GREMLIN Database
MDTB - Multidrug resistance protein MdtB
UniProt: P76398 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG14057
Length: 1040 (1001)
Sequences: 15845 (10071)
Seq/√Len: 318.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
952_S955_E4.1411.00
248_E251_R4.0541.00
312_M315_Q3.9591.00
251_R266_G3.8711.00
314_P317_T3.8611.00
721_N799_E3.7521.00
73_T98_S3.6801.00
58_T98_S3.4441.00
528_G1013_F3.4411.00
589_Q621_A3.3401.00
908_A1002_G3.2781.00
428_K431_A3.2241.00
307_D337_R3.1791.00
252_Q266_G3.1581.00
159_P162_Q3.0921.00
427_E435_K3.0751.00
14_R18_M3.0611.00
530_A958_Y3.0511.00
584_N587_Q3.0351.00
686_A689_T2.8821.00
683_S686_A2.8381.00
198_L213_V2.7971.00
153_V167_V2.7651.00
86_L102_L2.7471.00
751_S762_V2.7241.00
723_D797_K2.7181.00
174_K312_M2.7071.00
178_I308_S2.6891.00
73_T93_S2.6411.00
285_N604_S2.6351.00
283_W593_A2.6341.00
733_S736_D2.6241.00
722_V727_A2.6141.00
310_R331_D2.5761.00
727_A737_V2.5421.00
251_R271_V2.5311.00
69_T814_P2.5291.00
697_K700_Q2.5291.00
697_K841_T2.5061.00
247_A251_R2.4861.00
203_I208_L2.4791.00
348_M352_A2.4761.00
890_H943_L2.4471.00
586_A590_R2.4451.00
87_K103_Q2.4231.00
526_G962_L2.3981.00
695_M699_Q2.3961.00
317_T325_K2.3881.00
381_G482_I2.3771.00
689_T693_Q2.3741.00
199_N202_A2.3681.00
951_M959_Q2.3661.00
304_S308_S2.3441.00
265_L271_V2.3411.00
826_Y834_A2.3301.00
163_V324_V2.3071.00
87_K105_Q2.2941.00
255_I268_V2.2921.00
636_R639_K2.2741.00
723_D726_S2.2541.00
385_V478_V2.2501.00
156_T325_K2.2381.00
775_A778_D2.2181.00
166_M324_V2.2141.00
629_P632_E2.2061.00
690_W848_I2.1871.00
534_N954_R2.1861.00
197_K272_E2.1851.00
599_D643_R2.1691.00
912_A998_I2.1651.00
214_R764_L2.1551.00
721_N797_K2.1541.00
827_S830_D2.1131.00
198_L210_S2.0791.00
719_Y801_R2.0751.00
698_L835_I2.0641.00
598_Q647_A2.0551.00
196_V217_I2.0531.00
695_M709_S2.0501.00
957_I1020_L2.0481.00
778_D793_S2.0471.00
422_Y427_E2.0421.00
192_P273_Q2.0421.00
601_A635_D2.0381.00
572_G625_I1.9921.00
345_F349_M1.9891.00
250_Y265_L1.9621.00
603_Q628_K1.9571.00
701_L834_A1.9541.00
983_M1001_V1.9491.00
422_Y439_E1.9491.00
722_V737_V1.9481.00
156_T287_E1.9311.00
576_A580_S1.9261.00
791_P794_S1.9251.00
308_S311_Q1.9211.00
692_P695_M1.9161.00
635_D643_R1.9141.00
246_S249_E1.9101.00
706_D821_N1.9101.00
66_D70_S1.8991.00
552_L555_V1.8941.00
431_A435_K1.8831.00
596_I644_L1.8831.00
694_L839_E1.8751.00
704_L707_V1.8731.00
837_D841_T1.8641.00
520_R524_A1.8611.00
76_L80_F1.8591.00
836_M840_K1.8431.00
720_V796_A1.8411.00
954_R1020_L1.8341.00
18_M430_L1.8301.00
591_Q594_D1.8291.00
679_L694_L1.8241.00
421_R425_K1.8241.00
946_E949_Q1.8171.00
520_R523_A1.8161.00
283_W586_A1.8151.00
531_K535_H1.8151.00
35_I39_R1.8131.00
68_M72_V1.8121.00
248_E252_Q1.8061.00
690_W693_Q1.8031.00
599_D647_A1.7981.00
946_E951_M1.7951.00
214_R218_T1.7921.00
773_G776_A1.7871.00
535_H538_L1.7851.00
452_I481_L1.7841.00
270_T767_N1.7841.00
732_I782_L1.7811.00
836_M860_Q1.7731.00
595_V647_A1.7711.00
21_V882_G1.7641.00
545_S549_L1.7591.00
76_L100_I1.7591.00
40_A387_V1.7571.00
154_T327_T1.7521.00
14_R434_L1.7421.00
158_M323_S1.7361.00
695_M707_V1.7351.00
525_Y961_C1.7311.00
245_Q249_E1.7271.00
171_V316_L1.7251.00
594_D598_Q1.7241.00
551_V555_V1.7231.00
834_A837_D1.7181.00
691_V816_T1.7181.00
200_A770_N1.7171.00
418_N439_E1.7161.00
719_Y799_E1.7081.00
826_Y830_D1.7041.00
726_S729_R1.7031.00
590_R594_D1.7011.00
374_A486_V1.6991.00
191_R276_E1.6971.00
193_A763_V1.6971.00
536_P1020_L1.6961.00
304_S307_D1.6941.00
704_L831_A1.6891.00
307_D311_Q1.6891.00
80_F102_L1.6831.00
341_D345_F1.6781.00
914_S998_I1.6751.00
209_T212_T1.6731.00
833_Q836_M1.6721.00
526_G530_A1.6681.00
540_L544_L1.6671.00
589_Q607_S1.6621.00
643_R647_A1.6601.00
688_S692_P1.6581.00
203_I268_V1.6531.00
19_R886_E1.6531.00
102_L117_V1.6341.00
310_R328_V1.6221.00
531_K534_N1.6181.00
199_N270_T1.6001.00
673_T820_F1.5931.00
595_V650_K1.5811.00
834_A838_T1.5801.00
252_Q264_R1.5801.00
73_T91_S1.5771.00
642_A646_T1.5761.00
767_N770_N1.5751.00
31_L380_I1.5721.00
732_I795_I1.5641.00
697_K838_T1.5621.00
389_L478_V1.5571.00
85_G108_L1.5561.00
947_R1019_Y1.5501.00
693_Q696_E1.5491.00
703_Q834_A1.5431.00
944_A948_E1.5371.00
215_T219_G1.5361.00
80_F100_I1.5341.00
221_N751_S1.5341.00
208_L212_T1.5341.00
76_L124_A1.5321.00
585_M621_A1.5301.00
528_G531_K1.5281.00
524_A527_R1.5231.00
152_A284_A1.5211.00
37_G384_A1.5181.00
592_V648_V1.5181.00
574_L589_Q1.5171.00
559_K829_G1.5171.00
109_P112_V1.5131.00
310_R314_P1.5131.00
391_F474_I1.5111.00
244_M250_Y1.5071.00
211_E215_T1.5021.00
645_Q706_D1.5011.00
946_E959_Q1.4921.00
570_I625_I1.4921.00
574_L592_V1.4911.00
727_A732_I1.4881.00
419_I495_C1.4821.00
125_T134_N1.4791.00
540_L1021_L1.4771.00
422_Y425_K1.4741.00
421_R963_L1.4731.00
750_I764_L1.4711.00
647_A650_K1.4701.00
594_D597_L1.4691.00
737_V795_I1.4681.00
720_V798_I1.4671.00
839_E850_T1.4661.00
202_A206_L1.4561.00
954_R958_Y1.4561.00
474_I478_V1.4521.00
830_D833_Q1.4511.00
215_T218_T1.4421.00
576_A588_R1.4401.00
89_M102_L1.4361.00
547_L551_V1.4341.00
595_V599_D1.4341.00
686_A690_W1.4331.00
300_A305_T1.4331.00
783_T789_V1.4261.00
198_L203_I1.4231.00
749_L761_R1.4201.00
93_S98_S1.4191.00
217_I253_L1.4191.00
418_N421_R1.4171.00
481_L485_V1.4161.00
580_S584_N1.4151.00
897_T935_A1.4101.00
784_S788_G1.4081.00
181_V294_V1.4071.00
878_Y891_P1.4021.00
58_T76_L1.3961.00
58_T132_L1.3931.00
212_T215_T1.3911.00
587_Q591_Q1.3881.00
108_L113_A1.3871.00
154_T325_K1.3861.00
833_Q837_D1.3851.00
202_A205_A1.3821.00
696_E700_Q1.3821.00
244_M253_L1.3821.00
693_Q697_K1.3801.00
342_D345_F1.3771.00
593_A597_L1.3721.00
548_L552_L1.3651.00
681_A848_I1.3631.00
331_D334_T1.3611.00
574_L621_A1.3611.00
696_E699_Q1.3611.00
596_I602_V1.3591.00
58_T73_T1.3581.00
976_L1005_I1.3581.00
601_A640_V1.3571.00
382_T479_A1.3531.00
264_R267_D1.3521.00
524_A528_G1.3481.00
858_A861_S1.3461.00
254_I262_P1.3461.00
281_G586_A1.3451.00
219_G728_S1.3431.00
427_E431_A1.3421.00
541_S545_S1.3391.00
212_T783_T1.3381.00
238_L745_F1.3381.00
646_T649_D1.3361.00
605_L623_L1.3361.00
549_L553_L1.3301.00
415_V437_A1.3281.00
308_S312_M1.3281.00
72_V132_L1.3271.00
976_L1001_V1.3241.00
352_A356_M1.3231.00
56_V80_F1.3201.00
943_L948_E1.3201.00
25_L879_I1.3201.00
179_S308_S1.3181.00
320_L326_V1.3171.00
628_K632_E1.3141.00
54_I117_V1.3141.00
679_L687_L1.3141.00
570_I641_I1.3131.00
172_A176_S1.3091.00
197_K270_T1.3091.00
590_R593_A1.3081.00
527_R531_K1.3081.00
14_R438_G1.3061.00
355_V372_G1.3031.00
552_L556_F1.3001.00
536_P1024_R1.3001.00
838_T841_T1.3001.00
385_V389_L1.3001.00
597_L605_L1.2971.00
77_E809_H1.2971.00
74_A809_H1.2951.00
45_A567_N1.2941.00
599_D640_V1.2941.00
33_A384_A1.2901.00
153_V171_V1.2891.00
678_T810_L1.2871.00
526_G959_Q1.2861.00
165_D760_Y1.2841.00
602_V625_I1.2831.00
212_T256_A1.2821.00
541_S548_L1.2811.00
30_I381_G1.2801.00
88_Q811_D1.2791.00
85_G105_Q1.2721.00
88_Q103_Q1.2711.00
282_A291_V1.2701.00
601_A628_K1.2701.00
17_I434_L1.2681.00
691_V709_S1.2651.00
704_L820_F1.2641.00
54_I114_E1.2611.00
435_K438_G1.2591.00
68_M93_S1.2571.00
701_L838_T1.2561.00
174_K319_S1.2551.00
166_M170_R1.2551.00
64_S67_V1.2511.00
955_E959_Q1.2511.00
80_F117_V1.2501.00
24_T888_F1.2491.00
609_V621_A1.2481.00
570_I644_L1.2431.00
38_Y344_Q1.2421.00
122_N125_T1.2411.00
311_Q315_Q1.2401.00
249_E252_Q1.2351.00
776_A779_T1.2321.00
947_R1023_D1.2311.00
951_M955_E1.2301.00
603_Q626_N1.2281.00
307_D310_R1.2251.00
312_M316_L1.2251.00
377_L490_L1.2241.00
782_L795_I1.2221.00
588_R591_Q1.2211.00
313_L326_V1.2201.00
58_T135_P1.2191.00
203_I213_V1.2191.00
314_P318_E1.2161.00
942_A957_I1.2161.00
209_T783_T1.2081.00
560_G915_E1.2081.00
411_D933_K1.2071.00
37_G387_V1.2071.00
532_V1017_V1.2051.00
69_T809_H1.2051.00
717_V803_A1.2031.00
735_A739_N1.2031.00
15_L22_A1.1951.00
526_G958_Y1.1921.00
251_R270_T1.1901.00
228_S235_A1.1901.00
158_M162_Q1.1901.00
953_P957_I1.1891.00
527_R530_A1.1891.00
813_F849_T1.1881.00
931_V1007_S1.1871.00
642_A645_Q1.1871.00
422_Y435_K1.1851.00
905_A924_I1.1851.00
857_L861_S1.1811.00
732_I785_S1.1761.00
556_F910_L1.1741.00
157_A323_S1.1741.00
909_L920_A1.1721.00
703_Q826_Y1.1721.00
252_Q725_D1.1721.00
591_Q651_V1.1711.00
914_S994_R1.1661.00
587_Q590_R1.1641.00
311_Q314_P1.1631.00
969_L973_L1.1601.00
680_Q851_Q1.1591.00
254_I264_R1.1581.00
591_Q595_V1.1561.00
206_L263_I1.1551.00
181_V305_T1.1551.00
337_R341_D1.1541.00
692_P696_E1.1511.00
576_A585_M1.1501.00
56_V102_L1.1501.00
680_Q815_V1.1481.00
595_V598_Q1.1471.00
68_M98_S1.1471.00
589_Q609_V1.1471.00
959_Q962_L1.1471.00
175_I184_V1.1451.00
864_G867_V1.1431.00
158_M324_V1.1431.00
17_I493_M1.1411.00
591_Q653_G1.1391.00
544_L548_L1.1361.00
538_L541_S1.1361.00
76_L121_I1.1341.00
752_T761_R1.1331.00
523_A527_R1.1311.00
315_Q318_E1.1301.00
698_L704_L1.1271.00
430_L434_L1.1261.00
31_L35_I1.1261.00
639_K643_R1.1251.00
519_D523_A1.1251.00
120_A123_A1.1241.00
149_M309_I1.1221.00
174_K316_L1.1211.00
701_L837_D1.1151.00
781_R789_V1.1141.00
16_F23_T1.1141.00
694_L818_I1.1131.00
532_V539_T1.1131.00
679_L690_W1.1111.00
980_L1001_V1.1111.00
160_M190_Q1.1081.00
448_T484_A1.1071.00
27_M490_L1.1011.00
87_K861_S1.1001.00
685_D688_S1.0991.00
596_I623_L1.0981.00
700_Q838_T1.0971.00
301_N304_S1.0971.00
226_K240_A1.0971.00
216_A253_L1.0951.00
742_Y748_R1.0941.00
810_L853_Q1.0941.00
80_F89_M1.0931.00
635_D640_V1.0911.00
154_T287_E1.0901.00
449_F880_V1.0901.00
79_Q124_A1.0891.00
382_T478_V1.0891.00
306_A333_T1.0871.00
724_R734_M1.0841.00
516_K520_R1.0831.00
638_Q642_A1.0811.00
779_T793_S1.0801.00
853_Q857_L1.0801.00
681_A686_A1.0781.00
151_L326_V1.0761.00
944_A949_Q1.0731.00
151_L328_V1.0721.00
418_N941_F1.0651.00
391_F397_T1.0631.00
197_K767_N1.0631.00
69_T807_I1.0601.00
90_S103_Q1.0591.00
686_A848_I1.0591.00
743_N748_R1.0541.00
907_L911_I1.0541.00
86_L89_M1.0531.00
22_A883_I1.0531.00
118_Q122_N1.0491.00
595_V651_V1.0491.00
635_D639_K1.0471.00
195_R765_E1.0461.00
699_Q707_V1.0451.00
342_D993_R1.0451.00
153_V326_V1.0451.00
543_A1014_T1.0441.00
373_V494_M1.0431.00
317_T326_V1.0411.00
12_P16_F1.0401.00
184_V292_M1.0401.00
574_L656_L1.0401.00
164_E189_G1.0401.00
495_C499_L1.0391.00
142_N145_D1.0391.00
943_L947_R1.0381.00
60_Y63_A1.0381.00
517_M520_R1.0381.00
822_V831_A1.0381.00
908_A998_I1.0341.00
239_S717_V1.0341.00
690_W844_L1.0341.00
639_K642_A1.0321.00
193_A276_E1.0321.00
676_Q817_T1.0301.00
79_Q123_A1.0301.00
548_L551_V1.0301.00
784_S787_G1.0291.00
211_E736_D1.0281.00
973_L977_L1.0261.00
534_N537_W1.0251.00
643_R646_T1.0231.00
949_Q959_Q1.0211.00
570_I627_L1.0201.00
537_W1021_L1.0191.00
514_S518_F1.0171.00
560_G917_D1.0171.00
553_L907_L1.0151.00
89_M812_Q1.0151.00
522_I526_G1.0131.00
57_V97_A1.0121.00
264_R725_D1.0091.00
431_A434_L1.0091.00
156_T323_S1.0071.00
92_Q101_T1.0071.00
545_S548_L1.0071.00
374_A491_T1.0061.00
108_L116_E1.0051.00
283_W590_R1.0051.00
418_N422_Y1.0041.00
91_S809_H1.0031.00
900_T1010_L1.0021.00
564_V638_Q1.0021.00
677_F698_L1.0011.00
588_R651_V1.0001.00
703_Q823_P1.0001.00
593_A607_S0.9981.00
77_E91_S0.9971.00
265_L269_A0.9941.00
164_E168_E0.9941.00
344_Q348_M0.9941.00
972_T1008_Q0.9921.00
112_V116_E0.9901.00
420_S424_E0.9891.00
765_E771_T0.9861.00
56_V76_L0.9851.00
637_V641_I0.9851.00
941_F963_L0.9851.00
213_V268_V0.9831.00
529_L533_L0.9831.00
542_V549_L0.9821.00
772_P776_A0.9811.00
581_S584_N0.9801.00
447_L484_A0.9801.00
306_A310_R0.9791.00
695_M818_I0.9781.00
140_K148_I0.9781.00
592_V651_V0.9781.00
91_S100_I0.9771.00
893_T1018_I0.9771.00
537_W541_S0.9761.00
593_A605_L0.9751.00
976_L1004_L0.9751.00
172_A184_V0.9731.00
255_I263_I0.9721.00
149_M310_R0.9711.00
250_Y762_V0.9711.00
423_I429_P0.9711.00
965_F969_L0.9711.00
187_S293_N0.9701.00
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426_G433_A0.5060.93
27_M30_I0.5060.93
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486_V491_T0.5040.93
705_S824_D0.5040.93
400_A475_T0.5040.93
187_S291_V0.5040.93
835_I839_E0.5030.93
32_L875_V0.5030.93
175_I178_I0.5030.93
947_R950_G0.5020.93
996_L1000_M0.5020.93
514_S517_M0.5020.93
140_K147_P0.5020.93
703_Q838_T0.5020.93
165_D758_N0.5010.93
580_S588_R0.5010.93
640_V647_A0.5010.93
593_A609_V0.5000.92
602_V627_L0.5000.92
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4k0jA 3 0.9269 100 0.224 Contact Map
4mt1A 3 0.9558 100 0.287 Contact Map
3ne5A 3 0.9558 100 0.293 Contact Map
3w9iA 3 0.9712 100 0.294 Contact Map
4dx5A 3 0.9798 100 0.308 Contact Map
3aqpA 1 0.676 100 0.727 Contact Map
4r86A 1 0.276 100 0.754 Contact Map
2ew9A 1 0.1423 81.2 0.982 Contact Map
3cq1A 2 0.0933 63.4 0.985 Contact Map
4n8nA 1 0.0962 60.8 0.985 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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