V	182_S	0.616	1.00
89_S	122_A	0.614	1.00
234_V	277_F	0.614	1.00
112_G	116_G	0.614	1.00
166_T	170_L	0.612	1.00
35_D	67_R	0.609	1.00
201_D	204_E	0.608	1.00
154_G	157_R	0.606	1.00
131_V	229_A	0.604	1.00
106_A	130_R	0.603	1.00
152_T	159_N	0.602	1.00
135_V	234_V	0.601	1.00
114_S	268_W	0.601	1.00
206_F	213_N	0.599	1.00
192_R	197_L	0.598	1.00
40_L	70_L	0.596	1.00
175_D	179_F	0.596	1.00
104_D	107_K	0.596	1.00
192_R	196_M	0.594	1.00
250_L	254_I	0.593	1.00
209_S	214_P	0.591	1.00
154_G	159_N	0.590	1.00
61_L	281_V	0.589	1.00
184_L	189_F	0.588	1.00
219_D	223_R	0.583	1.00
178_V	181_T	0.581	1.00
29_N	70_L	0.578	1.00
175_D	178_V	0.577	1.00
203_L	207_V	0.576	1.00
91_L	95_I	0.575	1.00
136_L	233_I	0.570	1.00
118_H	121_V	0.567	1.00
46_P	268_W	0.567	1.00
93_A	97_K	0.561	1.00
22_K	91_L	0.558	1.00
269_A	277_F	0.555	1.00
126_K	223_R	0.554	1.00
121_V	139_G	0.552	1.00
174_M	177_F	0.551	1.00
133_K	232_L	0.549	1.00
87_S	91_L	0.549	1.00
124_T	227_I	0.548	1.00
202_H	206_F	0.548	1.00
165_P	170_L	0.547	1.00
100_V	130_R	0.546	1.00
157_R	160_Q	0.546	1.00
187_A	190_E	0.542	1.00
44_S	76_W	0.542	1.00
73_C	96_L	0.541	1.00
221_G	249_R	0.540	1.00
203_L	209_S	0.539	1.00
156_K	160_Q	0.539	1.00
39_V	110_L	0.537	1.00
58_I	61_L	0.537	1.00
251_L	254_I	0.535	1.00
22_K	94_R	0.533	1.00
200_R	203_L	0.532	1.00
208_K	213_N	0.528	1.00
247_G	251_L	0.525	1.00
44_S	114_S	0.522	1.00
40_L	61_L	0.522	1.00
201_D	206_F	0.521	1.00
43_G	113_N	0.521	1.00
219_D	222_P	0.521	1.00
233_I	259_L	0.518	1.00
52_A	59_D	0.517	1.00
186_D	189_F	0.517	1.00
205_N	208_K	0.516	1.00
278_N	283_N	0.516	1.00
29_N	49_T	0.516	1.00
50_G	113_N	0.515	1.00
51_W	58_I	0.514	1.00
49_T	78_K	0.514	1.00
233_I	247_G	0.514	1.00
38_V	61_L	0.513	1.00
221_G	253_G	0.513	1.00
144_M	148_T	0.511	1.00
89_S	119_S	0.511	1.00
157_R	161_L	0.510	1.00
203_L	210_L	0.509	1.00
65_G	68_V	0.505	1.00
94_R	127_W	0.505	1.00
270_Q	277_F	0.503	1.00
216_Q	219_D	0.502	1.00
120_S	136_L	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2pujA	4	0.9792	100	0.16	Contact Map
1u2eA	2	0.9792	100	0.161	Contact Map
1ehyA	1	0.9167	100	0.177	Contact Map
2wueA	4	0.9549	100	0.188	Contact Map
4inzA	1	0.9236	100	0.188	Contact Map
3oosA	1	0.9306	100	0.202	Contact Map
4opmA	2	0.9653	100	0.211	Contact Map
3om8A	4	0.9097	100	0.212	Contact Map
1iupA	2	0.9167	100	0.213	Contact Map
4ns4A	1	0.9062	100	0.217	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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