YCGG - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YCGG - Uncharacterized protein YcgG

UniProt:	P75995	Sequences: MRNTLIPILVAICLFITGVAILNIQLWYSAKAEYLAGARYAANNINHILEEASQATQTAVNIAGKECNLEEQYQLGTEAALKPHLRTIIILKQGIVWCTSLPGNRVLLSRIPVFPDSNLLLAPAIDTVNRLPILLYQNQFADTRILVTISDQHIRGALNVPLKGVRYVLRVADDIIGPTGDVMTLNGHYPYTEKVHSTKYHFTIIFNPPPLFSFYRLIDKGFGILIFILLIACAAAFLLDRYFNKSATPEEILRRAINNGEIVPFYQPVVNGREGTLRGVEVLARWKQPHGGYISPAAFIPLAEKSGLIVPLTQSLMNQVARQMNAIASKLPEGFHIGINFSASHIISPTFVDECLNFRDSFTRRDLNLVLEVTEREPLNVDESLVQRLNILHENGFVIALDDFGTGYSGLSYLHDLHIDYIKIDHSFVGRVNADPESTRILDCVLDLARKLSISIVAEGVETKEQLDYLNQNYITFQQGYYFYKPVTYIDLVKIILSKPKVKVVVE	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13888
Length:	507 (411)
Sequences:	18823 (14943)
Seq/√Len:	737.1

ECOLI - YCGG DOSP YEGE YLIE YFGF YFEA GMR YHJK CSRD YLAB YJCC ADRB RTN BLUF YAHA
BACSU - YKOW YKUI

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
280_V	492_L	4.013	1.00
272_G	478_Q	3.914	1.00
314_Q	354_E	3.497	1.00
356_L	395_N	3.296	1.00
313_T	345_H	3.183	1.00
426_H	430_G	3.055	1.00
318_N	361_S	2.942	1.00
104_N	108_L	2.928	1.00
263_V	287_K	2.921	1.00
266_Y	323_Q	2.902	1.00
393_H	420_D	2.850	1.00
245_K	298_A	2.799	1.00
370_V	421_Y	2.798	1.00
484_Y	487_V	2.792	1.00
271_N	274_E	2.647	1.00
328_A	368_N	2.588	1.00
469_Y	473_N	2.578	1.00
170_R	173_D	2.562	1.00
325_N	329_S	2.548	1.00
450_R	476_T	2.470	1.00
464_K	468_D	2.424	1.00
252_I	288_Q	2.346	1.00
467_L	483_F	2.252	1.00
315_S	319_Q	2.231	1.00
323_Q	489_Y	2.203	1.00
400_A	421_Y	2.145	1.00
443_D	451_K	2.131	1.00
288_Q	292_G	2.107	1.00
255_R	259_N	2.102	1.00
133_I	206_F	2.096	1.00
415_H	438_S	2.078	1.00
319_Q	322_R	2.063	1.00
303_A	312_L	2.021	1.00
284_A	316_L	1.998	1.00
461_V	478_Q	1.993	1.00
287_K	293_Y	1.971	1.00
246_S	305_K	1.938	1.00
439_T	469_Y	1.930	1.00
321_A	358_F	1.929	1.00
319_Q	323_Q	1.906	1.00
467_L	478_Q	1.901	1.00
463_T	466_Q	1.878	1.00
135_L	202_F	1.875	1.00
263_V	293_Y	1.865	1.00
443_D	473_N	1.856	1.00
260_G	319_Q	1.855	1.00
269_V	477_F	1.853	1.00
265_F	488_T	1.812	1.00
365_R	368_N	1.810	1.00
213_S	216_R	1.764	1.00
488_T	491_D	1.759	1.00
264_P	316_L	1.748	1.00
269_V	421_Y	1.745	1.00
389_L	399_I	1.723	1.00
324_M	364_R	1.721	1.00
318_N	358_F	1.721	1.00
341_F	351_F	1.718	1.00
370_V	400_A	1.716	1.00
358_F	362_F	1.714	1.00
336_H	398_V	1.711	1.00
433_N	439_T	1.706	1.00
421_Y	457_V	1.701	1.00
140_F	201_H	1.694	1.00
270_V	483_F	1.685	1.00
323_Q	327_I	1.675	1.00
156_G	159_N	1.666	1.00
228_I	233_C	1.666	1.00
467_L	471_N	1.662	1.00
443_D	447_D	1.662	1.00
288_Q	291_G	1.641	1.00
398_V	420_D	1.635	1.00
318_N	362_F	1.633	1.00
146_L	154_I	1.626	1.00
422_I	449_A	1.623	1.00
464_K	482_Y	1.604	1.00
265_F	293_Y	1.592	1.00
467_L	482_Y	1.592	1.00
446_L	473_N	1.579	1.00
433_N	465_E	1.565	1.00
446_L	475_I	1.562	1.00
455_S	477_F	1.559	1.00
269_V	370_V	1.556	1.00
208_P	211_L	1.537	1.00
330_K	493_V	1.537	1.00
455_S	476_T	1.533	1.00
359_R	397_F	1.531	1.00
204_I	234_A	1.525	1.00
336_H	370_V	1.521	1.00
278_R	477_F	1.520	1.00
160_V	189_Y	1.520	1.00
190_P	195_V	1.509	1.00
261_E	288_Q	1.499	1.00
481_Y	486_P	1.492	1.00
327_I	489_Y	1.476	1.00
262_I	284_A	1.464	1.00
95_I	98_C	1.448	1.00
415_H	431_R	1.448	1.00
401_L	419_I	1.445	1.00
160_V	163_K	1.433	1.00
341_F	371_L	1.426	1.00
94_G	98_C	1.423	1.00
357_N	361_S	1.417	1.00
487_V	495_I	1.408	1.00
421_Y	455_S	1.391	1.00
109_S	177_G	1.390	1.00
433_N	469_Y	1.376	1.00
328_A	365_R	1.371	1.00
163_K	166_R	1.369	1.00
269_V	279_G	1.363	1.00
264_P	315_S	1.359	1.00
284_A	312_L	1.349	1.00
326_A	330_K	1.348	1.00
211_L	220_K	1.344	1.00
426_H	460_G	1.338	1.00
157_A	198_T	1.335	1.00
491_D	494_K	1.327	1.00
322_R	362_F	1.321	1.00
386_V	390_N	1.304	1.00
310_V	348_S	1.303	1.00
320_V	337_I	1.287	1.00
356_L	391_I	1.287	1.00
277_L	495_I	1.285	1.00
245_K	291_G	1.285	1.00
432_V	469_Y	1.278	1.00
261_E	286_W	1.268	1.00
95_I	99_T	1.255	1.00
323_Q	326_A	1.254	1.00
156_G	192_T	1.253	1.00
458_A	475_I	1.251	1.00
359_R	366_D	1.247	1.00
449_A	456_I	1.245	1.00
468_D	471_N	1.239	1.00
255_R	261_E	1.234	1.00
386_V	416_D	1.232	1.00
131_L	209_P	1.230	1.00
291_G	298_A	1.228	1.00
354_E	358_F	1.224	1.00
334_G	368_N	1.219	1.00
324_M	337_I	1.212	1.00
252_I	291_G	1.208	1.00
228_I	231_I	1.208	1.00
271_N	276_T	1.207	1.00
284_A	315_S	1.202	1.00
478_Q	483_F	1.200	1.00
160_V	164_G	1.195	1.00
91_L	95_I	1.187	1.00
220_K	240_D	1.181	1.00
141_A	144_R	1.179	1.00
271_N	278_R	1.178	1.00
114_F	162_L	1.177	1.00
272_G	467_L	1.175	1.00
390_N	394_E	1.173	1.00
216_R	220_K	1.166	1.00
352_V	356_L	1.161	1.00
161_P	185_L	1.154	1.00
484_Y	495_I	1.153	1.00
356_L	360_D	1.152	1.00
419_I	454_I	1.152	1.00
144_R	250_E	1.151	1.00
139_Q	161_P	1.149	1.00
468_D	472_Q	1.148	1.00
184_T	187_G	1.141	1.00
205_I	220_K	1.138	1.00
182_V	232_A	1.137	1.00
370_V	398_V	1.134	1.00
464_K	467_L	1.129	1.00
138_N	229_L	1.126	1.00
99_T	103_G	1.126	1.00
275_G	471_N	1.126	1.00
137_Q	200_Y	1.122	1.00
227_F	233_C	1.122	1.00
447_D	451_K	1.122	1.00
269_V	338_G	1.113	1.00
325_N	328_A	1.110	1.00
487_V	491_D	1.109	1.00
355_C	371_L	1.102	1.00
433_N	463_T	1.102	1.00
88_I	91_L	1.099	1.00
435_D	438_S	1.098	1.00
421_Y	477_F	1.089	1.00
432_V	442_L	1.087	1.00
262_I	315_S	1.085	1.00
327_I	493_V	1.083	1.00
248_T	252_I	1.083	1.00
324_M	328_A	1.082	1.00
156_G	160_V	1.078	1.00
98_C	101_L	1.077	1.00
279_G	336_H	1.072	1.00
338_G	370_V	1.070	1.00
347_I	380_N	1.069	1.00
355_C	392_L	1.069	1.00
169_L	175_I	1.068	1.00
343_A	376_R	1.066	1.00
263_V	488_T	1.064	1.00
352_V	391_I	1.064	1.00
107_L	118_N	1.043	1.00
325_N	362_F	1.043	1.00
306_S	310_V	1.042	1.00
185_L	200_Y	1.041	1.00
352_V	388_R	1.034	1.00
210_P	234_A	1.027	1.00
253_L	303_A	1.026	1.00
318_N	322_R	1.025	1.00
321_A	369_L	1.024	1.00
119_L	123_P	1.017	1.00
136_Y	225_L	1.016	1.00
444_C	451_K	1.015	1.00
269_V	336_H	1.013	1.00
269_V	457_V	1.009	1.00
440_R	451_K	1.008	1.00
320_V	339_I	1.002	1.00
132_P	207_N	1.002	1.00
249_P	302_L	1.001	1.00
469_Y	472_Q	0.999	1.00
186_N	230_L	0.998	1.00
384_S	388_R	0.989	1.00
296_P	299_F	0.987	1.00
371_L	397_F	0.985	1.00
297_A	426_H	0.983	1.00
101_L	105_R	0.982	1.00
92_K	95_I	0.981	1.00
240_D	244_N	0.979	1.00
261_E	289_P	0.973	1.00
153_H	156_G	0.972	1.00
446_L	456_I	0.972	1.00
388_R	391_I	0.972	1.00
489_Y	493_V	0.971	1.00
264_P	320_V	0.965	1.00
325_N	363_T	0.965	1.00
311_P	314_Q	0.965	1.00
252_I	290_H	0.964	1.00
139_Q	200_Y	0.962	1.00
270_V	495_I	0.962	1.00
159_N	163_K	0.962	1.00
207_N	217_L	0.957	1.00
199_K	230_L	0.954	1.00
250_E	254_R	0.953	1.00
382_D	417_L	0.951	1.00
260_G	315_S	0.946	1.00
255_R	258_N	0.945	1.00
322_R	326_A	0.940	1.00
457_V	477_F	0.935	1.00
291_G	294_I	0.934	1.00
164_G	189_Y	0.933	1.00
348_S	354_E	0.933	1.00
110_R	118_N	0.927	1.00
391_I	394_E	0.925	1.00
273_R	476_T	0.924	1.00
288_Q	294_I	0.920	1.00
123_P	126_D	0.917	1.00
104_N	113_V	0.915	1.00
169_L	173_D	0.914	1.00
350_T	354_E	0.911	1.00
165_V	175_I	0.911	1.00
280_V	335_F	0.910	1.00
358_F	361_S	0.909	1.00
168_V	184_T	0.907	1.00
146_L	155_R	0.905	1.00
183_M	186_N	0.904	1.00
281_E	340_N	0.904	1.00
101_L	104_N	0.903	1.00
433_N	466_Q	0.903	1.00
308_L	311_P	0.903	1.00
182_V	202_F	0.900	1.00
97_W	101_L	0.900	1.00
271_N	476_T	0.900	1.00
168_V	180_G	0.899	1.00
206_F	234_A	0.899	1.00
260_G	318_N	0.899	1.00
216_R	219_D	0.898	1.00
121_L	124_A	0.896	1.00
387_Q	391_I	0.892	1.00
258_N	311_P	0.890	1.00
152_Q	215_Y	0.888	1.00
94_G	97_W	0.886	1.00
317_M	358_F	0.884	1.00
237_F	241_R	0.879	1.00
264_P	282_V	0.877	1.00
195_V	255_R	0.876	1.00
300_I	309_I	0.876	1.00
323_Q	493_V	0.874	1.00
273_R	471_N	0.874	1.00
353_D	391_I	0.871	1.00
97_W	102_P	0.868	1.00
250_E	306_S	0.868	1.00
223_G	239_L	0.867	1.00
282_V	337_I	0.867	1.00
289_P	292_G	0.861	1.00
430_G	466_Q	0.861	1.00
115_P	174_D	0.860	1.00
253_L	262_I	0.858	1.00
256_A	261_E	0.857	1.00
304_E	309_I	0.855	1.00
351_F	355_C	0.851	1.00
264_P	284_A	0.850	1.00
326_A	489_Y	0.849	1.00
353_D	357_N	0.848	1.00
381_V	384_S	0.848	1.00
266_Y	280_V	0.845	1.00
336_H	368_N	0.844	1.00
321_A	364_R	0.841	1.00
379_L	413_Y	0.841	1.00
256_A	262_I	0.838	1.00
185_L	189_Y	0.837	1.00
93_Q	96_V	0.837	1.00
446_L	450_R	0.834	1.00
203_T	224_I	0.833	1.00
102_P	105_R	0.831	1.00
326_A	329_S	0.830	1.00
153_H	194_K	0.829	1.00
136_Y	221_G	0.823	1.00
141_A	250_E	0.822	1.00
97_W	100_S	0.820	1.00
190_P	193_E	0.820	1.00
266_Y	282_V	0.820	1.00
364_R	369_L	0.820	1.00
87_T	90_I	0.819	1.00
354_E	357_N	0.815	1.00
103_G	107_L	0.815	1.00
96_V	100_S	0.815	1.00
107_L	115_P	0.815	1.00
493_V	497_L	0.814	1.00
314_Q	318_N	0.812	1.00
222_F	226_I	0.812	1.00
135_L	204_I	0.811	1.00
310_V	345_H	0.811	1.00
121_L	126_D	0.810	1.00
145_I	154_I	0.810	1.00
398_V	455_S	0.809	1.00
461_V	467_L	0.808	1.00
284_A	299_F	0.808	1.00
317_M	355_C	0.808	1.00
314_Q	358_F	0.807	1.00
254_R	308_L	0.807	1.00
204_I	232_A	0.806	1.00
143_T	147_V	0.804	1.00
97_W	105_R	0.803	1.00
96_V	99_T	0.802	1.00
236_A	239_L	0.800	1.00
203_T	221_G	0.799	1.00
257_I	315_S	0.798	1.00
447_D	450_R	0.791	1.00
254_R	311_P	0.789	1.00
470_L	475_I	0.785	1.00
167_Y	184_T	0.784	1.00
415_H	441_I	0.784	1.00
275_G	467_L	0.783	1.00
321_A	362_F	0.780	1.00
440_R	443_D	0.779	1.00
250_E	302_L	0.779	1.00
416_D	437_E	0.778	1.00
303_A	309_I	0.774	1.00
461_V	470_L	0.773	1.00
349_P	384_S	0.771	1.00
138_N	146_L	0.771	1.00
386_V	418_H	0.770	1.00
205_I	217_L	0.769	1.00
95_I	101_L	0.769	1.00
372_E	423_K	0.768	1.00
119_L	214_F	0.764	1.00
99_T	102_P	0.763	1.00
140_F	199_K	0.763	1.00
387_Q	390_N	0.762	1.00
450_R	456_I	0.761	1.00
136_Y	178_P	0.758	1.00
384_S	387_Q	0.755	1.00
111_I	159_N	0.753	1.00
91_L	94_G	0.751	1.00
151_D	222_F	0.747	1.00
266_Y	489_Y	0.746	1.00
270_V	277_L	0.745	1.00
268_P	484_Y	0.744	1.00
494_K	497_L	0.744	1.00
306_S	309_I	0.743	1.00
157_A	189_Y	0.743	1.00
382_D	386_V	0.742	1.00
162_L	175_I	0.742	1.00
98_C	102_P	0.741	1.00
390_N	418_H	0.739	1.00
138_N	226_I	0.737	1.00
205_I	221_G	0.735	1.00
429_V	432_V	0.734	1.00
374_T	403_D	0.732	1.00
108_L	115_P	0.728	1.00
439_T	443_D	0.727	1.00
458_A	470_L	0.724	1.00
191_Y	196_H	0.724	1.00
92_K	96_V	0.723	1.00
282_V	320_V	0.721	1.00
137_Q	202_F	0.716	1.00
120_L	124_A	0.715	1.00
142_D	146_L	0.713	1.00
404_F	445_V	0.712	1.00
149_I	196_H	0.711	1.00
431_R	438_S	0.709	1.00
142_D	158_L	0.708	1.00
143_T	226_I	0.706	1.00
328_A	334_G	0.706	1.00
268_P	487_V	0.705	1.00
431_R	434_A	0.703	1.00
140_F	230_L	0.702	1.00
436_P	439_T	0.699	1.00
317_M	339_I	0.698	1.00
429_V	458_A	0.695	1.00
164_G	188_H	0.694	1.00
142_D	154_I	0.692	1.00
153_H	191_Y	0.690	1.00
403_D	459_E	0.690	1.00
268_P	277_L	0.689	1.00
326_A	493_V	0.687	1.00
481_Y	485_K	0.687	1.00
438_S	466_Q	0.683	1.00
126_D	212_F	0.683	1.00
93_Q	97_W	0.681	1.00
149_I	194_K	0.681	1.00
492_L	495_I	0.677	1.00
145_I	157_A	0.676	1.00
309_I	344_S	0.673	1.00
141_A	305_K	0.671	1.00
220_K	235_A	0.666	1.00
170_R	180_G	0.666	1.00
235_A	240_D	0.665	1.00
97_W	103_G	0.665	1.00
265_F	287_K	0.664	1.00
353_D	356_L	0.664	1.00
314_Q	357_N	0.663	1.00
295_S	298_A	0.663	1.00
227_F	242_Y	0.661	1.00
182_V	200_Y	0.661	1.00
297_A	301_P	0.661	1.00
238_L	242_Y	0.660	1.00
487_V	492_L	0.658	1.00
248_T	291_G	0.657	1.00
446_L	470_L	0.656	1.00
287_K	292_G	0.652	1.00
401_L	413_Y	0.652	1.00
346_I	377_E	0.652	1.00
346_I	388_R	0.651	1.00
161_P	165_V	0.651	1.00
238_L	241_R	0.651	1.00
424_I	475_I	0.650	1.00
439_T	473_N	0.649	1.00
253_L	308_L	0.648	1.00
272_G	471_N	0.647	1.00
197_S	254_R	0.647	1.00
280_V	337_I	0.645	1.00
335_F	368_N	0.645	1.00
352_V	395_N	0.643	1.00
382_D	385_L	0.643	1.00
431_R	435_D	0.641	1.00
398_V	421_Y	0.641	1.00
241_R	245_K	0.639	1.00
182_V	230_L	0.636	1.00
201_H	228_I	0.636	1.00
207_N	211_L	0.636	1.00
248_T	290_H	0.633	1.00
235_A	239_L	0.632	1.00
369_L	397_F	0.629	1.00
270_V	275_G	0.627	1.00
90_I	95_I	0.627	1.00
359_R	362_F	0.626	1.00
91_L	99_T	0.624	1.00
456_I	476_T	0.624	1.00
161_P	189_Y	0.624	1.00
244_N	248_T	0.623	1.00
132_P	217_L	0.622	1.00
339_I	369_L	0.620	1.00
462_E	481_Y	0.619	1.00
166_R	175_I	0.618	1.00
188_H	195_V	0.618	1.00
406_T	427_S	0.617	1.00
324_M	334_G	0.617	1.00
324_M	368_N	0.616	1.00
253_L	256_A	0.615	1.00
153_H	196_H	0.614	1.00
275_G	464_K	0.612	1.00
252_I	255_R	0.612	1.00
121_L	132_P	0.611	1.00
318_N	354_E	0.610	1.00
328_A	331_L	0.609	1.00
252_I	286_W	0.608	1.00
87_T	91_L	0.608	1.00
88_I	92_K	0.606	1.00
314_Q	345_H	0.604	1.00
391_I	395_N	0.604	1.00
242_Y	246_S	0.602	1.00
149_I	153_H	0.600	1.00
168_V	181_D	0.599	1.00
343_A	377_E	0.599	1.00
263_V	490_I	0.599	1.00
355_C	358_F	0.598	1.00
324_M	369_L	0.596	1.00
415_H	435_D	0.596	1.00
163_K	167_Y	0.596	1.00
310_V	314_Q	0.595	1.00
337_I	364_R	0.595	1.00
314_Q	348_S	0.594	1.00
243_F	247_A	0.594	1.00
115_P	176_I	0.593	1.00
355_C	397_F	0.593	1.00
422_I	454_I	0.593	1.00
303_A	307_G	0.592	1.00
212_F	216_R	0.589	1.00
111_I	155_R	0.588	1.00
344_S	347_I	0.587	1.00
445_V	449_A	0.587	1.00
441_I	445_V	0.585	1.00
470_L	478_Q	0.585	1.00
429_V	442_L	0.585	1.00
492_L	496_I	0.585	1.00
253_L	312_L	0.585	1.00
140_F	231_I	0.585	1.00
493_V	496_I	0.584	1.00
413_Y	416_D	0.584	1.00
265_F	486_P	0.583	1.00
330_K	497_L	0.581	1.00
406_T	428_F	0.580	1.00
327_I	492_L	0.575	1.00
371_L	399_I	0.575	1.00
146_L	158_L	0.574	1.00
138_N	142_D	0.574	1.00
99_T	104_N	0.573	1.00
359_R	364_R	0.570	1.00
436_P	440_R	0.568	1.00
379_L	385_L	0.567	1.00
117_S	155_R	0.564	1.00
146_L	229_L	0.561	1.00
317_M	341_F	0.561	1.00
340_N	423_K	0.560	1.00
325_N	364_R	0.559	1.00
241_R	244_N	0.559	1.00
364_R	368_N	0.558	1.00
147_V	226_I	0.556	1.00
317_M	321_A	0.555	1.00
152_Q	192_T	0.555	1.00
152_Q	219_D	0.554	1.00
227_F	239_L	0.554	1.00
249_P	252_I	0.552	1.00
92_K	98_C	0.552	1.00
357_N	360_D	0.552	1.00
143_T	146_L	0.552	1.00
389_L	418_H	0.551	1.00
262_I	286_W	0.550	1.00
131_L	206_F	0.550	1.00
109_S	112_P	0.549	1.00
367_L	398_V	0.547	1.00
314_Q	350_T	0.547	1.00
392_L	397_F	0.546	1.00
89_I	95_I	0.545	1.00
283_L	340_N	0.544	1.00
440_R	444_C	0.544	1.00
281_E	423_K	0.543	1.00
260_G	322_R	0.543	1.00
152_Q	156_G	0.542	1.00
312_L	316_L	0.542	1.00
156_G	191_Y	0.541	1.00
350_T	353_D	0.541	1.00
294_I	301_P	0.541	1.00
287_K	291_G	0.539	1.00
399_I	420_D	0.538	1.00
341_F	345_H	0.538	1.00
133_I	204_I	0.537	1.00
415_H	437_E	0.536	1.00
436_P	453_S	0.534	1.00
432_V	470_L	0.534	1.00
351_F	354_E	0.533	1.00
182_V	186_N	0.532	1.00
263_V	319_Q	0.532	1.00
304_E	342_S	0.532	1.00
125_I	132_P	0.530	1.00
247_A	251_E	0.528	1.00
490_I	493_V	0.526	1.00
313_T	316_L	0.526	1.00
388_R	392_L	0.526	1.00
340_N	402_D	0.525	1.00
164_G	184_T	0.525	1.00
465_E	468_D	0.524	1.00
307_G	344_S	0.524	1.00
345_H	351_F	0.523	1.00
444_C	448_L	0.523	1.00
412_S	427_S	0.522	1.00
437_E	453_S	0.522	1.00
413_Y	417_L	0.521	1.00
276_T	333_E	0.521	1.00
233_C	239_L	0.520	1.00
449_A	454_I	0.519	1.00
332_P	335_F	0.518	1.00
134_L	221_G	0.518	1.00
248_T	251_E	0.517	1.00
275_G	483_F	0.516	1.00
151_D	154_I	0.516	1.00
483_F	486_P	0.515	1.00
343_A	413_Y	0.513	1.00
382_D	416_D	0.513	1.00
206_F	209_P	0.509	1.00
390_N	393_H	0.509	1.00
374_T	459_E	0.508	1.00
245_K	249_P	0.508	1.00
279_G	338_G	0.508	1.00
257_I	312_L	0.508	1.00
448_L	452_L	0.507	1.00
442_L	458_A	0.507	1.00
281_E	402_D	0.507	1.00
134_L	218_I	0.506	1.00
95_I	102_P	0.505	1.00
264_P	319_Q	0.504	1.00
383_E	416_D	0.504	1.00
191_Y	194_K	0.504	1.00
90_I	101_L	0.504	1.00
104_N	107_L	0.503	1.00
210_P	220_K	0.502	1.00
111_I	146_L	0.502	1.00
91_L	98_C	0.501	0.99
277_L	484_Y	0.501	0.99
100_S	105_R	0.500	0.99
245_K	248_T	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4rnhA	2	0.7633	100	0.209	Contact Map
4j40A	2	0.4951	100	0.232	Contact Map
3pjxA	1	0.7653	100	0.252	Contact Map
4hjfA	1	0.5148	100	0.353	Contact Map
3gfzA	2	0.7239	100	0.373	Contact Map
4kieA	1	0.5148	100	0.425	Contact Map
4hu4A	1	0.4872	100	0.435	Contact Map
2r6oA	2	0.5069	100	0.437	Contact Map
4rniA	2	0.501	100	0.438	Contact Map
3sy8A	6	0.7771	100	0.442	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0128 seconds.