GREMLIN Database
YFCP - Uncharacterized fimbrial-like protein YfcP
UniProt: P76499 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG14119
Length: 179 (163)
Sequences: 3378 (2666)
Seq/√Len: 208.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
120_I153_A3.0771.00
116_Q164_T3.0701.00
106_F119_G3.0331.00
121_G154_W2.9261.00
123_E154_W2.8321.00
91_V176_F2.7821.00
44_A82_D2.7701.00
121_G156_Q2.7651.00
77_V148_D2.7611.00
107_L132_I2.6311.00
155_L168_F2.4741.00
109_L168_F2.3971.00
79_K148_D2.2261.00
117_G163_V2.1591.00
120_I170_A2.0971.00
124_K128_M2.0601.00
127_G152_R2.0521.00
114_T167_E2.0101.00
47_V50_Q1.9891.00
77_V150_N1.9861.00
107_L172_L1.9731.00
131_A134_N1.9171.00
121_G129_Q1.8521.00
73_R154_W1.8251.00
100_D158_K1.8221.00
70_Q121_G1.6921.00
75_P152_R1.6901.00
47_V81_K1.6791.00
106_F156_Q1.5951.00
97_G107_L1.5941.00
96_T175_T1.5911.00
26_F29_D1.5691.00
60_V71_S1.4961.00
92_K177_E1.4931.00
70_Q154_W1.4701.00
58_P168_F1.4691.00
105_G131_A1.4471.00
96_T133_N1.4431.00
65_L157_A1.4361.00
142_L145_G1.4351.00
50_Q53_A1.4201.00
37_N59_T1.4141.00
76_V122_M1.3981.00
99_E105_G1.3721.00
57_F155_L1.3471.00
75_P150_N1.3191.00
19_L23_S1.3131.00
70_Q123_E1.2611.00
58_P74_V1.2551.00
22_S26_F1.2451.00
58_P72_A1.2421.00
142_L147_N1.2251.00
70_Q156_Q1.1921.00
18_I22_S1.1891.00
13_L16_G1.1841.00
157_A163_V1.1791.00
67_V157_A1.1671.00
17_L20_A1.1661.00
106_F121_G1.1641.00
50_Q79_K1.1571.00
73_R152_R1.1521.00
91_V147_N1.1511.00
53_A78_F1.1421.00
93_V149_I1.1151.00
57_F168_F1.1131.00
65_L163_V1.0931.00
47_V79_K1.0861.00
66_N157_A1.0801.00
122_M172_L1.0691.00
44_A81_K1.0661.00
30_N174_A1.0581.00
16_G19_L1.0531.00
95_L151_F1.0401.00
65_L118_V1.0331.00
125_T150_N1.0321.00
14_L17_L1.0311.00
30_N34_F1.0231.00
94_T135_T1.0161.00
18_I21_M1.0161.00
123_E152_R1.0001.00
33_H171_S0.9991.00
55_V76_V0.9981.00
40_S62_R0.9941.00
119_G158_K0.9911.00
117_G161_R0.9901.00
65_L161_R0.9891.00
94_T177_E0.9861.00
115_A118_V0.9771.00
95_L122_M0.9731.00
20_A24_T0.9591.00
78_F174_A0.9530.99
157_A162_D0.9500.99
101_S119_G0.9360.99
118_V155_L0.9360.99
141_A144_N0.9270.99
60_V65_L0.9160.99
12_V15_A0.9150.99
64_D71_S0.9090.99
15_A18_I0.9080.99
101_S104_P0.9070.99
17_L21_M0.9070.99
100_D108_A0.9030.99
65_L158_K0.9020.99
57_F120_I0.8970.99
60_V155_L0.8870.99
100_D119_G0.8830.99
97_G100_D0.8770.99
16_G20_A0.8740.99
13_L17_L0.8710.99
107_L170_A0.8690.99
60_V168_F0.8650.99
136_N151_F0.8580.99
20_A23_S0.8490.99
99_E132_I0.8430.99
40_S84_K0.8420.99
11_Y14_L0.8370.99
19_L22_S0.8350.99
80_L147_N0.8340.99
122_M132_I0.8190.98
120_I168_F0.8130.98
11_Y18_I0.8120.98
136_N139_T0.7950.98
35_S54_E0.7940.98
130_V136_N0.7930.98
24_T28_A0.7900.98
47_V53_A0.7880.98
53_A174_A0.7880.98
61_S64_D0.7870.98
15_A19_L0.7860.98
113_S167_E0.7850.98
42_S155_L0.7800.98
20_A25_L0.7770.98
38_L163_V0.7700.98
109_L113_S0.7660.98
110_D169_T0.7650.98
22_S25_L0.7630.98
35_S56_R0.7620.98
21_M24_T0.7530.97
17_L22_S0.7520.97
19_L24_T0.7510.97
134_N137_G0.7490.97
12_V23_S0.7490.97
15_A20_A0.7480.97
21_M25_L0.7410.97
68_A157_A0.7400.97
84_K123_E0.7340.97
57_F74_V0.7310.97
92_K135_T0.7300.97
141_A146_N0.7290.97
130_V151_F0.7240.97
110_D171_S0.7210.97
71_S155_L0.7180.97
20_A26_F0.7180.97
32_L172_L0.7130.96
57_F153_A0.7000.96
118_V163_V0.6910.96
95_L174_A0.6810.95
21_M26_F0.6770.95
94_T134_N0.6720.95
31_N52_L0.6610.94
70_Q73_R0.6600.94
68_A117_G0.6590.94
123_E129_Q0.6570.94
98_V108_A0.6560.94
56_R74_V0.6550.94
92_K136_N0.6530.94
62_R163_V0.6520.94
104_P107_L0.6520.94
62_R165_I0.6470.94
12_V19_L0.6440.94
38_L60_V0.6400.93
14_L20_A0.6390.93
56_R155_L0.6390.93
14_L18_I0.6350.93
53_A97_G0.6350.93
91_V142_L0.6340.93
68_A160_G0.6330.93
58_P169_T0.6310.93
23_S27_A0.6300.93
28_A31_N0.6280.93
90_N141_A0.6280.93
86_P89_Y0.6280.93
12_V16_G0.6250.93
132_I170_A0.6210.92
48_D53_A0.6170.92
49_G79_K0.6150.92
57_F76_V0.6110.92
151_F174_A0.6110.92
132_I151_F0.6090.92
55_V153_A0.6090.92
12_V18_I0.6080.92
48_D51_Y0.6040.91
25_L29_D0.5980.91
57_F154_W0.5930.91
17_L23_S0.5910.91
103_Q106_F0.5890.90
57_F71_S0.5880.90
73_R123_E0.5860.90
90_N144_N0.5850.90
12_V17_L0.5830.90
100_D104_P0.5790.90
47_V78_F0.5790.90
96_T173_T0.5770.89
131_A136_N0.5760.89
157_A161_R0.5720.89
33_H54_E0.5700.89
23_S26_F0.5690.89
40_S89_Y0.5650.88
44_A50_Q0.5650.88
79_K146_N0.5620.88
81_K146_N0.5610.88
65_L68_A0.5590.88
93_V176_F0.5590.88
33_H52_L0.5520.87
84_K142_L0.5500.87
57_F121_G0.5500.87
107_L120_I0.5490.87
18_I23_S0.5380.86
64_D72_A0.5360.86
155_L169_T0.5360.86
30_N36_G0.5340.86
123_E156_Q0.5310.85
76_V153_A0.5300.85
85_G89_Y0.5300.85
68_A163_V0.5280.85
54_E173_T0.5280.85
128_M137_G0.5250.85
106_F109_L0.5230.84
158_K163_V0.5210.84
158_K162_D0.5210.84
16_G23_S0.5210.84
14_L26_F0.5160.84
39_L84_K0.5160.84
28_A34_F0.5140.83
15_A25_L0.5130.83
65_L168_F0.5100.83
109_L169_T0.5100.83
62_R118_V0.5100.83
90_N138_A0.5050.82
103_Q133_N0.5040.82
23_S29_D0.5040.82
13_L19_L0.5010.82
12_V20_A0.5000.82
117_G158_K0.5000.82
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2jmrA 1 0.838 100 0.264 Contact Map
2xg5B 1 0.7821 100 0.277 Contact Map
2jtyA 1 0.8603 100 0.287 Contact Map
2uy6B 2 0.8101 100 0.295 Contact Map
1pdkB 1 0.7765 100 0.315 Contact Map
3bwuF 1 0.6872 99.9 0.369 Contact Map
2w07B 1 0.6592 99.9 0.377 Contact Map
4dwhB 1 0.743 99.9 0.391 Contact Map
5afoA 1 0.9609 99.9 0.397 Contact Map
3bfqG 1 0.7318 99.9 0.403 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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