GREMLIN Database
YDBL - Uncharacterized protein YdbL
UniProt: P76076 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13733
Length: 108 (102)
Sequences: 370 (270)
Seq/√Len: 26.7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
36_T42_V4.0471.00
64_S67_Q3.3941.00
33_V54_V3.3691.00
87_L91_A2.7130.99
38_Y98_Q2.5420.99
40_Y80_A2.2970.98
37_F98_Q2.2750.98
38_Y42_V2.1990.98
40_Y62_K2.1610.97
7_L20_M2.1370.97
23_T26_E2.0820.97
85_Q89_A2.0680.97
76_V80_A1.9020.94
56_D60_E1.8760.94
75_S78_D1.7930.92
12_V15_V1.7750.92
47_D50_T1.7350.91
83_A87_L1.6940.90
91_A95_E1.6200.88
43_A50_T1.5670.86
11_L14_L1.5520.86
72_N86_K1.5190.84
92_K95_E1.5060.84
50_T54_V1.5060.84
68_L86_K1.4200.80
8_C106_R1.4130.80
66_Q70_K1.3960.79
68_L79_I1.3740.78
47_D51_E1.3550.77
74_V79_I1.3260.75
55_A59_A1.3240.75
36_T98_Q1.3190.75
51_E55_A1.2750.72
28_R44_L1.2640.72
44_L96_Y1.2350.70
30_Q89_A1.2340.70
79_I82_L1.2230.69
7_L10_F1.2130.68
32_R47_D1.2010.68
71_Q106_R1.1850.66
57_I60_E1.1670.65
84_G88_V1.0990.60
88_V97_V1.0840.59
80_A84_G1.0790.59
22_L86_K1.0590.58
77_D80_A1.0530.57
43_A54_V1.0320.56
70_K92_K1.0250.55
22_L84_G1.0110.54
91_A97_V1.0100.54
79_I86_K0.9910.53
98_Q103_K0.9750.51
52_K57_I0.9710.51
72_N82_L0.9510.50
28_R95_E0.9430.49
87_L96_Y0.9400.49
28_R68_L0.9320.48
91_A99_G0.9290.48
24_L41_L0.9030.46
13_G89_A0.8910.45
74_V82_L0.8800.44
11_L93_P0.8680.43
75_S93_P0.8410.41
25_D56_D0.8410.41
34_G104_W0.8400.41
25_D103_K0.8370.41
68_L72_N0.8340.41
60_E64_S0.8320.41
72_N83_A0.8130.39
83_A86_K0.8060.39
20_M41_L0.8000.38
72_N87_L0.7980.38
54_V76_V0.7930.38
73_N99_G0.7840.37
84_G97_V0.7790.37
64_S73_N0.7720.36
80_A95_E0.7690.36
37_F84_G0.7600.36
11_L52_K0.7580.36
10_F20_M0.7570.35
9_A55_A0.7540.35
40_Y91_A0.7490.35
12_V17_S0.7490.35
75_S82_L0.7490.35
22_L32_R0.7490.35
57_I90_R0.7400.34
27_A84_G0.7310.34
14_L81_K0.7250.33
60_E75_S0.7220.33
53_L56_D0.7210.33
22_L30_Q0.7190.33
31_G96_Y0.7150.33
80_A89_A0.7110.32
54_V95_E0.7000.32
82_L86_K0.6870.31
37_F43_A0.6820.30
12_V63_A0.6760.30
24_L59_A0.6700.30
15_V18_N0.6670.30
81_K103_K0.6640.29
29_T70_K0.6570.29
27_A72_N0.6560.29
27_A83_A0.6480.28
52_K55_A0.6460.28
59_A107_K0.6430.28
43_A106_R0.6410.28
19_V45_K0.6380.28
17_S97_V0.6360.28
8_C93_P0.6360.28
21_A29_T0.6320.27
80_A90_R0.6240.27
8_C12_V0.6200.27
53_L82_L0.6050.26
40_Y66_Q0.6050.26
48_A92_K0.6010.26
54_V73_N0.5990.25
75_S106_R0.5990.25
62_K97_V0.5990.25
26_E30_Q0.5980.25
11_L15_V0.5950.25
67_Q71_Q0.5930.25
9_A59_A0.5910.25
24_L27_A0.5880.25
23_T70_K0.5870.25
24_L57_I0.5810.24
13_G52_K0.5810.24
36_T100_I0.5770.24
56_D78_D0.5710.24
59_A63_A0.5690.24
64_S68_L0.5620.23
62_K92_K0.5610.23
14_L98_Q0.5550.23
49_E52_K0.5530.23
59_A73_N0.5530.23
51_E75_S0.5490.23
48_A51_E0.5450.23
84_G87_L0.5420.22
13_G71_Q0.5420.22
42_V80_A0.5370.22
47_D62_K0.5330.22
41_L57_I0.5320.22
36_T87_L0.5280.22
6_L11_L0.5270.22
52_K60_E0.5250.21
20_M23_T0.5180.21
18_N74_V0.5130.21
44_L106_R0.5090.21
29_T103_K0.5060.21
96_Y107_K0.5030.20
78_D82_L0.5030.20
6_L52_K0.5030.20
43_A51_E0.5020.20
85_Q107_K0.5000.20
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1dbgA 1 0.3056 77.8 0.891 Contact Map
3oa8B 3 0.7315 46.7 0.911 Contact Map
3nb3A 2 0.3704 46.7 0.911 Contact Map
3nt8A 1 0.6667 42.5 0.913 Contact Map
4xrvA 1 0.5648 32 0.919 Contact Map
4utoA 1 0.6111 30 0.92 Contact Map
3waeA 2 0.537 26.2 0.922 Contact Map
2nocA 1 0.8056 25.2 0.923 Contact Map
4b8vA 2 0.5556 23.8 0.924 Contact Map
2lmcA 1 0.4815 17.7 0.928 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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