PAAK - ECOLI - GREMLIN Contacts

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PAAK - Phenylacetate-coenzyme A ligase

UniProt:	P76085	Sequences: MITNTKLDPIETASVDELQALQTQRLKWTLKHAYENVPMYRRKFDAAGVHPDDFRELSDLRKFPCTTKQDLRDNYPFDTFAVPMEQVVRIHASSGTTGKPTVVGYTQNDIDNWANIVARSLRAAGGSPKDKIHVAYGYGLFTGGLGAHYGAERLGATVIPMSGGQTEKQAQLIRDFQPDMIMVTPSYCLNLIEELERQLGGDASGCSLRVGVFGAEPWTQAMRKEIERRLGITALDIYGLSEVMGPGVAMECLETTDGPTIWEDHFYPEIVNPHDGTPLADGEHGELLFTTLTKEALPVIRYRTRDLTRLLPGTARTMRRMDRISGRSDDMLIIRGVNVFPSQLEEEIVKFEHLSPHYQLEVNRRGHLDSLSVKVELKESSLTLTHEQRCQVCHQLRHRIKSMVGISTDVMIVNCGSIPRSEGKACRVFDLRNIVGA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13745
Length:	437 (377)
Sequences:	70086 (50921)
Seq/√Len:	2622.5

ECOLI - PAAK ENTF AAS ACSA LCFA ENTE PRPE FADK CAIC MENE
BACSU - PPSE SRFAC LCFA LCFB ACSA YNGI DHBE YTCI YDAB YHFT MENE PPSB PPSC DLTA DHBF
HALSA - Q9HRY8 Q9HSM3 Q9HQU8 Q9HNK0 Q9HQ43 Q9HQN8
SULSO - Q97UX8 Q97XW5 Q97VT6 Q97U22 Q97WQ0 Q97UW7 Q97YK9 Q97UF6 Q97VU7 Q97WQ9 Q97WK0 Q97XW4 Q97V27 Q97WS5 Q980E4 Q97VJ6 Q97X52 Q97WU3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
87_V	104_G	4.193	1.00
351_F	395_Q	3.382	1.00
309_R	323_R	3.085	1.00
267_Y	290_T	3.051	1.00
286_E	303_R	2.789	1.00
287_L	308_T	2.786	1.00
333_I	338_N	2.699	1.00
131_K	157_T	2.689	1.00
271_V	288_L	2.601	1.00
269_E	278_P	2.595	1.00
426_C	429_F	2.574	1.00
32_H	92_A	2.564	1.00
356_P	420_R	2.496	1.00
311_L	323_R	2.486	1.00
288_L	303_R	2.441	1.00
349_V	357_H	2.437	1.00
330_D	427_R	2.397	1.00
309_R	325_S	2.389	1.00
348_I	373_V	2.381	1.00
372_S	413_V	2.378	1.00
272_N	277_T	2.223	1.00
284_H	307_L	2.208	1.00
350_K	399_R	2.145	1.00
258_G	323_R	2.114	1.00
311_L	315_A	2.098	1.00
177_Q	207_S	2.091	1.00
220_Q	224_K	2.089	1.00
83_P	86_Q	2.050	1.00
269_E	288_L	2.039	1.00
171_Q	175_D	2.018	1.00
355_S	378_K	1.974	1.00
272_N	275_D	1.966	1.00
429_F	432_R	1.963	1.00
343_Q	407_S	1.888	1.00
92_A	102_V	1.884	1.00
284_H	325_S	1.882	1.00
68_K	72_R	1.873	1.00
360_L	374_K	1.858	1.00
375_V	414_N	1.836	1.00
349_V	356_P	1.810	1.00
281_D	310_L	1.809	1.00
345_E	359_Q	1.805	1.00
315_A	321_M	1.787	1.00
363_N	369_D	1.787	1.00
106_T	109_D	1.784	1.00
347_E	399_R	1.783	1.00
307_L	328_S	1.749	1.00
395_Q	399_R	1.734	1.00
130_D	179_D	1.730	1.00
130_D	209_R	1.720	1.00
284_H	309_R	1.697	1.00
247_G	289_F	1.679	1.00
353_H	381_S	1.677	1.00
28_W	99_K	1.676	1.00
294_K	297_L	1.676	1.00
168_K	171_Q	1.671	1.00
359_Q	373_V	1.654	1.00
334_I	339_V	1.638	1.00
374_K	430_D	1.638	1.00
393_C	412_I	1.635	1.00
183_V	188_C	1.633	1.00
376_E	418_I	1.632	1.00
172_L	176_F	1.624	1.00
133_H	178_P	1.621	1.00
159_I	178_P	1.616	1.00
165_Q	168_K	1.612	1.00
174_R	203_A	1.605	1.00
372_S	411_M	1.600	1.00
84_M	108_N	1.592	1.00
377_L	414_N	1.591	1.00
30_L	35_E	1.585	1.00
85_E	108_N	1.581	1.00
298_P	301_R	1.578	1.00
353_H	391_Q	1.566	1.00
421_S	426_C	1.556	1.00
272_N	279_L	1.553	1.00
310_L	321_M	1.552	1.00
248_V	268_P	1.550	1.00
131_K	159_I	1.545	1.00
388_Q	391_Q	1.543	1.00
280_A	283_E	1.542	1.00
270_I	308_T	1.533	1.00
374_K	415_C	1.523	1.00
240_L	302_Y	1.521	1.00
297_L	301_R	1.515	1.00
389_R	393_C	1.513	1.00
122_R	264_D	1.511	1.00
186_S	216_E	1.509	1.00
188_C	211_G	1.506	1.00
361_E	369_D	1.486	1.00
297_L	300_I	1.485	1.00
64_P	68_K	1.472	1.00
397_R	408_T	1.470	1.00
356_P	376_E	1.452	1.00
390_C	394_H	1.435	1.00
362_V	372_S	1.433	1.00
261_I	315_A	1.429	1.00
342_S	346_E	1.426	1.00
82_V	86_Q	1.424	1.00
308_T	324_I	1.418	1.00
375_V	412_I	1.399	1.00
332_L	341_P	1.389	1.00
294_K	301_R	1.387	1.00
180_M	210_V	1.386	1.00
127_S	130_D	1.382	1.00
262_W	268_P	1.379	1.00
58_S	61_R	1.378	1.00
109_D	244_M	1.377	1.00
364_R	370_S	1.376	1.00
189_L	222_M	1.372	1.00
85_E	106_T	1.368	1.00
389_R	414_N	1.367	1.00
347_E	350_K	1.366	1.00
394_H	398_H	1.353	1.00
370_S	410_V	1.348	1.00
161_M	172_L	1.346	1.00
286_E	328_S	1.337	1.00
250_M	315_A	1.334	1.00
224_K	228_R	1.334	1.00
68_K	71_L	1.327	1.00
250_M	258_G	1.320	1.00
233_T	251_E	1.317	1.00
192_I	225_E	1.316	1.00
397_R	402_S	1.314	1.00
330_D	342_S	1.314	1.00
331_M	340_F	1.311	1.00
337_V	406_I	1.307	1.00
226_I	230_L	1.304	1.00
181_I	208_L	1.301	1.00
90_I	102_V	1.294	1.00
393_C	397_R	1.293	1.00
131_K	179_D	1.286	1.00
142_T	182_M	1.285	1.00
268_P	289_F	1.283	1.00
355_S	376_E	1.281	1.00
213_F	218_W	1.274	1.00
335_R	367_H	1.273	1.00
36_N	61_R	1.268	1.00
296_A	299_V	1.267	1.00
395_Q	398_H	1.249	1.00
105_Y	109_D	1.242	1.00
159_I	176_F	1.239	1.00
294_K	298_P	1.239	1.00
131_K	178_P	1.236	1.00
296_A	300_I	1.233	1.00
61_R	64_P	1.231	1.00
167_E	194_E	1.229	1.00
429_F	433_N	1.225	1.00
370_S	411_M	1.220	1.00
130_D	180_M	1.217	1.00
193_E	225_E	1.206	1.00
225_E	229_R	1.206	1.00
219_T	222_M	1.205	1.00
221_A	225_E	1.199	1.00
190_N	366_G	1.195	1.00
64_P	67_T	1.195	1.00
136_Y	142_T	1.187	1.00
28_W	32_H	1.179	1.00
41_R	44_F	1.174	1.00
279_L	283_E	1.167	1.00
415_C	433_N	1.165	1.00
295_E	298_P	1.163	1.00
294_K	300_I	1.162	1.00
62_K	66_T	1.155	1.00
121_L	154_L	1.142	1.00
391_Q	394_H	1.142	1.00
394_H	397_R	1.117	1.00
415_C	418_I	1.112	1.00
391_Q	395_Q	1.111	1.00
362_V	411_M	1.110	1.00
94_S	422_E	1.109	1.00
295_E	301_R	1.102	1.00
418_I	425_A	1.096	1.00
374_K	431_L	1.091	1.00
345_E	427_R	1.088	1.00
72_R	75_Y	1.087	1.00
401_K	406_I	1.086	1.00
311_L	314_T	1.081	1.00
210_V	235_L	1.079	1.00
259_P	324_I	1.076	1.00
428_V	432_R	1.071	1.00
179_D	209_R	1.070	1.00
87_V	106_T	1.067	1.00
332_L	371_L	1.061	1.00
373_V	412_I	1.060	1.00
173_I	207_S	1.059	1.00
93_S	103_V	1.058	1.00
159_I	172_L	1.055	1.00
189_L	219_T	1.054	1.00
274_H	328_S	1.054	1.00
396_L	408_T	1.046	1.00
225_E	228_R	1.046	1.00
358_Y	418_I	1.044	1.00
62_K	65_C	1.043	1.00
276_G	288_L	1.034	1.00
351_F	392_V	1.034	1.00
377_L	387_E	1.029	1.00
218_W	223_R	1.015	1.00
113_W	245_G	1.005	1.00
133_H	161_M	1.005	1.00
67_T	70_D	1.004	1.00
61_R	65_C	0.995	1.00
289_F	304_T	0.987	1.00
112_N	265_H	0.983	1.00
297_L	303_R	0.981	1.00
330_D	345_E	0.976	1.00
105_Y	244_M	0.975	1.00
188_C	226_I	0.973	1.00
269_E	290_T	0.973	1.00
33_A	92_A	0.970	1.00
389_R	412_I	0.968	1.00
151_A	156_A	0.959	1.00
272_N	283_E	0.959	1.00
270_I	279_L	0.955	1.00
174_R	204_S	0.954	1.00
401_K	407_S	0.951	1.00
189_L	193_E	0.950	1.00
243_V	247_G	0.941	1.00
298_P	303_R	0.941	1.00
287_L	324_I	0.940	1.00
296_A	301_R	0.924	1.00
189_L	225_E	0.923	1.00
347_E	396_L	0.921	1.00
31_K	99_K	0.905	1.00
91_H	241_S	0.904	1.00
88_V	107_Q	0.903	1.00
212_V	237_I	0.903	1.00
351_F	391_Q	0.903	1.00
58_S	62_K	0.902	1.00
131_K	177_Q	0.900	1.00
82_V	107_Q	0.898	1.00
282_G	312_P	0.895	1.00
276_G	303_R	0.894	1.00
57_L	60_L	0.892	1.00
235_L	251_E	0.891	1.00
210_V	233_T	0.891	1.00
141_F	245_G	0.891	1.00
358_Y	430_D	0.891	1.00
334_I	410_V	0.888	1.00
376_E	417_S	0.887	1.00
307_L	326_G	0.875	1.00
248_V	321_M	0.873	1.00
362_V	370_S	0.869	1.00
393_C	408_T	0.866	1.00
342_S	345_E	0.865	1.00
28_W	31_K	0.863	1.00
28_W	92_A	0.863	1.00
346_E	350_K	0.863	1.00
167_E	171_Q	0.862	1.00
184_T	187_Y	0.862	1.00
387_E	391_Q	0.861	1.00
227_E	233_T	0.860	1.00
188_C	213_F	0.860	1.00
411_M	414_N	0.859	1.00
68_K	75_Y	0.858	1.00
173_I	178_P	0.858	1.00
127_S	209_R	0.852	1.00
89_R	105_Y	0.852	1.00
258_G	315_A	0.851	1.00
164_G	187_Y	0.850	1.00
141_F	240_L	0.850	1.00
171_Q	174_R	0.849	1.00
350_K	395_Q	0.844	1.00
358_Y	425_A	0.844	1.00
140_L	337_V	0.841	1.00
271_V	278_P	0.841	1.00
334_I	361_E	0.840	1.00
268_P	287_L	0.840	1.00
60_L	63_F	0.836	1.00
334_I	371_L	0.835	1.00
377_L	381_S	0.833	1.00
182_M	246_P	0.831	1.00
130_D	156_A	0.828	1.00
363_N	366_G	0.827	1.00
390_C	393_C	0.827	1.00
274_H	286_E	0.825	1.00
88_V	110_I	0.822	1.00
250_M	253_L	0.822	1.00
243_V	289_F	0.822	1.00
40_Y	44_F	0.822	1.00
269_E	301_R	0.820	1.00
59_D	62_K	0.818	1.00
189_L	221_A	0.815	1.00
168_K	172_L	0.813	1.00
295_E	300_I	0.813	1.00
119_R	123_A	0.812	1.00
392_V	412_I	0.811	1.00
268_P	321_M	0.811	1.00
77_F	80_F	0.808	1.00
118_A	121_L	0.808	1.00
196_E	225_E	0.802	1.00
315_A	323_R	0.800	1.00
172_L	175_D	0.798	1.00
65_C	68_K	0.798	1.00
363_N	368_L	0.794	1.00
396_L	400_I	0.792	1.00
303_R	328_S	0.792	1.00
389_R	411_M	0.789	1.00
266_F	293_T	0.787	1.00
240_L	243_V	0.786	1.00
281_D	312_P	0.786	1.00
203_A	206_C	0.785	1.00
270_I	321_M	0.783	1.00
360_L	431_L	0.781	1.00
208_L	211_G	0.779	1.00
132_I	180_M	0.779	1.00
295_E	299_V	0.779	1.00
135_A	187_Y	0.777	1.00
133_H	173_I	0.776	1.00
89_R	144_G	0.773	1.00
402_S	408_T	0.773	1.00
69_Q	72_R	0.770	1.00
157_T	176_F	0.768	1.00
133_H	172_L	0.767	1.00
190_N	193_E	0.767	1.00
151_A	158_V	0.767	1.00
222_M	225_E	0.764	1.00
240_L	304_T	0.761	1.00
218_W	234_A	0.755	1.00
268_P	308_T	0.755	1.00
59_D	63_F	0.754	1.00
221_A	224_K	0.753	1.00
126_G	180_M	0.752	1.00
139_G	337_V	0.750	1.00
237_I	246_P	0.749	1.00
142_T	214_G	0.747	1.00
358_Y	427_R	0.744	1.00
66_T	71_L	0.743	1.00
40_Y	45_D	0.742	1.00
173_I	181_I	0.741	1.00
236_D	257_D	0.739	1.00
171_Q	203_A	0.739	1.00
119_R	122_R	0.737	1.00
251_E	254_E	0.734	1.00
278_P	288_L	0.731	1.00
334_I	367_H	0.730	1.00
134_V	158_V	0.729	1.00
145_L	182_M	0.729	1.00
196_E	229_R	0.728	1.00
410_V	414_N	0.728	1.00
86_Q	107_Q	0.727	1.00
174_R	206_C	0.725	1.00
347_E	395_Q	0.724	1.00
346_E	349_V	0.721	1.00
296_A	302_Y	0.721	1.00
89_R	110_I	0.721	1.00
161_M	169_Q	0.721	1.00
387_E	392_V	0.721	1.00
284_H	328_S	0.718	1.00
129_K	179_D	0.718	1.00
68_K	74_N	0.716	1.00
118_A	122_R	0.715	1.00
353_H	377_L	0.713	1.00
393_C	396_L	0.713	1.00
369_D	431_L	0.712	1.00
211_G	232_I	0.711	1.00
113_W	246_P	0.710	1.00
213_F	234_A	0.709	1.00
147_A	151_A	0.707	1.00
90_I	104_G	0.706	1.00
402_S	406_I	0.706	1.00
413_V	433_N	0.705	1.00
227_E	254_E	0.705	1.00
238_Y	247_G	0.704	1.00
419_P	430_D	0.704	1.00
282_G	309_R	0.702	1.00
263_E	266_F	0.702	1.00
290_T	301_R	0.701	1.00
363_N	367_H	0.701	1.00
409_D	412_I	0.700	1.00
341_P	427_R	0.697	1.00
348_I	357_H	0.696	1.00
32_H	99_K	0.695	1.00
60_L	64_P	0.695	1.00
355_S	377_L	0.695	1.00
353_H	395_Q	0.693	1.00
170_A	174_R	0.693	1.00
211_G	226_I	0.691	1.00
174_R	205_G	0.689	1.00
131_K	134_V	0.688	1.00
132_I	151_A	0.688	1.00
59_D	64_P	0.687	1.00
174_R	207_S	0.687	1.00
382_L	388_Q	0.686	1.00
194_E	197_R	0.685	1.00
58_S	64_P	0.685	1.00
134_V	160_P	0.685	1.00
201_G	229_R	0.684	1.00
387_E	390_C	0.681	1.00
355_S	379_E	0.681	1.00
223_R	236_D	0.681	1.00
120_S	123_A	0.680	1.00
107_Q	111_D	0.680	1.00
71_L	74_N	0.679	1.00
113_W	244_M	0.678	1.00
353_H	378_K	0.677	1.00
145_L	245_G	0.676	1.00
182_M	237_I	0.675	1.00
271_V	276_G	0.675	1.00
224_K	227_E	0.672	1.00
278_P	310_L	0.672	1.00
382_L	387_E	0.671	1.00
374_K	413_V	0.668	1.00
161_M	168_K	0.662	1.00
154_L	157_T	0.656	1.00
134_V	143_G	0.656	1.00
196_E	202_D	0.655	1.00
113_W	145_L	0.655	1.00
408_T	412_I	0.653	1.00
243_V	302_Y	0.652	1.00
223_R	227_E	0.652	1.00
133_H	169_Q	0.651	1.00
63_F	66_T	0.650	1.00
332_L	361_E	0.650	1.00
136_Y	182_M	0.649	1.00
170_A	191_L	0.649	1.00
143_G	147_A	0.645	1.00
135_A	184_T	0.644	1.00
146_G	182_M	0.643	1.00
246_P	249_A	0.642	1.00
308_T	325_S	0.638	1.00
46_A	49_V	0.638	1.00
71_L	75_Y	0.635	1.00
364_R	368_L	0.634	1.00
428_V	431_L	0.634	1.00
169_Q	173_I	0.633	1.00
91_H	141_F	0.633	1.00
347_E	400_I	0.633	1.00
70_D	73_D	0.632	1.00
364_R	367_H	0.632	1.00
356_P	418_I	0.632	1.00
123_A	251_E	0.631	1.00
329_D	369_D	0.631	1.00
374_K	433_N	0.630	1.00
164_G	169_Q	0.629	1.00
294_K	299_V	0.629	1.00
224_K	256_T	0.627	1.00
308_T	321_M	0.627	1.00
67_T	72_R	0.624	1.00
348_I	396_L	0.624	1.00
351_F	354_L	0.624	1.00
217_P	324_I	0.622	1.00
181_I	211_G	0.621	1.00
334_I	369_D	0.620	1.00
218_W	236_D	0.619	1.00
267_Y	301_R	0.617	1.00
270_I	285_G	0.615	1.00
272_N	276_G	0.614	1.00
98_G	340_F	0.612	1.00
57_L	63_F	0.612	1.00
226_I	234_A	0.612	1.00
377_L	382_L	0.610	1.00
170_A	195_L	0.607	1.00
166_T	194_E	0.606	1.00
345_E	349_V	0.605	1.00
417_S	420_R	0.603	1.00
379_E	382_L	0.603	1.00
345_E	373_V	0.602	1.00
331_M	338_N	0.600	1.00
362_V	374_K	0.600	1.00
378_K	381_S	0.598	1.00
135_A	183_V	0.598	1.00
114_A	149_Y	0.597	1.00
195_L	229_R	0.595	1.00
134_V	147_A	0.594	1.00
288_L	301_R	0.593	1.00
354_L	375_V	0.591	1.00
179_D	207_S	0.591	1.00
305_R	329_D	0.590	1.00
67_T	71_L	0.590	1.00
334_I	370_S	0.590	1.00
192_I	222_M	0.588	1.00
42_R	45_D	0.587	1.00
270_I	310_L	0.587	1.00
76_P	79_T	0.587	1.00
170_A	205_G	0.582	1.00
354_L	357_H	0.580	1.00
237_I	249_A	0.579	1.00
142_T	212_V	0.579	1.00
283_E	309_R	0.577	1.00
295_E	302_Y	0.576	1.00
271_V	303_R	0.576	1.00
37_V	62_K	0.574	1.00
145_L	246_P	0.572	1.00
162_S	168_K	0.570	1.00
202_D	206_C	0.569	1.00
126_G	130_D	0.568	1.00
365_R	368_L	0.568	1.00
108_N	112_N	0.567	1.00
185_P	216_E	0.565	1.00
259_P	308_T	0.564	1.00
397_R	409_D	0.564	1.00
142_T	237_I	0.564	1.00
213_F	236_D	0.563	1.00
137_G	140_L	0.563	1.00
103_V	241_S	0.562	1.00
330_D	341_P	0.559	1.00
357_H	396_L	0.558	1.00
214_G	237_I	0.558	1.00
375_V	392_V	0.558	1.00
182_M	214_G	0.557	1.00
341_P	359_Q	0.556	1.00
119_R	264_D	0.555	1.00
270_I	287_L	0.555	1.00
204_S	207_S	0.554	1.00
326_G	341_P	0.554	1.00
132_I	156_A	0.553	1.00
258_G	311_L	0.552	1.00
362_V	432_R	0.552	1.00
251_E	261_I	0.551	1.00
167_E	203_A	0.550	1.00
344_L	371_L	0.549	1.00
123_A	264_D	0.549	1.00
375_V	389_R	0.548	1.00
182_M	212_V	0.547	1.00
248_V	259_P	0.546	1.00
69_Q	73_D	0.545	1.00
124_A	212_V	0.544	1.00
158_V	161_M	0.543	1.00
240_L	247_G	0.538	1.00
112_N	292_L	0.538	1.00
296_A	303_R	0.537	1.00
397_R	401_K	0.535	1.00
247_G	266_F	0.535	1.00
63_F	68_K	0.534	1.00
126_G	156_A	0.533	1.00
118_A	153_R	0.533	1.00
114_A	152_E	0.532	1.00
79_T	82_V	0.532	1.00
121_L	153_R	0.532	1.00
94_S	421_S	0.531	1.00
157_T	160_P	0.529	1.00
142_T	246_P	0.528	1.00
78_D	82_V	0.528	1.00
68_K	73_D	0.528	1.00
186_S	190_N	0.526	1.00
214_G	246_P	0.526	1.00
121_L	126_G	0.524	1.00
407_S	414_N	0.522	1.00
326_G	342_S	0.521	1.00
183_V	187_Y	0.519	1.00
250_M	255_T	0.519	1.00
381_S	388_Q	0.518	1.00
220_Q	257_D	0.518	1.00
29_T	102_V	0.517	1.00
288_L	297_L	0.514	1.00
213_F	226_I	0.514	1.00
419_P	433_N	0.514	1.00
108_N	292_L	0.513	1.00
96_T	426_C	0.512	1.00
114_A	153_R	0.511	1.00
66_T	72_R	0.511	1.00
247_G	268_P	0.510	1.00
290_T	300_I	0.509	1.00
31_K	59_D	0.508	1.00
150_G	153_R	0.508	1.00
290_T	299_V	0.508	1.00
177_Q	206_C	0.508	1.00
250_M	254_E	0.507	1.00
164_G	190_N	0.506	1.00
70_D	74_N	0.505	1.00
144_G	148_H	0.505	1.00
190_N	194_E	0.503	1.00
135_A	161_M	0.502	1.00
149_Y	152_E	0.500	1.00
34_Y	59_D	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3tsyA	2	0.7277	100	0.229	Contact Map
3etcA	2	0.9153	100	0.233	Contact Map
3ni2A	1	0.9474	100	0.242	Contact Map
2d1sA	1	0.9565	100	0.243	Contact Map
1mdbA	1	0.9497	100	0.244	Contact Map
3c5eA	1	0.9542	100	0.245	Contact Map
1pg4A	1	0.9611	100	0.246	Contact Map
4lgcA	1	0.6773	100	0.246	Contact Map
2y27A	2	0.9634	100	0.248	Contact Map
3g7sA	2	0.8673	100	0.249	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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