GREMLIN Database
YFGD - Uncharacterized protein YfgD
UniProt: P76569 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG14200
Length: 119 (113)
Sequences: 3220 (2024)
Seq/√Len: 190.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
34_L37_E3.9801.00
42_A85_Q3.1131.00
24_K30_P2.7851.00
47_D51_I2.4061.00
79_S82_A2.3701.00
87_M94_M2.3181.00
41_D44_T2.2641.00
49_L84_I2.2111.00
66_D70_E2.1461.00
85_Q89_D1.8821.00
57_A80_E1.8811.00
7_I99_V1.8251.00
21_N25_E1.7941.00
113_Q116_E1.7621.00
42_A84_I1.7301.00
9_H32_V1.7171.00
67_L90_N1.6961.00
46_R81_E1.6941.00
42_A46_R1.6911.00
51_I105_A1.6771.00
48_L100_V1.6601.00
24_K29_E1.6311.00
33_V44_T1.6031.00
56_S59_E1.4931.00
6_K31_E1.4901.00
101_A104_K1.4791.00
78_L86_A1.4751.00
49_L57_A1.4661.00
15_K18_E1.4411.00
40_A94_M1.4291.00
7_I20_L1.4151.00
56_S80_E1.3911.00
33_V38_T1.3281.00
72_N75_D1.3141.00
20_L32_V1.2991.00
9_H16_S1.2881.00
67_L70_E1.2641.00
67_L92_K1.2571.00
52_L60_L1.2471.00
60_L98_I1.2441.00
11_P34_L1.2421.00
67_L71_L1.2371.00
8_Y48_L1.2301.00
46_R84_I1.2151.00
71_L90_N1.2001.00
39_P94_M1.1761.00
54_M60_L1.1611.00
18_E21_N1.1581.00
63_Q69_K1.1551.00
61_M83_L1.1421.00
42_A88_V1.1381.00
49_L60_L1.1251.00
9_H20_L1.1171.00
19_T114_V1.0971.00
6_K33_V1.0691.00
22_L115_L1.0681.00
101_A117_I1.0531.00
20_L24_K1.0451.00
52_L98_I1.0371.00
42_A81_E1.0341.00
106_R116_E1.0311.00
46_R80_E1.0231.00
64_K95_E1.0161.00
51_I103_G0.9990.99
106_R113_Q0.9980.99
58_R68_Y0.9910.99
45_L84_I0.9810.99
8_Y33_V0.9730.99
44_T47_D0.9590.99
58_R75_D0.9560.99
5_V28_V0.9520.99
8_Y100_V0.9260.99
22_L26_N0.9190.99
54_M59_E0.9180.99
36_L92_K0.9150.99
48_L98_I0.9060.99
18_E111_P0.8790.99
63_Q95_E0.8700.99
66_D69_K0.8660.99
112_E115_L0.8470.98
78_L83_L0.8450.98
21_N24_K0.8360.98
22_L111_P0.8310.98
8_Y44_T0.8290.98
99_V114_V0.8270.98
106_R117_I0.8230.98
15_K111_P0.8220.98
12_R65_E0.8160.98
18_E64_K0.8090.98
108_G113_Q0.8050.98
58_R83_L0.7870.97
82_A85_Q0.7860.97
111_P115_L0.7820.97
7_I19_T0.7790.97
57_A83_L0.7670.97
58_R61_M0.7610.97
23_L26_N0.7540.97
68_Y73_L0.7500.96
98_I107_I0.7420.96
12_R17_R0.7360.96
22_L109_R0.7320.96
49_L53_G0.7260.96
61_M87_M0.7190.95
71_L93_L0.7170.95
26_N115_L0.7070.95
49_L80_E0.6700.93
31_E38_T0.6630.93
61_M68_Y0.6630.93
40_A44_T0.6620.93
17_R20_L0.6600.93
74_A78_L0.6530.93
57_A84_I0.6490.92
95_E108_G0.6460.92
45_L94_M0.6380.92
57_A87_M0.6360.92
20_L30_P0.6350.92
6_K44_T0.6350.92
65_E92_K0.6330.91
80_E83_L0.6300.91
68_Y74_A0.6290.91
25_E28_V0.6210.91
63_Q68_Y0.6210.91
78_L82_A0.6200.91
10_N36_L0.6160.90
43_A46_R0.6150.90
61_M80_E0.6140.90
51_I100_V0.6130.90
46_R50_K0.6130.90
5_V99_V0.6090.90
7_I32_V0.6050.89
56_S83_L0.6050.89
8_Y40_A0.6010.89
14_S18_E0.5990.89
19_T111_P0.5980.89
60_L87_M0.5980.89
68_Y83_L0.5870.88
19_T113_Q0.5840.88
19_T106_R0.5820.88
52_L105_A0.5780.87
51_I101_A0.5750.87
5_V101_A0.5740.87
73_L76_S0.5710.87
48_L105_A0.5550.85
27_G30_P0.5540.85
83_L86_A0.5530.85
59_E95_E0.5510.85
50_K80_E0.5500.85
110_P113_Q0.5500.85
113_Q117_I0.5490.84
5_V23_L0.5480.84
75_D78_L0.5450.84
80_E84_I0.5440.84
14_S111_P0.5400.83
45_L88_V0.5350.83
12_R34_L0.5320.83
19_T99_V0.5310.82
25_E103_G0.5300.82
82_A86_A0.5280.82
19_T108_G0.5250.82
15_K64_K0.5240.82
69_K108_G0.5200.81
18_E25_E0.5170.81
99_V106_R0.5130.80
8_Y98_I0.5120.80
65_E69_K0.5110.80
28_V101_A0.5050.79
63_Q74_A0.5040.79
49_L54_M0.5000.79
71_L82_A0.5000.79
77_S86_A0.5000.79
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2mu0A 1 0.9832 100 0.282 Contact Map
1s3cA 2 0.9664 100 0.286 Contact Map
3f0iA 1 0.9664 100 0.3 Contact Map
3rdwA 1 0.9664 100 0.308 Contact Map
3gkxA 2 0.9664 100 0.312 Contact Map
1z3eA 1 0.9748 100 0.316 Contact Map
3fz4A 1 0.9664 100 0.32 Contact Map
2kokA 1 0.9664 100 0.325 Contact Map
3l78A 1 0.9664 100 0.327 Contact Map
1rw1A 1 0.9496 100 0.335 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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