PAAC - ECOLI - GREMLIN Contacts

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PAAC - 1,2-phenylacetyl-CoA epoxidase, subunit C

UniProt:	P76079	Sequences: MNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLDLLGQARNFLSYAAELAGEGDEDTLAFTRDERQFSNLLLVEQPNGNFADTIARQYFIDAWHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVSGQKMQQAINKLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRTGGKKGLHTEHLGPMLAEMQYLQRVLPGQQW	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13737
Length:	248 (227)
Sequences:	1386 (707)
Seq/√Len:	46.9

ECOLI - PAAC PAAA
SULSO - Q97WU6 Q97YL0 Q97YL1 Q97WU5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
156_Q	160_N	4.267	1.00
64_D	67_T	4.157	1.00
12_G	53_L	4.070	1.00
10_R	173_D	3.483	1.00
80_L	169_L	3.088	1.00
179_L	185_A	2.955	1.00
19_S	46_L	2.909	1.00
95_A	155_M	2.895	1.00
34_I	136_F	2.848	1.00
156_Q	209_N	2.830	1.00
99_F	159_I	2.790	1.00
20_Q	23_G	2.757	1.00
152_G	207_T	2.626	1.00
85_Q	165_F	2.618	1.00
17_V	232_M	2.574	1.00
14_N	221_K	2.536	1.00
146_N	207_T	2.493	1.00
152_G	156_Q	2.407	1.00
91_A	158_A	2.352	1.00
86_P	228_H	2.349	1.00
50_R	65_E	2.287	1.00
166_T	195_W	2.174	1.00
141_L	155_M	2.156	1.00
98_Y	141_L	2.136	1.00
52_F	119_L	2.111	1.00
102_A	134_L	2.089	1.00
5_T	59_L	2.060	1.00
200_F	210_V	1.982	0.99
52_F	108_F	1.943	0.99
172_A	187_D	1.898	0.99
55_Y	118_Q	1.886	0.99
85_Q	226_T	1.858	0.99
6_A	78_S	1.850	0.99
145_G	155_M	1.808	0.99
74_E	230_G	1.790	0.99
94_I	141_L	1.732	0.98
53_L	68_L	1.656	0.98
192_R	196_E	1.625	0.97
55_Y	116_D	1.609	0.97
155_M	208_L	1.597	0.97
89_N	154_K	1.595	0.97
108_F	130_A	1.590	0.97
95_A	159_I	1.561	0.97
153_Q	157_Q	1.555	0.97
163_W	211_P	1.529	0.96
108_F	136_F	1.525	0.96
74_E	229_L	1.492	0.96
177_I	181_E	1.472	0.95
67_T	71_T	1.403	0.94
150_V	153_Q	1.403	0.94
8_T	59_L	1.402	0.94
101_D	104_H	1.402	0.94
106_A	198_E	1.401	0.94
127_I	131_R	1.396	0.94
92_D	161_K	1.389	0.94
99_F	162_L	1.381	0.93
21_R	24_E	1.381	0.93
39_A	46_L	1.375	0.93
29_A	90_F	1.368	0.93
98_Y	202_G	1.363	0.93
98_Y	199_V	1.326	0.92
200_F	204_N	1.325	0.92
172_A	189_R	1.321	0.92
187_D	190_T	1.310	0.92
174_E	177_I	1.296	0.91
57_A	64_D	1.284	0.91
229_L	233_L	1.280	0.91
196_E	200_F	1.278	0.91
98_Y	137_S	1.276	0.90
89_N	92_D	1.250	0.90
225_H	229_L	1.245	0.89
105_V	127_I	1.234	0.89
220_G	225_H	1.227	0.89
95_A	158_A	1.226	0.89
110_R	194_A	1.226	0.89
156_Q	203_I	1.219	0.88
201_A	205_E	1.195	0.87
83_V	100_I	1.191	0.87
14_N	80_L	1.185	0.87
145_G	152_G	1.182	0.87
85_Q	228_H	1.167	0.86
104_H	130_A	1.164	0.86
117_P	121_A	1.144	0.85
73_D	76_Q	1.144	0.85
156_Q	207_T	1.141	0.85
18_L	96_R	1.110	0.83
181_E	184_I	1.104	0.83
145_G	156_Q	1.096	0.82
218_T	224_L	1.096	0.82
177_I	187_D	1.094	0.82
141_L	202_G	1.089	0.82
147_G	151_S	1.078	0.81
94_I	140_W	1.075	0.81
167_A	192_R	1.072	0.81
104_H	108_F	1.070	0.81
145_G	206_A	1.067	0.80
52_F	104_H	1.063	0.80
51_N	122_I	1.062	0.80
45_L	130_A	1.061	0.80
102_A	106_A	1.055	0.80
192_R	195_W	1.053	0.80
138_R	202_G	1.052	0.80
79_N	84_E	1.032	0.78
10_R	175_I	1.024	0.78
80_L	100_I	1.023	0.78
95_A	141_L	1.021	0.77
138_R	198_E	1.010	0.77
101_D	108_F	0.999	0.76
193_A	196_E	0.998	0.76
148_T	163_W	0.983	0.75
171_D	218_T	0.980	0.74
170_F	192_R	0.972	0.74
101_D	137_S	0.962	0.73
159_I	203_I	0.960	0.73
140_W	143_R	0.952	0.72
135_R	139_G	0.946	0.72
58_E	118_Q	0.945	0.72
45_L	101_D	0.938	0.71
55_Y	58_E	0.937	0.71
34_I	150_V	0.934	0.71
155_M	207_T	0.933	0.71
157_Q	160_N	0.929	0.70
4_L	179_L	0.929	0.70
15_C	130_A	0.919	0.70
150_V	154_K	0.915	0.69
195_W	199_V	0.913	0.69
103_W	107_L	0.912	0.69
227_E	230_G	0.912	0.69
82_L	100_I	0.911	0.69
54_S	57_A	0.907	0.69
138_R	142_E	0.904	0.68
189_R	193_A	0.894	0.67
105_V	109_T	0.893	0.67
45_L	104_H	0.888	0.67
208_L	211_P	0.880	0.66
157_Q	161_K	0.876	0.66
101_D	136_F	0.874	0.66
93_T	97_Q	0.869	0.65
18_L	97_Q	0.866	0.65
176_D	179_L	0.864	0.65
220_G	223_G	0.861	0.65
109_T	112_M	0.857	0.64
102_A	198_E	0.853	0.64
90_F	144_L	0.852	0.64
110_R	190_T	0.851	0.64
106_A	194_A	0.841	0.63
167_A	215_A	0.839	0.63
85_Q	92_D	0.835	0.62
105_V	131_R	0.832	0.62
21_R	33_E	0.827	0.61
8_T	56_A	0.826	0.61
145_G	208_L	0.826	0.61
8_T	12_G	0.822	0.61
54_S	65_E	0.813	0.60
134_L	198_E	0.812	0.60
35_D	39_A	0.809	0.60
189_R	192_R	0.809	0.60
54_S	159_I	0.808	0.60
167_A	217_R	0.801	0.59
105_V	134_L	0.797	0.59
118_Q	121_A	0.797	0.59
52_F	136_F	0.781	0.57
41_I	136_F	0.776	0.56
27_G	35_D	0.776	0.56
159_I	208_L	0.773	0.56
172_A	177_I	0.772	0.56
57_A	65_E	0.771	0.56
172_A	190_T	0.771	0.56
85_Q	161_K	0.770	0.56
47_G	129_E	0.766	0.56
109_T	197_A	0.764	0.55
42_G	46_L	0.762	0.55
160_N	209_N	0.754	0.54
8_T	118_Q	0.748	0.54
23_G	39_A	0.743	0.53
210_V	213_E	0.741	0.53
179_L	184_I	0.741	0.53
170_F	191_L	0.740	0.53
50_R	121_A	0.739	0.53
67_T	74_E	0.736	0.53
75_R	224_L	0.736	0.53
23_G	42_G	0.736	0.53
89_N	158_A	0.735	0.52
44_D	101_D	0.732	0.52
4_L	8_T	0.729	0.52
97_Q	101_D	0.722	0.51
136_F	140_W	0.721	0.51
159_I	201_A	0.719	0.51
89_N	150_V	0.719	0.51
172_A	188_P	0.717	0.51
104_H	136_F	0.716	0.51
113_E	181_E	0.714	0.50
17_V	86_P	0.714	0.50
99_F	166_T	0.714	0.50
33_E	66_D	0.713	0.50
178_A	193_A	0.712	0.50
4_L	187_D	0.712	0.50
181_E	212_Q	0.711	0.50
149_D	153_Q	0.708	0.50
215_A	219_G	0.704	0.49
90_F	116_D	0.700	0.49
25_W	88_G	0.696	0.49
81_L	219_G	0.693	0.48
93_T	122_I	0.690	0.48
45_L	48_Q	0.690	0.48
76_Q	212_Q	0.689	0.48
203_I	210_V	0.686	0.48
125_K	132_Y	0.683	0.47
113_E	204_N	0.678	0.47
136_F	139_G	0.678	0.47
40_N	43_L	0.677	0.47
10_R	176_D	0.677	0.47
13_D	72_R	0.677	0.47
48_Q	116_D	0.676	0.47
52_F	101_D	0.676	0.47
220_G	229_L	0.675	0.47
106_A	191_L	0.675	0.47
69_A	72_R	0.674	0.46
80_L	83_V	0.671	0.46
8_T	55_Y	0.670	0.46
171_D	222_K	0.669	0.46
6_A	175_I	0.669	0.46
227_E	231_P	0.669	0.46
43_L	47_G	0.666	0.46
29_A	39_A	0.665	0.46
4_L	59_L	0.664	0.45
173_D	176_D	0.660	0.45
78_S	199_V	0.658	0.45
103_W	131_R	0.658	0.45
16_L	77_F	0.656	0.45
13_D	21_R	0.656	0.45
196_E	210_V	0.655	0.45
44_D	158_A	0.655	0.45
29_A	36_L	0.654	0.44
14_N	104_H	0.653	0.44
32_L	149_D	0.644	0.43
143_R	146_N	0.641	0.43
142_E	205_E	0.636	0.43
160_N	203_I	0.635	0.43
116_D	126_A	0.633	0.42
105_V	198_E	0.632	0.42
22_L	42_G	0.631	0.42
142_E	206_A	0.628	0.42
115_R	191_L	0.627	0.42
134_L	138_R	0.626	0.42
219_G	223_G	0.624	0.42
136_F	195_W	0.624	0.42
186_V	194_A	0.622	0.41
152_G	208_L	0.620	0.41
99_F	199_V	0.620	0.41
34_I	158_A	0.620	0.41
53_L	163_W	0.617	0.41
153_Q	214_Q	0.615	0.41
15_C	45_L	0.612	0.40
188_P	193_A	0.612	0.40
37_A	144_L	0.611	0.40
193_A	212_Q	0.609	0.40
50_R	54_S	0.606	0.40
221_K	231_P	0.605	0.40
175_I	178_A	0.604	0.40
44_D	132_Y	0.597	0.39
79_N	229_L	0.595	0.39
15_C	104_H	0.594	0.39
15_C	48_Q	0.588	0.38
213_E	232_M	0.586	0.38
97_Q	137_S	0.585	0.38
84_E	226_T	0.584	0.38
31_E	90_F	0.583	0.38
23_G	93_T	0.581	0.37
22_L	90_F	0.580	0.37
217_R	222_K	0.580	0.37
163_W	210_V	0.579	0.37
217_R	224_L	0.576	0.37
144_L	155_M	0.576	0.37
87_N	93_T	0.575	0.37
41_I	119_L	0.575	0.37
11_L	41_I	0.573	0.37
14_N	89_N	0.572	0.37
107_L	130_A	0.570	0.36
17_V	20_Q	0.570	0.36
217_R	220_G	0.570	0.36
120_A	191_L	0.569	0.36
26_C	42_G	0.568	0.36
175_I	185_A	0.565	0.36
153_Q	197_A	0.564	0.36
31_E	136_F	0.561	0.36
75_R	212_Q	0.559	0.35
69_A	123_S	0.558	0.35
149_D	178_A	0.554	0.35
197_A	200_F	0.553	0.35
203_I	207_T	0.553	0.35
19_S	103_W	0.553	0.35
146_N	152_G	0.553	0.35
125_K	158_A	0.550	0.35
14_N	179_L	0.548	0.34
178_A	181_E	0.547	0.34
180_S	191_L	0.547	0.34
4_L	48_Q	0.547	0.34
193_A	233_L	0.546	0.34
122_I	126_A	0.545	0.34
216_Y	221_K	0.545	0.34
79_N	225_H	0.544	0.34
109_T	194_A	0.543	0.34
48_Q	130_A	0.542	0.34
19_S	100_I	0.541	0.34
201_A	232_M	0.540	0.34
190_T	193_A	0.540	0.34
47_G	132_Y	0.539	0.34
224_L	231_P	0.538	0.34
101_D	184_I	0.537	0.33
82_L	203_I	0.537	0.33
47_G	125_K	0.537	0.33
5_T	8_T	0.536	0.33
64_D	70_F	0.536	0.33
91_A	144_L	0.534	0.33
167_A	171_D	0.533	0.33
59_L	71_T	0.532	0.33
80_L	221_K	0.531	0.33
168_E	223_G	0.531	0.33
114_S	183_G	0.530	0.33
153_Q	200_F	0.526	0.32
191_L	194_A	0.526	0.32
180_S	187_D	0.525	0.32
107_L	191_L	0.523	0.32
210_V	214_Q	0.522	0.32
182_E	185_A	0.521	0.32
174_E	204_N	0.521	0.32
22_L	46_L	0.520	0.32
31_E	34_I	0.520	0.32
87_N	92_D	0.519	0.32
17_V	117_P	0.512	0.31
92_D	158_A	0.512	0.31
29_A	45_L	0.512	0.31
109_T	190_T	0.511	0.31
193_A	200_F	0.508	0.31
18_L	100_I	0.504	0.31
157_Q	209_N	0.504	0.31
74_E	227_E	0.503	0.31
59_L	182_E	0.503	0.31
109_T	196_E	0.500	0.30

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1otkA	2	0.9798	100	0.052	Contact Map
3pf7A	1	0.9798	100	0.246	Contact Map
3pvtA	1	0.9879	100	0.32	Contact Map
4mudA	2	0.8226	100	0.406	Contact Map
3ge3A	2	0.9637	98.3	0.878	Contact Map
2incA	2	0.9677	98.3	0.881	Contact Map
1mtyD	2	0.9798	98.2	0.881	Contact Map
3u52A	2	0.9677	98	0.89	Contact Map
1mtyB	2	0.8669	97.6	0.897	Contact Map
3u52C	2	0.8145	97.5	0.9	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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