YCJN - ECOLI - GREMLIN Contacts

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YCJN - Putative ABC transporter periplasmic-binding protein YcjN

UniProt:	P76042	Sequences: MIKSKIVLLSALVSCALISGCKEENKTNVSIEFMHSSVEQERQAVISKLIARFEKENPGITVKQVPVEEDAYNTKVITLSRSGSLPEVIETSHDYAKVMDKEQLIDRKAVATVISNVGEGAFYDGVLRIVRTEDGSAWTGVPVSAWIGGIWYRKDVLAKAGLEEPKNWQQLLDVAQKLNDPANKKYGIALPTAESVLTEQSFSQFALSNQANVFNAEGKITLDTPEMMQALTYYRDLTANTMPGSNDIMEVKDAFMNGTAPMAIYSTYILPAVIKEGDPKNVGFVVPTEKNSAVYGMLTSLTITAGQKTEETEAAEKFVTFMEQADNIADWVMMSPGAALPVNKAVVTTATWKDNDVIKALGELPNQLIGELPNIQVFGAVGDKNFTRMGDVTGSGVVSSMVHNVTVGKADLSTTLQASQKKLDELIEQH	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13911
Length:	430 (392)
Sequences:	30321 (24524)
Seq/√Len:	1238.6

ECOLI - YCJN UGPB MALE YDCS POTF YNJB POTD THIB
BACSU - YURO YESO ARAN CYCB MSME YTCQ MDXE LIPO
HALSA - Q9HHQ8 Q9HP00 Q9HR04 Q9HMT5 Q9HNZ3 Q9HR87
SULSO - Q97YY1 Q97ZC3 Q97UZ1 Q97VC2 Q97UF5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
30_S	63_K	3.729	1.00
411_D	414_T	3.159	1.00
32_E	63_K	3.142	1.00
154_K	283_G	3.123	1.00
172_L	236_D	3.075	1.00
228_M	413_S	3.025	1.00
30_S	61_T	2.963	1.00
155_D	281_N	2.890	1.00
235_R	239_A	2.730	1.00
109_A	136_S	2.706	1.00
236_D	240_N	2.628	1.00
167_N	170_Q	2.539	1.00
154_K	158_A	2.429	1.00
225_P	229_Q	2.415	1.00
176_Q	240_N	2.406	1.00
60_I	314_A	2.322	1.00
54_E	61_T	2.300	1.00
71_A	74_T	2.279	1.00
232_T	236_D	2.227	1.00
420_Q	424_D	2.203	1.00
47_S	51_A	2.201	1.00
232_T	412_L	2.193	1.00
173_D	177_K	2.192	1.00
32_E	65_V	2.192	1.00
404_N	409_K	2.181	1.00
111_A	136_S	2.141	1.00
52_R	321_F	2.134	1.00
52_R	55_K	2.130	1.00
152_Y	283_G	2.128	1.00
162_L	174_V	2.125	1.00
413_S	417_Q	2.122	1.00
324_Q	327_N	2.121	1.00
410_A	418_A	2.120	1.00
417_Q	421_K	2.118	1.00
404_N	410_A	2.091	1.00
48_K	51_A	2.025	1.00
317_K	320_T	1.953	1.00
309_T	312_T	1.884	1.00
170_Q	173_D	1.882	1.00
155_D	159_K	1.876	1.00
229_Q	232_T	1.875	1.00
157_L	262_M	1.870	1.00
311_E	314_A	1.869	1.00
43_Q	47_S	1.866	1.00
52_R	330_D	1.855	1.00
329_A	333_M	1.848	1.00
28_N	61_T	1.848	1.00
29_V	314_A	1.847	1.00
53_F	317_K	1.828	1.00
228_M	232_T	1.811	1.00
397_V	422_K	1.809	1.00
173_D	176_Q	1.775	1.00
52_R	56_E	1.775	1.00
51_A	55_K	1.774	1.00
124_D	128_R	1.770	1.00
87_E	311_E	1.741	1.00
247_D	250_E	1.738	1.00
418_A	422_K	1.733	1.00
176_Q	180_D	1.731	1.00
113_V	316_E	1.727	1.00
172_L	176_Q	1.713	1.00
50_I	54_E	1.685	1.00
396_G	400_S	1.677	1.00
313_E	317_K	1.665	1.00
169_Q	172_L	1.660	1.00
414_T	418_A	1.636	1.00
121_A	345_A	1.631	1.00
223_D	417_Q	1.622	1.00
405_V	415_T	1.618	1.00
330_D	334_M	1.616	1.00
156_V	261_P	1.616	1.00
105_I	304_T	1.602	1.00
140_G	302_T	1.593	1.00
130_V	302_T	1.593	1.00
232_T	413_S	1.591	1.00
54_E	58_P	1.584	1.00
50_I	318_F	1.573	1.00
48_K	52_R	1.563	1.00
325_A	329_A	1.557	1.00
401_M	418_A	1.555	1.00
34_M	79_L	1.546	1.00
132_T	138_W	1.542	1.00
417_Q	420_Q	1.539	1.00
254_A	259_T	1.538	1.00
327_N	330_D	1.532	1.00
401_M	404_N	1.529	1.00
128_R	132_T	1.528	1.00
233_Y	236_D	1.524	1.00
172_L	240_N	1.520	1.00
13_V	16_A	1.518	1.00
14_S	17_L	1.512	1.00
414_T	417_Q	1.506	1.00
235_R	405_V	1.504	1.00
75_K	79_L	1.499	1.00
172_L	237_L	1.490	1.00
89_I	306_G	1.485	1.00
29_V	311_E	1.484	1.00
401_M	410_A	1.483	1.00
152_Y	285_V	1.468	1.00
169_Q	173_D	1.455	1.00
418_A	421_K	1.455	1.00
362_G	366_N	1.447	1.00
215_N	219_K	1.445	1.00
189_A	260_A	1.443	1.00
51_A	54_E	1.440	1.00
68_E	71_A	1.437	1.00
178_L	261_P	1.433	1.00
35_H	64_Q	1.429	1.00
226_E	229_Q	1.419	1.00
150_I	285_V	1.411	1.00
172_L	233_Y	1.406	1.00
228_M	412_L	1.403	1.00
314_A	317_K	1.399	1.00
154_K	281_N	1.397	1.00
253_D	257_N	1.389	1.00
223_D	420_Q	1.372	1.00
410_A	415_T	1.362	1.00
363_E	367_Q	1.353	1.00
330_D	333_M	1.350	1.00
305_A	319_V	1.348	1.00
156_V	178_L	1.345	1.00
109_A	112_T	1.336	1.00
162_L	177_K	1.331	1.00
91_T	304_T	1.316	1.00
53_F	321_F	1.312	1.00
405_V	412_L	1.312	1.00
363_E	366_N	1.305	1.00
233_Y	237_L	1.287	1.00
80_S	85_L	1.287	1.00
158_A	164_E	1.285	1.00
11_A	15_C	1.275	1.00
50_I	64_Q	1.275	1.00
174_V	177_K	1.269	1.00
255_F	282_V	1.266	1.00
225_P	228_M	1.253	1.00
100_D	139_T	1.244	1.00
316_E	320_T	1.238	1.00
44_A	47_S	1.237	1.00
53_F	318_F	1.234	1.00
359_K	363_E	1.232	1.00
88_V	315_A	1.231	1.00
236_D	239_A	1.231	1.00
28_N	59_G	1.226	1.00
229_Q	233_Y	1.221	1.00
410_A	414_T	1.220	1.00
343_N	346_V	1.204	1.00
232_T	235_R	1.200	1.00
53_F	60_I	1.200	1.00
401_M	419_S	1.199	1.00
165_P	170_Q	1.191	1.00
212_N	215_N	1.189	1.00
397_V	400_S	1.188	1.00
157_L	174_V	1.177	1.00
166_K	170_Q	1.174	1.00
175_A	262_M	1.173	1.00
56_E	324_Q	1.173	1.00
153_R	156_V	1.172	1.00
325_A	345_A	1.165	1.00
404_N	418_A	1.163	1.00
160_A	178_L	1.162	1.00
309_T	315_A	1.160	1.00
250_E	253_D	1.160	1.00
421_K	424_D	1.158	1.00
150_I	262_M	1.153	1.00
44_A	48_K	1.148	1.00
272_A	275_K	1.137	1.00
400_S	422_K	1.123	1.00
75_K	78_T	1.118	1.00
149_G	284_F	1.115	1.00
209_N	229_Q	1.109	1.00
254_A	260_A	1.108	1.00
153_R	280_K	1.107	1.00
174_V	262_M	1.107	1.00
60_I	317_K	1.095	1.00
87_E	309_T	1.093	1.00
345_A	348_T	1.089	1.00
312_T	316_E	1.088	1.00
155_D	280_K	1.081	1.00
326_D	329_A	1.080	1.00
111_A	115_S	1.077	1.00
176_Q	242_M	1.075	1.00
45_V	48_K	1.070	1.00
235_R	412_L	1.068	1.00
169_Q	290_K	1.068	1.00
157_L	162_L	1.067	1.00
156_V	185_K	1.066	1.00
321_F	327_N	1.063	1.00
228_M	416_L	1.058	1.00
401_M	422_K	1.057	1.00
83_G	308_K	1.047	1.00
49_L	52_R	1.044	1.00
180_D	183_N	1.041	1.00
265_Y	269_I	1.039	1.00
85_L	306_G	1.037	1.00
171_L	175_A	1.037	1.00
33_F	303_I	1.034	1.00
29_V	59_G	1.032	1.00
185_K	259_T	1.026	1.00
171_L	262_M	1.023	1.00
356_D	359_K	1.023	1.00
14_S	18_I	1.020	1.00
318_F	322_M	1.020	1.00
21_C	24_E	1.019	1.00
151_W	265_Y	1.014	1.00
18_I	21_C	1.013	1.00
396_G	399_S	1.011	1.00
115_S	119_E	1.009	1.00
48_K	334_M	1.008	1.00
366_N	370_G	1.007	1.00
48_K	330_D	1.001	1.00
88_V	319_V	0.996	1.00
155_D	158_A	0.995	1.00
21_C	25_N	0.994	1.00
156_V	159_K	0.993	1.00
400_S	404_N	0.992	1.00
156_V	160_A	0.987	1.00
397_V	401_M	0.986	1.00
123_Y	344_K	0.984	1.00
183_N	186_Y	0.984	1.00
73_N	95_Y	0.980	1.00
177_K	180_D	0.974	1.00
100_D	133_E	0.969	1.00
112_T	115_S	0.957	1.00
313_E	316_E	0.948	1.00
315_A	319_V	0.947	1.00
76_V	89_I	0.947	1.00
158_A	163_E	0.946	1.00
10_S	14_S	0.945	1.00
367_Q	370_G	0.939	1.00
206_A	227_M	0.939	1.00
119_E	127_L	0.938	1.00
53_F	314_A	0.937	1.00
391_D	396_G	0.937	1.00
50_I	62_V	0.928	1.00
15_C	18_I	0.927	1.00
31_I	318_F	0.927	1.00
117_V	120_G	0.924	1.00
220_I	424_D	0.921	1.00
124_D	127_L	0.921	1.00
125_G	128_R	0.920	1.00
305_A	315_A	0.916	1.00
305_A	309_T	0.911	1.00
171_L	188_I	0.911	1.00
416_L	420_Q	0.909	1.00
89_I	304_T	0.909	1.00
401_M	415_T	0.908	1.00
318_F	321_F	0.906	1.00
88_V	318_F	0.906	1.00
359_K	362_G	0.905	1.00
360_A	363_E	0.905	1.00
121_A	343_N	0.901	1.00
306_G	309_T	0.900	1.00
10_S	13_V	0.897	1.00
240_N	243_P	0.897	1.00
34_M	67_V	0.890	1.00
127_L	138_W	0.890	1.00
10_S	16_A	0.888	1.00
67_V	75_K	0.888	1.00
392_V	423_L	0.885	1.00
52_R	326_D	0.884	1.00
231_L	405_V	0.883	1.00
179_N	187_G	0.883	1.00
143_V	303_I	0.883	1.00
17_L	20_G	0.876	1.00
153_R	281_N	0.876	1.00
117_V	320_T	0.874	1.00
364_L	367_Q	0.871	1.00
326_D	330_D	0.871	1.00
13_V	17_L	0.871	1.00
221_T	224_T	0.870	1.00
344_K	348_T	0.869	1.00
78_T	82_S	0.866	1.00
62_V	318_F	0.865	1.00
80_S	104_L	0.863	1.00
113_V	313_E	0.859	1.00
253_D	256_M	0.859	1.00
220_I	420_Q	0.855	1.00
307_Q	312_T	0.852	1.00
222_L	227_M	0.846	1.00
122_F	323_E	0.845	1.00
59_G	317_K	0.842	1.00
158_A	281_N	0.841	1.00
31_I	314_A	0.840	1.00
241_T	245_S	0.840	1.00
305_A	316_E	0.840	1.00
79_L	84_S	0.839	1.00
329_A	346_V	0.838	1.00
52_R	327_N	0.834	1.00
97_K	101_K	0.833	1.00
49_L	327_N	0.824	1.00
395_S	399_S	0.823	1.00
29_V	60_I	0.822	1.00
388_R	391_D	0.821	1.00
271_P	275_K	0.820	1.00
411_D	415_T	0.819	1.00
56_E	321_F	0.818	1.00
132_T	135_G	0.818	1.00
235_R	238_T	0.811	1.00
130_V	138_W	0.808	1.00
179_N	242_M	0.807	1.00
123_Y	126_V	0.807	1.00
160_A	177_K	0.806	1.00
308_K	311_E	0.806	1.00
152_Y	164_E	0.806	1.00
231_L	416_L	0.805	1.00
9_L	12_L	0.801	1.00
159_K	185_K	0.794	1.00
175_A	187_G	0.791	1.00
174_V	178_L	0.790	1.00
415_T	419_S	0.790	1.00
249_M	252_K	0.787	1.00
372_L	375_I	0.787	1.00
103_Q	307_Q	0.785	1.00
224_T	227_M	0.784	1.00
162_L	178_L	0.783	1.00
163_E	166_K	0.781	1.00
12_L	15_C	0.781	1.00
31_I	311_E	0.781	1.00
98_V	102_E	0.777	1.00
175_A	242_M	0.776	1.00
172_L	242_M	0.773	1.00
416_L	419_S	0.773	1.00
21_C	26_K	0.770	1.00
400_S	403_H	0.770	1.00
140_G	304_T	0.763	1.00
9_L	15_C	0.763	1.00
209_N	233_Y	0.761	1.00
239_A	408_G	0.760	1.00
9_L	16_A	0.758	1.00
397_V	419_S	0.756	1.00
206_A	211_A	0.752	1.00
99_M	105_I	0.749	1.00
329_A	349_T	0.749	1.00
9_L	13_V	0.749	1.00
54_E	62_V	0.749	1.00
364_L	368_L	0.747	1.00
77_I	98_V	0.746	1.00
74_T	78_T	0.746	1.00
224_T	228_M	0.745	1.00
12_L	16_A	0.740	1.00
11_A	17_L	0.738	1.00
234_Y	238_T	0.737	1.00
168_W	172_L	0.736	1.00
361_L	364_L	0.735	1.00
34_M	86_P	0.735	1.00
17_L	21_C	0.733	1.00
415_T	418_A	0.732	1.00
205_F	209_N	0.732	1.00
56_E	326_D	0.729	1.00
370_G	373_P	0.728	1.00
243_P	246_N	0.728	1.00
20_G	23_E	0.727	1.00
112_T	136_S	0.727	1.00
166_K	288_T	0.726	1.00
231_L	415_T	0.723	1.00
100_D	105_I	0.723	1.00
360_A	364_L	0.721	1.00
403_H	407_V	0.721	1.00
190_L	193_A	0.720	1.00
357_V	360_A	0.717	1.00
176_Q	179_N	0.717	1.00
212_N	216_A	0.716	1.00
136_S	139_T	0.715	1.00
309_T	313_E	0.715	1.00
175_A	179_N	0.714	1.00
172_L	175_A	0.713	1.00
215_N	221_T	0.710	1.00
368_L	371_E	0.706	1.00
24_E	27_T	0.705	1.00
65_V	79_L	0.705	1.00
295_Y	298_L	0.705	1.00
109_A	139_T	0.704	1.00
178_L	183_N	0.704	1.00
270_L	274_I	0.702	1.00
111_A	138_W	0.697	1.00
15_C	19_S	0.696	1.00
157_L	178_L	0.694	1.00
105_I	139_T	0.694	1.00
204_Q	207_L	0.692	1.00
34_M	65_V	0.689	1.00
152_Y	157_L	0.687	1.00
249_M	253_D	0.683	1.00
362_G	365_P	0.683	1.00
28_N	58_P	0.683	1.00
33_F	88_V	0.683	1.00
398_V	419_S	0.683	1.00
6_I	17_L	0.682	1.00
72_Y	76_V	0.678	1.00
116_N	119_E	0.676	1.00
168_W	233_Y	0.675	1.00
118_G	121_A	0.670	1.00
356_D	360_A	0.670	1.00
114_I	138_W	0.669	1.00
371_E	374_N	0.668	1.00
89_I	105_I	0.667	1.00
229_Q	289_E	0.667	1.00
317_K	321_F	0.663	1.00
151_W	284_F	0.661	1.00
122_F	127_L	0.660	1.00
202_F	206_A	0.659	1.00
207_L	212_N	0.658	1.00
369_I	372_L	0.657	1.00
176_Q	236_D	0.655	1.00
10_S	17_L	0.655	1.00
160_A	185_K	0.655	1.00
95_Y	98_V	0.654	1.00
155_D	258_G	0.654	1.00
41_E	44_A	0.653	1.00
6_I	10_S	0.651	1.00
320_T	324_Q	0.650	1.00
49_L	330_D	0.649	1.00
250_E	254_A	0.649	1.00
185_K	188_I	0.645	1.00
19_S	23_E	0.644	1.00
6_I	9_L	0.642	1.00
367_Q	371_E	0.642	1.00
365_P	368_L	0.641	1.00
116_N	120_G	0.641	1.00
160_A	183_N	0.640	1.00
8_L	12_L	0.640	1.00
58_P	317_K	0.640	1.00
121_A	325_A	0.639	1.00
211_A	227_M	0.638	1.00
73_N	98_V	0.638	1.00
16_A	19_S	0.638	1.00
288_T	294_V	0.635	1.00
361_L	365_P	0.634	1.00
237_L	242_M	0.634	1.00
115_S	118_G	0.632	1.00
74_T	77_I	0.630	1.00
242_M	245_S	0.628	1.00
19_S	22_K	0.627	1.00
275_K	278_D	0.626	1.00
153_R	258_G	0.626	1.00
113_V	312_T	0.626	1.00
124_D	344_K	0.625	1.00
31_I	315_A	0.624	1.00
256_M	276_E	0.624	1.00
302_T	306_G	0.622	1.00
8_L	15_C	0.622	1.00
116_N	320_T	0.621	1.00
6_I	13_V	0.619	1.00
71_A	75_K	0.618	1.00
222_L	423_L	0.618	1.00
185_K	189_A	0.616	1.00
123_Y	347_V	0.616	1.00
53_F	58_P	0.615	1.00
276_E	279_P	0.611	1.00
254_A	257_N	0.610	1.00
32_E	79_L	0.609	1.00
389_M	395_S	0.609	1.00
163_E	174_V	0.609	1.00
357_V	361_L	0.609	1.00
271_P	274_I	0.609	1.00
61_T	64_Q	0.607	1.00
112_T	316_E	0.606	1.00
11_A	14_S	0.605	1.00
343_N	347_V	0.604	1.00
127_L	132_T	0.604	1.00
28_N	60_I	0.603	1.00
49_L	321_F	0.602	1.00
412_L	416_L	0.601	1.00
252_K	256_M	0.600	1.00
23_E	26_K	0.598	1.00
179_N	186_Y	0.598	1.00
184_K	187_G	0.597	1.00
193_A	247_D	0.596	1.00
349_T	353_K	0.596	1.00
170_Q	174_V	0.595	1.00
342_V	346_V	0.595	1.00
160_A	174_V	0.593	1.00
179_N	241_T	0.592	1.00
160_A	164_E	0.592	1.00
87_E	315_A	0.592	1.00
77_I	81_R	0.591	1.00
65_V	86_P	0.590	1.00
152_Y	262_M	0.590	1.00
101_K	134_D	0.590	1.00
369_I	373_P	0.588	1.00
365_P	369_I	0.588	1.00
56_E	317_K	0.587	1.00
211_A	226_E	0.587	1.00
269_I	273_V	0.586	1.00
18_I	22_K	0.585	1.00
224_T	420_Q	0.584	1.00
405_V	410_A	0.584	1.00
412_L	415_T	0.581	1.00
65_V	75_K	0.581	1.00
97_K	133_E	0.581	1.00
312_T	315_A	0.579	1.00
251_V	263_A	0.579	1.00
88_V	303_I	0.578	1.00
110_V	319_V	0.578	1.00
96_A	100_D	0.578	1.00
90_E	303_I	0.577	1.00
302_T	305_A	0.577	1.00
316_E	319_V	0.575	1.00
32_E	87_E	0.574	1.00
288_T	291_N	0.574	1.00
111_A	132_T	0.574	1.00
301_L	304_T	0.574	1.00
186_Y	190_L	0.572	1.00
46_I	49_L	0.571	1.00
325_A	343_N	0.570	1.00
7_V	14_S	0.569	1.00
206_A	230_A	0.568	1.00
164_E	170_Q	0.567	1.00
344_K	347_V	0.567	1.00
165_P	174_V	0.567	1.00
164_E	174_V	0.566	1.00
150_I	264_I	0.564	1.00
130_V	140_G	0.564	1.00
54_E	59_G	0.564	1.00
404_N	415_T	0.564	1.00
183_N	187_G	0.562	1.00
96_A	140_G	0.562	1.00
151_W	270_L	0.561	1.00
73_N	77_I	0.560	1.00
389_M	392_V	0.559	1.00
7_V	11_A	0.558	1.00
358_I	361_L	0.558	1.00
58_P	314_A	0.557	1.00
33_F	90_E	0.557	1.00
272_A	276_E	0.556	1.00
29_V	32_E	0.556	1.00
8_L	11_A	0.556	1.00
178_L	262_M	0.555	1.00
154_K	280_K	0.555	1.00
85_L	308_K	0.553	1.00
342_V	347_V	0.551	1.00
353_K	359_K	0.549	1.00
80_S	306_G	0.549	1.00
289_E	292_S	0.549	1.00
190_L	194_E	0.549	1.00
219_K	424_D	0.548	1.00
301_L	306_G	0.547	1.00
230_A	234_Y	0.546	1.00
362_G	369_I	0.545	1.00
21_C	27_T	0.544	1.00
54_E	60_I	0.543	1.00
355_N	359_K	0.543	1.00
160_A	261_P	0.542	1.00
118_G	320_T	0.542	1.00
237_L	243_P	0.539	1.00
241_T	244_G	0.537	1.00
205_F	230_A	0.537	1.00
341_P	344_K	0.536	1.00
358_I	362_G	0.536	1.00
92_S	95_Y	0.534	1.00
303_I	319_V	0.533	1.00
303_I	322_M	0.531	1.00
79_L	82_S	0.530	1.00
308_K	312_T	0.529	1.00
91_T	99_M	0.529	1.00
388_R	392_V	0.527	1.00
157_L	164_E	0.527	1.00
206_A	209_N	0.525	1.00
269_I	272_A	0.525	1.00
7_V	10_S	0.525	1.00
404_N	408_G	0.525	1.00
141_V	319_V	0.523	1.00
33_F	64_Q	0.521	1.00
150_I	171_L	0.521	1.00
252_K	265_Y	0.521	1.00
32_E	35_H	0.519	1.00
69_E	72_Y	0.517	1.00
158_A	161_G	0.517	1.00
290_K	293_A	0.517	1.00
47_S	64_Q	0.516	1.00
370_G	374_N	0.515	1.00
45_V	49_L	0.515	1.00
203_S	207_L	0.514	1.00
274_I	282_V	0.513	1.00
200_Q	204_Q	0.513	1.00
189_A	254_A	0.512	1.00
356_D	361_L	0.511	1.00
69_E	73_N	0.508	1.00
164_E	285_V	0.507	1.00
226_E	230_A	0.507	1.00
132_T	136_S	0.507	1.00
119_E	132_T	0.506	1.00
87_E	307_Q	0.505	1.00
169_Q	233_Y	0.503	1.00
402_V	406_T	0.503	1.00
366_N	369_I	0.502	1.00
114_I	316_E	0.502	1.00
339_A	342_V	0.500	1.00
187_G	190_L	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4r2fA	1	0.8884	100	0.165	Contact Map
4r9fA	1	0.8628	100	0.166	Contact Map
3uorA	1	0.8721	100	0.168	Contact Map
4mfiA	1	0.8814	100	0.179	Contact Map
4r6kA	1	0.8907	100	0.201	Contact Map
3vxbA	1	0.8651	100	0.218	Contact Map
4ovjA	1	0.8744	100	0.237	Contact Map
3k01A	1	0.8791	100	0.239	Contact Map
4r6hA	1	0.8674	100	0.24	Contact Map
1eu8A	1	0.8907	100	0.24	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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