DDPA - ECOLI - GREMLIN Contacts

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DDPA - Probable D,D-dipeptide-binding periplasmic protein DdpA

UniProt:	P76128	Sequences: MKRSISFRPTLLALVLATNFPVAHAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYPGNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLRVTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATAMQYNHDETKAKAEWDKVTSKPTSLTFLYSDNDPNWEPIALATQSSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQVFNINTMSK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13790
Length:	516 (484)
Sequences:	22979 (17451)
Seq/√Len:	793.2

ECOLI - DDPA SAPA DPPA GSIB YGIS MPPA OPPA NIKA YEJA YBAE SGRR
BACSU - APPA OPPA DPPE YHJP
HALSA - Q9HMI3 Q9HMW4
SULSO - Q97VF7 Q97UG7 Q97VK5 Q97UH5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
201_K	212_V	4.167	1.00
143_P	149_K	3.183	1.00
101_D	146_H	3.142	1.00
357_S	386_I	3.044	1.00
141_D	149_K	2.974	1.00
343_K	346_A	2.924	1.00
293_D	350_K	2.816	1.00
117_K	121_E	2.790	1.00
449_K	453_N	2.748	1.00
144_D	147_T	2.718	1.00
300_W	343_K	2.614	1.00
199_M	212_V	2.594	1.00
359_T	390_E	2.578	1.00
357_S	388_K	2.578	1.00
85_S	98_T	2.576	1.00
31_M	226_R	2.572	1.00
94_E	149_K	2.481	1.00
457_T	462_Q	2.479	1.00
117_K	142_A	2.475	1.00
305_Q	309_N	2.447	1.00
359_T	388_K	2.402	1.00
96_T	149_K	2.374	1.00
346_A	350_K	2.356	1.00
287_A	290_N	2.356	1.00
141_D	151_T	2.348	1.00
446_E	449_K	2.283	1.00
94_E	151_T	2.259	1.00
430_S	443_E	2.250	1.00
453_N	466_D	2.245	1.00
210_V	226_R	2.237	1.00
109_T	174_A	2.228	1.00
173_P	177_K	2.217	1.00
292_A	296_R	2.209	1.00
303_D	306_G	2.205	1.00
68_K	77_D	2.203	1.00
104_K	216_H	2.179	1.00
298_I	380_L	2.160	1.00
87_K	98_T	2.151	1.00
462_Q	465_R	2.149	1.00
65_V	86_W	2.068	1.00
104_K	110_P	2.052	1.00
293_D	296_R	2.044	1.00
241_Q	246_D	2.044	1.00
98_T	147_T	2.016	1.00
381_N	386_I	2.006	1.00
106_A	214_N	2.002	1.00
68_K	79_E	2.002	1.00
459_D	462_Q	1.985	1.00
114_E	142_A	1.984	1.00
111_V	195_S	1.976	1.00
286_K	407_D	1.947	1.00
89_S	93_K	1.923	1.00
31_M	228_S	1.916	1.00
293_D	347_E	1.911	1.00
62_Q	81_D	1.907	1.00
202_S	210_V	1.895	1.00
204_Q	207_Q	1.885	1.00
88_A	95_W	1.882	1.00
138_L	153_S	1.872	1.00
292_A	477_D	1.867	1.00
139_K	151_T	1.866	1.00
446_E	473_I	1.851	1.00
114_E	173_P	1.844	1.00
450_L	469_Q	1.843	1.00
442_Y	477_D	1.832	1.00
35_G	247_I	1.824	1.00
465_R	469_Q	1.806	1.00
212_V	226_R	1.805	1.00
444_N	477_D	1.783	1.00
208_Q	228_S	1.774	1.00
301_S	383_L	1.766	1.00
202_S	208_Q	1.741	1.00
444_N	473_I	1.730	1.00
282_L	481_V	1.719	1.00
33_V	228_S	1.714	1.00
204_Q	208_Q	1.705	1.00
103_A	111_V	1.699	1.00
400_R	405_D	1.693	1.00
377_Q	381_N	1.684	1.00
454_A	467_Y	1.676	1.00
430_S	448_D	1.676	1.00
84_S	98_T	1.675	1.00
84_S	101_D	1.673	1.00
199_M	215_P	1.673	1.00
446_E	469_Q	1.672	1.00
305_Q	318_Q	1.651	1.00
210_V	228_S	1.644	1.00
120_F	150_F	1.642	1.00
447_V	470_A	1.628	1.00
114_E	117_K	1.616	1.00
464_T	468_Q	1.595	1.00
112_T	145_E	1.590	1.00
472_K	476_D	1.582	1.00
399_D	403_K	1.569	1.00
319_M	485_Q	1.562	1.00
112_T	115_A	1.561	1.00
340_D	343_K	1.560	1.00
213_P	225_K	1.559	1.00
201_K	226_R	1.556	1.00
445_S	449_K	1.556	1.00
349_D	354_K	1.541	1.00
30_D	225_K	1.540	1.00
296_R	478_A	1.538	1.00
96_T	147_T	1.537	1.00
454_A	466_D	1.533	1.00
44_D	122_R	1.532	1.00
84_S	100_K	1.526	1.00
102_N	110_P	1.517	1.00
116_V	148_V	1.512	1.00
466_D	469_Q	1.511	1.00
114_E	145_E	1.507	1.00
285_S	441_F	1.494	1.00
302_T	376_T	1.476	1.00
109_T	172_N	1.472	1.00
70_D	77_D	1.472	1.00
243_S	260_A	1.471	1.00
342_T	345_K	1.471	1.00
370_E	374_L	1.462	1.00
89_S	94_E	1.458	1.00
393_A	396_T	1.454	1.00
469_Q	472_K	1.454	1.00
115_A	173_P	1.452	1.00
457_T	466_D	1.441	1.00
450_L	466_D	1.440	1.00
89_S	96_T	1.433	1.00
201_K	210_V	1.433	1.00
465_R	468_Q	1.431	1.00
296_R	343_K	1.420	1.00
429_E	452_R	1.405	1.00
259_N	262_K	1.405	1.00
292_A	476_D	1.394	1.00
379_S	382_K	1.384	1.00
473_I	477_D	1.382	1.00
232_I	241_Q	1.370	1.00
107_D	172_N	1.368	1.00
268_N	494_K	1.365	1.00
143_P	147_T	1.355	1.00
142_A	145_E	1.354	1.00
289_L	358_L	1.351	1.00
282_L	408_I	1.346	1.00
462_Q	466_D	1.340	1.00
450_L	473_I	1.332	1.00
299_S	478_A	1.332	1.00
198_F	224_F	1.330	1.00
345_K	349_D	1.329	1.00
33_V	230_K	1.325	1.00
113_A	142_A	1.322	1.00
461_T	464_T	1.315	1.00
154_Q	456_A	1.313	1.00
390_E	400_R	1.308	1.00
443_E	448_D	1.305	1.00
66_Q	81_D	1.303	1.00
172_N	175_V	1.296	1.00
138_L	151_T	1.295	1.00
355_P	386_I	1.295	1.00
298_I	385_I	1.293	1.00
117_K	140_I	1.293	1.00
378_S	382_K	1.289	1.00
306_G	379_S	1.283	1.00
449_K	452_R	1.281	1.00
65_V	97_F	1.280	1.00
62_Q	218_P	1.279	1.00
270_A	492_M	1.263	1.00
308_V	318_Q	1.263	1.00
208_Q	230_K	1.255	1.00
32_L	249_I	1.247	1.00
50_D	53_D	1.247	1.00
106_A	199_M	1.244	1.00
110_P	146_H	1.235	1.00
104_K	214_N	1.234	1.00
33_V	248_D	1.224	1.00
62_Q	195_S	1.223	1.00
473_I	476_D	1.223	1.00
362_Y	389_L	1.217	1.00
347_E	350_K	1.215	1.00
341_E	345_K	1.214	1.00
446_E	450_L	1.213	1.00
375_A	379_S	1.212	1.00
271_E	487_N	1.210	1.00
121_E	125_K	1.208	1.00
453_N	462_Q	1.206	1.00
360_F	387_V	1.200	1.00
243_S	264_E	1.199	1.00
266_K	494_K	1.199	1.00
66_Q	79_E	1.191	1.00
453_N	457_T	1.190	1.00
362_Y	391_K	1.190	1.00
98_T	146_H	1.186	1.00
404_G	441_F	1.183	1.00
241_Q	247_I	1.180	1.00
358_L	387_V	1.176	1.00
86_W	97_F	1.173	1.00
268_N	492_M	1.172	1.00
35_G	238_R	1.164	1.00
331_D	468_Q	1.164	1.00
80_G	86_W	1.162	1.00
325_E	485_Q	1.161	1.00
461_T	465_R	1.155	1.00
292_A	478_A	1.151	1.00
111_V	170_I	1.148	1.00
281_Y	409_A	1.145	1.00
211_L	229_V	1.145	1.00
452_R	456_A	1.142	1.00
294_L	348_W	1.141	1.00
294_L	351_V	1.140	1.00
377_Q	389_L	1.136	1.00
380_L	387_V	1.136	1.00
121_E	124_L	1.134	1.00
107_D	174_A	1.134	1.00
110_P	145_E	1.133	1.00
259_N	263_Q	1.126	1.00
100_K	103_A	1.126	1.00
346_A	349_D	1.126	1.00
106_A	216_H	1.124	1.00
442_Y	447_V	1.123	1.00
342_T	346_A	1.119	1.00
248_D	493_N	1.118	1.00
450_L	470_A	1.115	1.00
150_F	159_F	1.112	1.00
87_K	96_T	1.110	1.00
341_E	383_L	1.108	1.00
82_L	103_A	1.104	1.00
114_E	118_L	1.102	1.00
296_R	347_E	1.101	1.00
15_V	18_T	1.101	1.00
317_K	487_N	1.097	1.00
358_L	408_I	1.097	1.00
308_V	316_G	1.094	1.00
450_L	453_N	1.093	1.00
394_N	398_R	1.091	1.00
140_I	148_V	1.089	1.00
11_L	14_L	1.078	1.00
175_V	193_A	1.077	1.00
103_A	195_S	1.077	1.00
199_M	214_N	1.074	1.00
119_S	170_I	1.072	1.00
460_Q	464_T	1.065	1.00
248_D	495_E	1.063	1.00
296_R	300_W	1.059	1.00
377_Q	387_V	1.056	1.00
362_Y	373_A	1.055	1.00
242_L	491_A	1.054	1.00
100_K	218_P	1.051	1.00
106_A	193_A	1.049	1.00
289_L	298_I	1.041	1.00
376_T	380_L	1.039	1.00
95_W	159_F	1.034	1.00
306_G	310_G	1.032	1.00
312_L	484_F	1.029	1.00
188_L	192_T	1.027	1.00
301_S	380_L	1.027	1.00
286_K	290_N	1.026	1.00
419_D	463_R	1.025	1.00
343_K	347_E	1.023	1.00
118_L	173_P	1.023	1.00
453_N	469_Q	1.022	1.00
82_L	116_V	1.021	1.00
392_L	400_R	1.020	1.00
378_S	381_N	1.016	1.00
213_P	222_P	1.011	1.00
56_V	211_L	1.008	1.00
97_F	150_F	1.000	1.00
309_N	314_G	0.998	1.00
174_A	178_E	0.997	1.00
401_V	409_A	0.995	1.00
239_R	243_S	0.992	1.00
32_L	224_F	0.992	1.00
331_D	472_K	0.986	1.00
82_L	195_S	0.983	1.00
29_K	225_K	0.983	1.00
159_F	163_L	0.982	1.00
83_A	97_F	0.982	1.00
308_V	484_F	0.979	1.00
240_L	243_S	0.978	1.00
32_L	496_V	0.967	1.00
396_T	399_D	0.964	1.00
96_T	143_P	0.962	1.00
341_E	382_K	0.960	1.00
468_Q	472_K	0.948	1.00
296_R	476_D	0.946	1.00
95_W	160_L	0.945	1.00
373_A	389_L	0.943	1.00
116_V	170_I	0.938	1.00
307_M	372_I	0.938	1.00
421_Y	455_L	0.935	1.00
356_T	385_I	0.931	1.00
65_V	78_V	0.931	1.00
262_K	271_E	0.931	1.00
257_Q	260_A	0.931	1.00
299_S	481_V	0.929	1.00
60_S	211_L	0.927	1.00
371_P	374_L	0.927	1.00
317_K	325_E	0.926	1.00
113_A	148_V	0.921	1.00
361_L	400_R	0.921	1.00
429_E	448_D	0.918	1.00
447_V	473_I	0.918	1.00
63_R	81_D	0.917	1.00
425_N	455_L	0.917	1.00
10_T	13_A	0.916	1.00
361_L	390_E	0.915	1.00
105_F	115_A	0.913	1.00
453_N	456_A	0.913	1.00
107_D	193_A	0.911	1.00
359_T	407_D	0.909	1.00
447_V	474_V	0.908	1.00
353_S	356_T	0.908	1.00
14_L	18_T	0.907	1.00
156_F	162_T	0.906	1.00
84_S	146_H	0.905	1.00
237_S	241_Q	0.901	1.00
88_A	92_Q	0.900	1.00
282_L	298_I	0.899	1.00
95_W	152_L	0.897	1.00
239_R	261_L	0.897	1.00
454_A	470_A	0.896	1.00
293_D	351_V	0.893	1.00
370_E	391_K	0.892	1.00
65_V	160_L	0.889	1.00
442_Y	479_A	0.886	1.00
101_D	110_P	0.885	1.00
39_D	203_W	0.885	1.00
198_F	222_P	0.884	1.00
98_T	101_D	0.881	1.00
136_K	156_F	0.881	1.00
259_N	313_S	0.877	1.00
291_Q	351_V	0.875	1.00
212_V	215_P	0.874	1.00
299_S	304_Y	0.873	1.00
261_L	267_V	0.869	1.00
203_W	209_L	0.869	1.00
361_L	392_L	0.866	1.00
63_R	169_S	0.864	1.00
98_T	144_D	0.864	1.00
115_A	118_L	0.863	1.00
28_P	223_N	0.863	1.00
121_E	140_I	0.856	1.00
247_I	250_A	0.856	1.00
344_A	383_L	0.853	1.00
14_L	17_A	0.853	1.00
152_L	159_F	0.853	1.00
281_Y	440_S	0.852	1.00
93_K	154_Q	0.852	1.00
447_V	451_L	0.851	1.00
451_L	470_A	0.851	1.00
396_T	400_R	0.847	1.00
425_N	429_E	0.847	1.00
136_K	154_Q	0.844	1.00
339_H	382_K	0.842	1.00
89_S	92_Q	0.841	1.00
242_L	267_V	0.836	1.00
65_V	83_A	0.835	1.00
300_W	347_E	0.831	1.00
91_D	94_E	0.830	1.00
13_A	16_L	0.827	1.00
232_I	247_I	0.826	1.00
59_P	211_L	0.824	1.00
304_Y	318_Q	0.822	1.00
303_D	379_S	0.821	1.00
69_T	500_V	0.821	1.00
469_Q	473_I	0.819	1.00
421_Y	425_N	0.817	1.00
238_R	250_A	0.813	1.00
118_L	176_L	0.807	1.00
187_F	191_N	0.806	1.00
113_A	143_P	0.806	1.00
16_L	19_N	0.805	1.00
267_V	491_A	0.805	1.00
312_L	316_G	0.802	1.00
347_E	351_V	0.801	1.00
254_P	257_Q	0.801	1.00
240_L	244_R	0.798	1.00
242_L	250_A	0.796	1.00
62_Q	217_Y	0.795	1.00
276_R	414_S	0.795	1.00
271_E	315_N	0.795	1.00
280_L	376_T	0.793	1.00
106_A	194_G	0.792	1.00
136_K	153_S	0.789	1.00
60_S	200_L	0.785	1.00
46_A	122_R	0.784	1.00
273_P	487_N	0.784	1.00
71_G	77_D	0.783	1.00
93_K	151_T	0.783	1.00
158_P	419_D	0.781	1.00
213_P	221_K	0.779	1.00
280_L	408_I	0.778	1.00
46_A	123_L	0.777	1.00
230_K	241_Q	0.776	1.00
445_S	448_D	0.773	1.00
117_K	148_V	0.772	1.00
34_I	249_I	0.771	1.00
470_A	473_I	0.770	1.00
258_L	262_K	0.769	1.00
27_V	30_D	0.769	1.00
438_N	441_F	0.769	1.00
302_T	307_M	0.766	1.00
360_F	373_A	0.766	1.00
187_F	190_Q	0.763	1.00
213_P	224_F	0.763	1.00
97_F	160_L	0.763	1.00
211_L	227_V	0.762	1.00
215_P	225_K	0.762	1.00
329_G	464_T	0.760	1.00
291_Q	353_S	0.758	1.00
137_D	140_I	0.758	1.00
142_A	148_V	0.756	1.00
48_T	57_T	0.752	1.00
103_A	146_H	0.751	1.00
361_L	406_Y	0.751	1.00
106_A	200_L	0.750	1.00
303_D	339_H	0.748	1.00
300_W	339_H	0.747	1.00
294_L	353_S	0.746	1.00
294_L	356_T	0.744	1.00
61_Y	194_G	0.744	1.00
82_L	111_V	0.742	1.00
18_T	21_P	0.741	1.00
271_E	489_Q	0.741	1.00
374_L	377_Q	0.738	1.00
175_V	179_H	0.738	1.00
93_K	138_L	0.736	1.00
300_W	337_Y	0.736	1.00
174_A	177_K	0.734	1.00
81_D	218_P	0.732	1.00
261_L	491_A	0.731	1.00
448_D	452_R	0.730	1.00
39_D	231_I	0.728	1.00
8_R	12_L	0.727	1.00
188_L	191_N	0.727	1.00
285_S	404_G	0.726	1.00
297_A	348_W	0.722	1.00
302_T	380_L	0.721	1.00
264_E	267_V	0.719	1.00
365_N	370_E	0.719	1.00
421_Y	467_Y	0.718	1.00
381_N	387_V	0.718	1.00
125_K	128_Q	0.715	1.00
452_R	455_L	0.715	1.00
68_K	71_G	0.714	1.00
282_L	289_L	0.712	1.00
157_A	463_R	0.712	1.00
392_L	396_T	0.710	1.00
307_M	375_A	0.710	1.00
102_N	146_H	0.704	1.00
200_L	209_L	0.703	1.00
298_I	358_L	0.702	1.00
301_S	341_E	0.700	1.00
360_F	410_I	0.700	1.00
7_F	10_T	0.700	1.00
59_P	227_V	0.700	1.00
39_D	205_K	0.699	1.00
322_P	482_Y	0.697	1.00
30_D	224_F	0.695	1.00
93_K	155_P	0.695	1.00
492_M	499_F	0.695	1.00
64_L	83_A	0.693	1.00
374_L	378_S	0.690	1.00
328_W	460_Q	0.688	1.00
103_A	218_P	0.687	1.00
115_A	119_S	0.687	1.00
142_A	149_K	0.686	1.00
374_L	389_L	0.686	1.00
284_N	479_A	0.685	1.00
366_D	369_W	0.684	1.00
301_S	339_H	0.684	1.00
278_T	369_W	0.684	1.00
199_M	216_H	0.684	1.00
118_L	177_K	0.683	1.00
333_T	468_Q	0.683	1.00
380_L	385_I	0.682	1.00
321_G	471_Q	0.682	1.00
113_A	117_K	0.680	1.00
381_N	385_I	0.680	1.00
86_W	160_L	0.679	1.00
298_I	481_V	0.679	1.00
190_Q	205_K	0.677	1.00
213_P	220_N	0.674	1.00
362_Y	370_E	0.674	1.00
234_E	237_S	0.672	1.00
305_Q	308_V	0.670	1.00
119_S	171_I	0.669	1.00
112_T	146_H	0.667	1.00
300_W	338_N	0.666	1.00
307_M	376_T	0.665	1.00
61_Y	192_T	0.664	1.00
266_K	493_N	0.664	1.00
288_P	356_T	0.664	1.00
56_V	209_L	0.663	1.00
348_W	351_V	0.663	1.00
493_N	496_V	0.663	1.00
351_V	354_K	0.662	1.00
67_Y	78_V	0.661	1.00
232_I	238_R	0.661	1.00
345_K	383_L	0.660	1.00
250_A	253_L	0.660	1.00
298_I	408_I	0.656	1.00
348_W	383_L	0.655	1.00
60_S	194_G	0.654	1.00
416_D	422_M	0.654	1.00
392_L	397_M	0.653	1.00
428_F	474_V	0.652	1.00
428_F	480_Y	0.651	1.00
380_L	408_I	0.649	1.00
397_M	409_A	0.647	1.00
60_S	192_T	0.647	1.00
348_W	385_I	0.646	1.00
348_W	353_S	0.646	1.00
7_F	13_A	0.646	1.00
105_F	170_I	0.645	1.00
121_E	173_P	0.645	1.00
198_F	213_P	0.644	1.00
463_R	467_Y	0.643	1.00
117_K	141_D	0.642	1.00
121_E	139_K	0.642	1.00
209_L	231_I	0.641	1.00
315_N	489_Q	0.640	1.00
207_Q	230_K	0.640	1.00
245_G	493_N	0.638	1.00
97_F	148_V	0.637	1.00
32_L	227_V	0.637	1.00
262_K	315_N	0.637	1.00
41_Q	53_D	0.636	1.00
353_S	385_I	0.636	1.00
200_L	203_W	0.636	1.00
212_V	225_K	0.636	1.00
179_H	191_N	0.635	1.00
239_R	257_Q	0.634	1.00
124_L	153_S	0.633	1.00
277_V	319_M	0.631	1.00
140_I	150_F	0.630	1.00
11_L	15_V	0.628	1.00
429_E	451_L	0.628	1.00
88_A	160_L	0.626	1.00
235_S	238_R	0.625	1.00
363_S	369_W	0.624	1.00
78_V	160_L	0.624	1.00
61_Y	195_S	0.623	1.00
372_I	484_F	0.622	1.00
67_Y	164_A	0.620	1.00
172_N	193_A	0.620	1.00
284_N	440_S	0.619	1.00
399_D	402_G	0.617	1.00
460_Q	463_R	0.616	1.00
97_F	163_L	0.615	1.00
120_F	163_L	0.615	1.00
219_G	222_P	0.613	1.00
26_A	29_K	0.612	1.00
291_Q	294_L	0.611	1.00
99_L	111_V	0.611	1.00
308_V	312_L	0.610	1.00
105_F	111_V	0.609	1.00
26_A	223_N	0.609	1.00
279_Y	480_Y	0.608	1.00
87_K	90_D	0.607	1.00
105_F	195_S	0.606	1.00
35_G	232_I	0.606	1.00
113_A	146_H	0.606	1.00
25_A	28_P	0.604	1.00
380_L	383_L	0.603	1.00
12_L	15_V	0.603	1.00
118_L	122_R	0.602	1.00
17_A	20_F	0.601	1.00
41_Q	50_D	0.600	1.00
447_V	450_L	0.599	1.00
179_H	187_F	0.599	1.00
286_K	405_D	0.598	1.00
214_N	217_Y	0.597	1.00
289_L	294_L	0.597	1.00
302_T	481_V	0.597	1.00
429_E	443_E	0.596	1.00
363_S	397_M	0.596	1.00
372_I	376_T	0.595	1.00
331_D	471_Q	0.593	1.00
335_M	338_N	0.593	1.00
113_A	144_D	0.593	1.00
249_I	492_M	0.592	1.00
45_P	171_I	0.592	1.00
442_Y	473_I	0.592	1.00
66_Q	219_G	0.592	1.00
285_S	290_N	0.591	1.00
105_F	112_T	0.590	1.00
280_L	483_L	0.589	1.00
296_R	337_Y	0.589	1.00
90_D	94_E	0.589	1.00
315_N	487_N	0.588	1.00
48_T	53_D	0.587	1.00
280_L	360_F	0.587	1.00
466_D	470_A	0.587	1.00
376_T	387_V	0.586	1.00
236_A	240_L	0.586	1.00
253_L	491_A	0.585	1.00
348_W	356_T	0.584	1.00
80_G	85_S	0.584	1.00
273_P	317_K	0.584	1.00
265_N	494_K	0.584	1.00
343_K	350_K	0.582	1.00
278_T	372_I	0.582	1.00
268_N	497_K	0.581	1.00
112_T	173_P	0.580	1.00
8_R	11_L	0.577	1.00
458_T	462_Q	0.575	1.00
42_T	189_A	0.574	1.00
111_V	116_V	0.574	1.00
424_M	470_A	0.573	1.00
320_R	336_Q	0.572	1.00
7_F	11_L	0.569	1.00
334_A	475_I	0.569	1.00
367_P	371_P	0.569	1.00
428_F	452_R	0.568	1.00
300_W	340_D	0.568	1.00
336_Q	475_I	0.567	1.00
31_M	210_V	0.566	1.00
334_A	337_Y	0.566	1.00
43_L	209_L	0.565	1.00
64_L	116_V	0.564	1.00
260_A	263_Q	0.564	1.00
306_G	375_A	0.564	1.00
249_I	496_V	0.563	1.00
236_A	257_Q	0.563	1.00
126_I	129_G	0.562	1.00
109_T	115_A	0.562	1.00
242_L	493_N	0.562	1.00
82_L	170_I	0.560	1.00
36_K	229_V	0.560	1.00
328_W	464_T	0.559	1.00
286_K	289_L	0.559	1.00
285_S	443_E	0.558	1.00
224_F	496_V	0.558	1.00
364_D	370_E	0.557	1.00
242_L	247_I	0.557	1.00
105_F	194_G	0.555	1.00
349_D	353_S	0.555	1.00
241_Q	244_R	0.555	1.00
30_D	223_N	0.554	1.00
260_A	264_E	0.553	1.00
363_S	366_D	0.553	1.00
9_P	12_L	0.552	1.00
300_W	344_A	0.552	1.00
387_V	408_I	0.552	1.00
135_P	138_L	0.552	1.00
435_L	438_N	0.551	1.00
291_Q	352_T	0.550	1.00
253_L	258_L	0.550	1.00
394_N	411_G	0.550	1.00
471_Q	475_I	0.549	1.00
99_L	146_H	0.547	1.00
339_H	379_S	0.547	1.00
21_P	24_H	0.546	1.00
280_L	481_V	0.545	1.00
282_L	299_S	0.544	1.00
59_P	229_V	0.543	1.00
278_T	486_K	0.543	1.00
99_L	116_V	0.541	1.00
33_V	36_K	0.540	1.00
478_A	481_V	0.540	1.00
258_L	489_Q	0.539	1.00
10_T	14_L	0.539	1.00
454_A	463_R	0.537	1.00
249_I	490_L	0.537	1.00
43_L	203_W	0.536	1.00
479_A	482_Y	0.535	1.00
230_K	246_D	0.534	1.00
413_W	416_D	0.534	1.00
305_Q	338_N	0.534	1.00
278_T	484_F	0.533	1.00
80_G	83_A	0.533	1.00
121_E	136_K	0.532	1.00
302_T	483_L	0.532	1.00
36_K	40_P	0.531	1.00
62_Q	219_G	0.531	1.00
107_D	175_V	0.530	1.00
105_F	174_A	0.530	1.00
12_L	16_L	0.529	1.00
192_T	200_L	0.528	1.00
438_N	442_Y	0.528	1.00
444_N	447_V	0.527	1.00
110_P	115_A	0.527	1.00
364_D	391_K	0.526	1.00
440_S	480_Y	0.526	1.00
375_A	378_S	0.526	1.00
26_A	30_D	0.526	1.00
333_T	472_K	0.526	1.00
92_Q	458_T	0.525	1.00
171_I	176_L	0.525	1.00
111_V	119_S	0.525	1.00
307_M	483_L	0.524	1.00
284_N	290_N	0.523	1.00
398_R	401_V	0.523	1.00
111_V	146_H	0.522	1.00
490_L	499_F	0.521	1.00
341_E	348_W	0.519	1.00
410_I	483_L	0.519	1.00
311_I	375_A	0.519	1.00
123_L	167_G	0.517	1.00
340_D	346_A	0.515	1.00
468_Q	471_Q	0.515	1.00
373_A	410_I	0.514	1.00
289_L	408_I	0.514	1.00
307_M	311_I	0.513	1.00
253_L	261_L	0.513	1.00
154_Q	452_R	0.512	1.00
56_V	229_V	0.512	1.00
258_L	269_V	0.512	1.00
496_V	499_F	0.510	1.00
364_D	393_A	0.510	1.00
274_S	488_Y	0.509	1.00
475_I	478_A	0.508	1.00
18_T	22_V	0.508	1.00
42_T	47_V	0.508	1.00
315_N	318_Q	0.507	1.00
424_M	427_W	0.507	1.00
50_D	394_N	0.507	1.00
457_T	460_Q	0.507	1.00
111_V	115_A	0.507	1.00
367_P	370_E	0.505	1.00
78_V	161_Y	0.504	1.00
360_F	408_I	0.503	1.00
446_E	476_D	0.503	1.00
109_T	173_P	0.502	1.00
388_K	391_K	0.502	1.00
324_P	327_M	0.501	1.00
379_S	383_L	0.500	1.00
33_V	247_I	0.500	1.00
294_L	298_I	0.500	1.00
297_A	344_A	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4qflA	1	0.9341	100	0.09	Contact Map
1xocA	2	0.9341	100	0.134	Contact Map
3m8uA	1	0.9341	100	0.134	Contact Map
1dpeA	1	0.9322	100	0.135	Contact Map
3tpaA	1	0.9322	100	0.14	Contact Map
3zs6A	1	0.9244	100	0.141	Contact Map
4fajA	1	0.9089	100	0.143	Contact Map
4wedA	1	0.8953	100	0.143	Contact Map
4tozA	1	0.938	100	0.148	Contact Map
1uqwA	1	0.9244	100	0.149	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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