ACOCT - ECOLI - GREMLIN Contacts

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ACOCT - Acetyl-CoA:oxalate CoA-transferase

UniProt:	P76518	Sequences: MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDHDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13284
Length:	381 (369)
Sequences:	10374 (7063)
Seq/√Len:	367.7

ECOLI - ACOCT FCTA CAIB
SULSO - Q97U79 Q97YI0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
37_R	72_E	3.652	1.00
112_S	115_T	3.582	1.00
301_Q	305_V	3.225	1.00
189_Y	192_E	3.135	1.00
28_T	98_A	3.134	1.00
126_A	184_I	2.966	1.00
92_K	119_I	2.896	1.00
126_A	180_L	2.864	1.00
340_E	343_G	2.766	1.00
80_N	83_D	2.764	1.00
88_I	119_I	2.741	1.00
244_T	303_A	2.546	1.00
107_E	112_S	2.530	1.00
301_Q	306_W	2.529	1.00
116_L	123_L	2.515	1.00
84_K	88_I	2.507	1.00
302_A	305_V	2.476	1.00
190_G	198_A	2.436	1.00
14_L	37_R	2.427	1.00
245_Q	302_A	2.426	1.00
113_W	117_Q	2.417	1.00
76_L	87_F	2.404	1.00
301_Q	309_R	2.328	1.00
89_N	92_K	2.270	1.00
369_D	372_G	2.266	1.00
297_T	300_T	2.214	1.00
85_S	89_N	2.194	1.00
243_N	299_K	2.166	1.00
96_V	184_I	2.120	1.00
340_E	345_M	2.097	1.00
371_H	374_Q	2.055	1.00
18_M	87_F	2.031	1.00
14_L	93_Q	1.971	1.00
292_Q	296_R	1.971	1.00
286_N	289_I	1.957	1.00
372_G	376_R	1.954	1.00
115_T	118_E	1.920	1.00
293_Y	296_R	1.863	1.00
268_L	297_T	1.861	1.00
72_E	374_Q	1.859	1.00
172_A	208_T	1.837	1.00
16_I	91_L	1.800	1.00
140_A	311_H	1.771	1.00
133_H	201_D	1.768	1.00
322_S	325_E	1.766	1.00
182_S	185_V	1.764	1.00
190_G	194_S	1.763	1.00
117_Q	196_R	1.753	1.00
77_D	80_N	1.751	1.00
106_M	111_F	1.747	1.00
34_M	186_S	1.742	1.00
240_D	291_K	1.732	1.00
8_G	11_E	1.722	1.00
304_E	308_A	1.705	1.00
137_L	140_A	1.682	1.00
72_E	378_E	1.679	1.00
276_R	289_I	1.670	1.00
190_G	355_G	1.666	1.00
268_L	271_L	1.664	1.00
16_I	94_A	1.660	1.00
137_L	329_L	1.658	1.00
91_L	116_L	1.656	1.00
367_T	370_Q	1.655	1.00
97_L	123_L	1.652	1.00
159_Y	162_A	1.650	1.00
127_S	199_H	1.614	1.00
32_C	70_G	1.612	1.00
279_S	282_L	1.601	1.00
13_L	188_L	1.592	1.00
81_D	84_K	1.584	1.00
265_A	309_R	1.565	1.00
74_V	375_I	1.559	1.00
76_L	83_D	1.549	1.00
17_D	28_T	1.547	1.00
190_G	196_R	1.539	1.00
113_W	125_Y	1.539	1.00
308_A	312_E	1.537	1.00
264_Q	269_T	1.534	1.00
268_L	293_Y	1.503	1.00
282_L	285_Q	1.482	1.00
149_A	250_T	1.473	1.00
294_I	298_L	1.471	1.00
205_F	332_T	1.463	1.00
303_A	325_E	1.459	1.00
91_L	120_N	1.452	1.00
198_A	354_S	1.450	1.00
206_D	335_R	1.447	1.00
151_S	208_T	1.440	1.00
364_G	370_Q	1.438	1.00
328_K	333_Q	1.435	1.00
74_V	372_G	1.434	1.00
243_N	295_E	1.430	1.00
297_T	306_W	1.416	1.00
244_T	249_I	1.415	1.00
183_G	351_I	1.410	1.00
305_V	309_R	1.409	1.00
264_Q	272_V	1.408	1.00
175_C	211_F	1.407	1.00
373_E	377_Q	1.400	1.00
88_I	115_T	1.383	1.00
33_N	69_H	1.377	1.00
289_I	292_Q	1.368	1.00
122_R	191_R	1.366	1.00
261_A	264_Q	1.364	1.00
196_R	355_G	1.358	1.00
243_N	248_P	1.356	1.00
260_S	273_N	1.353	1.00
271_L	293_Y	1.345	1.00
366_A	371_H	1.345	1.00
76_L	86_I	1.340	1.00
303_A	319_P	1.329	1.00
13_L	189_Y	1.323	1.00
158_G	228_R	1.317	1.00
137_L	150_M	1.305	1.00
298_L	306_W	1.299	1.00
113_W	199_H	1.299	1.00
99_E	127_S	1.298	1.00
278_S	282_L	1.293	1.00
262_L	266_L	1.292	1.00
338_L	345_M	1.292	1.00
265_A	313_V	1.284	1.00
260_S	264_Q	1.278	1.00
242_F	291_K	1.269	1.00
128_S	180_L	1.266	1.00
324_A	328_K	1.260	1.00
124_I	191_R	1.255	1.00
15_V	96_V	1.251	1.00
331_Q	334_A	1.250	1.00
105_T	108_K	1.249	1.00
88_I	111_F	1.242	1.00
256_D	260_S	1.240	1.00
259_F	263_C	1.238	1.00
189_Y	193_K	1.234	1.00
266_L	297_T	1.211	1.00
203_A	206_D	1.181	1.00
198_A	356_C	1.178	1.00
209_L	332_T	1.178	1.00
307_L	317_V	1.175	1.00
82_H	85_S	1.172	1.00
179_Y	210_S	1.166	1.00
86_I	89_N	1.164	1.00
183_G	200_V	1.152	1.00
257_K	261_A	1.152	1.00
70_G	362_M	1.145	1.00
243_N	298_L	1.139	1.00
18_M	97_L	1.137	1.00
253_C	262_L	1.129	1.00
185_V	189_Y	1.127	1.00
305_V	308_A	1.126	1.00
116_L	125_Y	1.116	1.00
225_S	324_A	1.113	1.00
188_L	192_E	1.109	1.00
44_P	75_V	1.108	1.00
73_S	366_A	1.106	1.00
106_M	125_Y	1.103	1.00
27_G	181_F	1.102	1.00
78_L	109_L	1.098	1.00
209_L	326_A	1.092	1.00
91_L	119_I	1.086	1.00
9_P	353_I	1.076	1.00
144_D	148_Q	1.072	1.00
86_I	376_R	1.067	1.00
136_P	334_A	1.066	1.00
70_G	363_P	1.066	1.00
249_I	298_L	1.062	1.00
95_D	191_R	1.061	1.00
79_K	109_L	1.057	1.00
75_V	372_G	1.056	1.00
83_D	86_I	1.049	1.00
249_I	306_W	1.042	1.00
321_L	329_L	1.042	1.00
150_M	329_L	1.038	1.00
247_K	303_A	1.038	1.00
307_L	319_P	1.031	1.00
14_L	39_I	1.031	1.00
10_F	185_V	1.029	1.00
136_P	331_Q	1.028	1.00
142_A	204_M	1.026	1.00
277_F	286_N	1.022	1.00
262_L	294_I	1.017	1.00
187_A	198_A	1.016	1.00
330_P	334_A	1.009	1.00
264_Q	313_V	1.007	1.00
12_G	189_Y	1.006	1.00
296_R	300_T	1.005	1.00
27_G	180_L	1.002	1.00
148_Q	172_A	1.001	1.00
83_D	376_R	1.001	1.00
198_A	355_G	0.999	1.00
304_E	307_L	0.999	1.00
16_I	87_F	0.996	1.00
309_R	312_E	0.996	1.00
341_A	346_M	0.994	1.00
96_V	124_I	0.993	1.00
113_W	197_G	0.987	1.00
84_K	111_F	0.986	1.00
88_I	92_K	0.986	1.00
142_A	147_I	0.984	1.00
18_M	106_M	0.983	1.00
310_I	317_V	0.975	1.00
212_L	323_V	0.974	1.00
74_V	86_I	0.972	1.00
30_L	182_S	0.970	1.00
134_T	138_K	0.967	1.00
289_I	293_Y	0.967	1.00
14_L	94_A	0.964	1.00
225_S	322_S	0.964	1.00
131_F	150_M	0.963	1.00
194_S	355_G	0.962	1.00
304_E	319_P	0.960	1.00
99_E	106_M	0.957	1.00
333_Q	345_M	0.956	1.00
87_F	111_F	0.956	1.00
276_R	286_N	0.952	1.00
92_K	120_N	0.950	1.00
243_N	247_K	0.947	1.00
164_P	248_P	0.946	1.00
363_P	371_H	0.945	1.00
81_D	85_S	0.944	1.00
239_F	252_C	0.943	1.00
181_F	185_V	0.932	1.00
41_V	74_V	0.925	1.00
19_T	24_G	0.925	1.00
219_Y	324_A	0.923	1.00
87_F	91_L	0.922	1.00
191_R	194_S	0.921	1.00
161_D	228_R	0.919	1.00
295_E	299_K	0.916	1.00
232_R	287_Q	0.913	1.00
87_F	97_L	0.913	1.00
277_F	289_I	0.911	1.00
122_R	192_E	0.906	1.00
190_G	356_C	0.902	1.00
321_L	325_E	0.902	1.00
179_Y	207_A	0.902	1.00
188_L	191_R	0.900	1.00
260_S	272_V	0.900	1.00
308_A	311_H	0.897	1.00
125_Y	199_H	0.896	1.00
41_V	87_F	0.892	1.00
309_R	313_V	0.891	1.00
374_Q	378_E	0.890	1.00
339_I	348_G	0.889	1.00
8_G	362_M	0.888	1.00
85_S	88_I	0.887	1.00
93_Q	378_E	0.885	1.00
96_V	188_L	0.876	1.00
280_N	284_V	0.873	1.00
101_F	105_T	0.872	1.00
133_H	199_H	0.871	1.00
21_V	143_Y	0.869	1.00
29_Q	33_N	0.868	1.00
261_A	265_A	0.868	1.00
303_A	307_L	0.864	1.00
157_T	168_G	0.863	1.00
130_G	142_A	0.862	1.00
134_T	334_A	0.860	1.00
32_C	38_V	0.860	1.00
293_Y	297_T	0.858	1.00
145_T	252_C	0.858	1.00
42_E	51_R	0.857	1.00
349_N	358_D	0.857	1.00
206_D	337_M	0.855	1.00
29_Q	69_H	0.855	1.00
149_A	318_A	0.854	1.00
182_S	189_Y	0.852	1.00
37_R	374_Q	0.849	1.00
259_F	283_R	0.843	1.00
97_L	116_L	0.837	1.00
249_I	307_L	0.835	1.00
26_F	30_L	0.831	1.00
31_L	184_I	0.829	1.00
261_A	313_V	0.828	1.00
241_V	250_T	0.827	1.00
88_I	120_N	0.827	1.00
34_M	182_S	0.826	1.00
249_I	303_A	0.823	1.00
97_L	106_M	0.823	1.00
219_Y	225_S	0.820	1.00
295_E	298_L	0.820	1.00
107_E	114_E	0.820	1.00
68_N	71_K	0.818	1.00
84_K	110_G	0.818	1.00
74_V	376_R	0.814	1.00
64_Y	68_N	0.813	1.00
307_L	311_H	0.812	1.00
19_T	28_T	0.808	1.00
23_N	128_S	0.805	1.00
129_S	132_G	0.804	1.00
39_I	375_I	0.801	1.00
115_T	119_I	0.799	1.00
27_G	98_A	0.797	1.00
366_A	370_Q	0.794	1.00
329_L	332_T	0.792	1.00
145_T	250_T	0.790	1.00
358_D	361_V	0.788	1.00
41_V	76_L	0.787	1.00
159_Y	163_P	0.785	1.00
124_I	187_A	0.783	1.00
250_T	318_A	0.783	1.00
245_Q	305_V	0.783	1.00
332_T	337_M	0.779	1.00
37_R	378_E	0.778	1.00
88_I	91_L	0.777	1.00
348_G	352_K	0.773	1.00
114_E	117_Q	0.773	1.00
159_Y	165_V	0.773	1.00
150_M	321_L	0.772	1.00
155_M	322_S	0.768	1.00
112_S	125_Y	0.767	1.00
302_A	306_W	0.767	1.00
45_G	75_V	0.763	1.00
147_I	172_A	0.759	1.00
267_E	309_R	0.759	1.00
331_Q	335_R	0.759	1.00
249_I	317_V	0.756	1.00
337_M	352_K	0.756	1.00
311_H	317_V	0.749	1.00
290_L	294_I	0.749	1.00
75_V	368_L	0.748	1.00
182_S	186_S	0.747	1.00
14_L	72_E	0.746	1.00
84_K	109_L	0.745	1.00
105_T	109_L	0.744	1.00
97_L	125_Y	0.744	1.00
156_E	212_L	0.743	1.00
89_N	93_Q	0.739	1.00
126_A	200_V	0.738	1.00
102_R	105_T	0.737	1.00
277_F	293_Y	0.735	1.00
22_L	67_I	0.735	1.00
135_G	331_Q	0.732	1.00
277_F	290_L	0.727	1.00
40_K	48_D	0.727	1.00
336_N	352_K	0.727	1.00
198_A	353_I	0.726	1.00
275_P	278_S	0.726	1.00
201_D	335_R	0.723	1.00
9_P	356_C	0.722	1.00
99_E	133_H	0.721	1.00
266_L	294_I	0.719	1.00
216_L	327_I	0.719	1.00
104_G	107_E	0.714	0.99
291_K	295_E	0.713	0.99
124_I	189_Y	0.712	0.99
73_S	369_D	0.712	0.99
292_Q	295_E	0.708	0.99
296_R	299_K	0.707	0.99
39_I	94_A	0.707	0.99
237_A	284_V	0.707	0.99
332_T	338_L	0.706	0.99
104_G	139_D	0.706	0.99
107_E	127_S	0.705	0.99
354_S	357_A	0.705	0.99
219_Y	223_G	0.703	0.99
319_P	325_E	0.702	0.99
245_Q	300_T	0.702	0.99
281_I	285_Q	0.701	0.99
178_V	182_S	0.699	0.99
119_I	122_R	0.697	0.99
146_I	318_A	0.696	0.99
75_V	369_D	0.692	0.99
288_A	292_Q	0.692	0.99
149_A	154_M	0.691	0.99
47_G	368_L	0.690	0.99
209_L	337_M	0.689	0.99
190_G	193_K	0.688	0.99
75_V	86_I	0.686	0.99
255_N	258_L	0.686	0.99
202_I	207_A	0.686	0.99
269_T	272_V	0.686	0.99
216_L	220_I	0.684	0.99
240_D	295_E	0.684	0.99
241_V	320_L	0.682	0.99
327_I	338_L	0.681	0.99
134_T	352_K	0.680	0.99
175_C	178_V	0.678	0.99
113_W	123_L	0.678	0.99
10_F	13_L	0.677	0.99
159_Y	240_D	0.677	0.99
83_D	87_F	0.677	0.99
16_I	97_L	0.673	0.99
76_L	376_R	0.671	0.99
25_P	173_D	0.669	0.99
85_S	119_I	0.666	0.99
91_L	111_F	0.665	0.99
102_R	141_P	0.665	0.99
251_I	298_L	0.661	0.99
153_I	167_V	0.660	0.99
258_L	316_P	0.659	0.99
30_L	181_F	0.659	0.99
16_I	93_Q	0.657	0.99
65_S	365_A	0.657	0.99
114_E	118_E	0.656	0.99
300_T	306_W	0.656	0.99
153_I	212_L	0.656	0.99
122_R	194_S	0.655	0.99
232_R	240_D	0.654	0.99
137_L	331_Q	0.654	0.99
263_C	269_T	0.653	0.99
26_F	210_S	0.650	0.99
284_V	287_Q	0.650	0.99
232_R	291_K	0.649	0.99
20_H	49_D	0.648	0.99
237_A	291_K	0.647	0.99
122_R	196_R	0.646	0.99
72_E	363_P	0.644	0.99
175_C	207_A	0.641	0.99
326_A	332_T	0.641	0.99
172_A	176_G	0.639	0.99
244_T	306_W	0.638	0.99
150_M	318_A	0.636	0.99
134_T	335_R	0.635	0.99
163_P	228_R	0.635	0.99
129_S	201_D	0.634	0.99
150_M	319_P	0.634	0.99
107_E	199_H	0.633	0.99
17_D	24_G	0.633	0.99
73_S	368_L	0.631	0.99
9_P	34_M	0.631	0.99
16_I	90_M	0.629	0.99
70_G	361_V	0.629	0.99
26_F	174_L	0.629	0.99
282_L	286_N	0.627	0.99
17_D	71_K	0.624	0.99
132_G	201_D	0.623	0.99
156_E	323_V	0.623	0.99
13_L	96_V	0.620	0.99
265_A	315_V	0.619	0.99
180_L	202_I	0.618	0.99
22_L	170_S	0.618	0.99
145_T	239_F	0.617	0.99
120_N	123_L	0.617	0.99
83_D	372_G	0.616	0.99
372_G	375_I	0.614	0.98
33_N	70_G	0.613	0.98
187_A	200_V	0.612	0.98
114_E	199_H	0.611	0.98
40_K	47_G	0.611	0.98
17_D	20_H	0.611	0.98
24_G	98_A	0.609	0.98
251_I	262_L	0.608	0.98
153_I	208_T	0.608	0.98
31_L	181_F	0.607	0.98
336_N	339_I	0.607	0.98
220_I	345_M	0.606	0.98
176_G	207_A	0.606	0.98
78_L	87_F	0.601	0.98
274_D	277_F	0.601	0.98
88_I	110_G	0.601	0.98
8_G	356_C	0.598	0.98
60_Q	65_S	0.596	0.98
251_I	317_V	0.596	0.98
261_A	314_G	0.595	0.98
99_E	104_G	0.595	0.98
12_G	193_K	0.594	0.98
246_D	303_A	0.594	0.98
34_M	353_I	0.593	0.98
96_V	191_R	0.591	0.98
245_Q	299_K	0.588	0.98
91_L	94_A	0.586	0.98
99_E	125_Y	0.584	0.98
186_S	353_I	0.584	0.98
73_S	370_Q	0.581	0.98
244_T	298_L	0.580	0.98
205_F	331_Q	0.579	0.98
28_T	71_K	0.577	0.98
374_Q	377_Q	0.577	0.98
353_I	356_C	0.576	0.98
91_L	97_L	0.576	0.98
28_T	38_V	0.576	0.98
43_P	75_V	0.575	0.98
141_P	314_G	0.572	0.98
60_Q	367_T	0.572	0.98
339_I	346_M	0.568	0.98
107_E	133_H	0.567	0.97
341_A	361_V	0.567	0.97
353_I	357_A	0.566	0.97
177_G	181_F	0.565	0.97
180_L	184_I	0.565	0.97
218_A	235_Y	0.564	0.97
96_V	185_V	0.563	0.97
103_P	129_S	0.563	0.97
26_F	177_G	0.560	0.97
21_V	49_D	0.559	0.97
176_G	204_M	0.559	0.97
113_W	127_S	0.558	0.97
283_R	286_N	0.557	0.97
18_M	78_L	0.557	0.97
104_G	108_K	0.556	0.97
337_M	348_G	0.555	0.97
265_A	312_E	0.553	0.97
56_Y	59_G	0.550	0.97
264_Q	273_N	0.548	0.97
237_A	290_L	0.547	0.97
47_G	51_R	0.546	0.97
353_I	358_D	0.546	0.97
163_P	243_N	0.545	0.97
39_I	93_Q	0.545	0.97
237_A	287_Q	0.545	0.97
12_G	37_R	0.545	0.97
143_Y	316_P	0.544	0.97
266_L	269_T	0.544	0.97
246_D	302_A	0.540	0.97
181_F	186_S	0.539	0.97
363_P	370_Q	0.539	0.97
112_S	118_E	0.538	0.97
67_I	174_L	0.537	0.97
27_G	177_G	0.537	0.97
13_L	191_R	0.535	0.96
132_G	135_G	0.535	0.96
174_L	213_E	0.534	0.96
167_V	171_L	0.533	0.96
11_E	193_K	0.533	0.96
151_S	205_F	0.532	0.96
146_I	316_P	0.532	0.96
43_P	49_D	0.532	0.96
186_S	189_Y	0.532	0.96
139_D	311_H	0.531	0.96
39_I	90_M	0.528	0.96
23_N	176_G	0.528	0.96
117_Q	125_Y	0.528	0.96
330_P	333_Q	0.528	0.96
107_E	115_T	0.527	0.96
342_G	364_G	0.525	0.96
246_D	304_E	0.525	0.96
82_H	86_I	0.525	0.96
372_G	377_Q	0.524	0.96
172_A	204_M	0.524	0.96
200_V	353_I	0.524	0.96
363_P	374_Q	0.524	0.96
24_G	128_S	0.521	0.96
294_I	297_T	0.520	0.96
128_S	176_G	0.519	0.96
157_T	165_V	0.519	0.96
104_G	112_S	0.518	0.96
143_Y	255_N	0.517	0.96
339_I	361_V	0.517	0.96
270_E	293_Y	0.517	0.96
135_G	138_K	0.515	0.96
42_E	47_G	0.515	0.96
73_S	371_H	0.515	0.96
325_E	328_K	0.514	0.96
127_S	133_H	0.513	0.95
48_D	51_R	0.512	0.95
262_L	310_I	0.512	0.95
306_W	309_R	0.510	0.95
124_I	188_L	0.507	0.95
216_L	347_P	0.505	0.95
268_L	296_R	0.504	0.95
42_E	73_S	0.502	0.95
176_G	202_I	0.502	0.95
75_V	376_R	0.501	0.95
27_G	128_S	0.500	0.95

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4hl6A	2	0.9843	100	0.01	Contact Map
1q7eA	2	0.9633	100	0.02	Contact Map
4ed9A	2	0.979	100	0.021	Contact Map
3ubmA	2	0.979	100	0.028	Contact Map
2vjqA	2	0.979	100	0.029	Contact Map
1xk7A	2	0.9764	100	0.036	Contact Map
2yimA	2	0.9213	100	0.081	Contact Map
2g04A	2	0.9134	100	0.108	Contact Map
1vl6A	4	0.5407	87.3	0.956	Contact Map
3l07A	2	0.3543	82	0.958	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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