BLUF - ECOLI - GREMLIN Contacts

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BLUF - Blue light- and temperature-regulated antirepressor BluF

UniProt:	P75990	Sequences: MLTTLIYRSHIRDDEPVKKIEEMVSIANRRNMQSDVTGILLFNGSHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAGMELFDLRLHERDDVLQAVFDKGTSKFQLTYDDRALQFFRTFVLATEQSTYFEIPAEDSWLFIADGSDKELDSCALSPTINDHFAFHPIVDPLSRRIIAFEAIVQKNEDSPSAIAVGQRKDGEIYTADLKSKALAFTMAHALELGDKMISINLLPMTLVNEPDAVSFLLNEIKANALVPEQIIVEFTESEVISRFDEFAEAIKSLKAAGISVAIDHFGAGFAGLLLLSRFQPDRIKISQELITNVHKSGPRQAIIQAIIKCCTSLEIQVSAMGVATPEEWMWLESAGIEMFQGDLFAKAKLNGIPSIAWPEKK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13887
Length:	403 (390)
Sequences:	19945 (16075)
Seq/√Len:	814.0

ECOLI - BLUF GMR YEGE YLIE DOSP YFGF YFEA YHJK CSRD YLAB YJCC RTN YCGG ADRB YAHA YHJH
BACSU - YKOW YKUI

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
182_P	381_F	3.818	1.00
190_F	395_P	3.817	1.00
4_T	8_R	3.434	1.00
75_V	79_C	3.390	1.00
219_L	257_F	3.280	1.00
218_D	247_T	3.131	1.00
259_L	298_A	3.083	1.00
329_Q	333_T	2.999	1.00
173_H	197_N	2.916	1.00
223_A	264_A	2.898	1.00
296_K	323_D	2.875	1.00
387_A	390_K	2.864	1.00
176_F	228_M	2.823	1.00
273_I	324_R	2.673	1.00
181_D	184_S	2.610	1.00
70_R	73_N	2.560	1.00
155_D	203_A	2.538	1.00
367_P	371_M	2.532	1.00
233_E	271_Q	2.504	1.00
162_D	198_E	2.457	1.00
372_W	376_A	2.446	1.00
353_T	379_E	2.429	1.00
230_H	234_L	2.243	1.00
370_W	386_F	2.200	1.00
208_Q	217_A	2.085	1.00
228_M	392_N	2.085	1.00
220_K	224_L	2.066	1.00
303_A	324_R	2.064	1.00
346_Q	354_S	2.040	1.00
318_S	341_R	2.038	1.00
15_E	19_K	1.991	1.00
165_A	169_T	1.990	1.00
194_V	221_S	1.971	1.00
156_G	210_K	1.957	1.00
224_L	227_T	1.943	1.00
366_T	369_E	1.940	1.00
121_Y	124_R	1.930	1.00
39_I	114_T	1.879	1.00
170_I	224_L	1.871	1.00
370_W	381_F	1.864	1.00
226_F	261_E	1.852	1.00
75_V	80_D	1.848	1.00
342_Q	372_W	1.841	1.00
175_A	391_L	1.810	1.00
224_L	228_M	1.805	1.00
41_L	91_G	1.801	1.00
179_I	380_M	1.797	1.00
228_M	232_L	1.771	1.00
364_V	381_F	1.767	1.00
174_F	221_S	1.761	1.00
41_L	110_F	1.751	1.00
268_V	271_Q	1.733	1.00
238_M	301_S	1.719	1.00
292_I	302_V	1.718	1.00
180_V	386_F	1.690	1.00
324_R	360_S	1.689	1.00
273_I	303_A	1.665	1.00
24_V	122_D	1.665	1.00
336_H	342_Q	1.664	1.00
179_I	324_R	1.657	1.00
261_E	265_N	1.657	1.00
346_Q	376_A	1.646	1.00
223_A	261_E	1.643	1.00
367_P	385_L	1.632	1.00
134_L	143_E	1.624	1.00
370_W	374_E	1.619	1.00
391_L	394_I	1.616	1.00
336_H	368_E	1.614	1.00
19_K	23_M	1.607	1.00
301_S	323_D	1.604	1.00
223_A	265_N	1.604	1.00
229_A	267_L	1.596	1.00
346_Q	350_K	1.584	1.00
56_E	59_K	1.576	1.00
349_I	376_A	1.575	1.00
325_I	352_C	1.574	1.00
171_N	198_E	1.573	1.00
349_I	378_I	1.550	1.00
137_E	143_E	1.545	1.00
232_L	392_N	1.525	1.00
46_H	109_V	1.507	1.00
243_L	274_V	1.505	1.00
262_I	300_I	1.504	1.00
358_Q	379_E	1.501	1.00
243_L	254_A	1.499	1.00
235_G	396_S	1.487	1.00
116_K	119_L	1.485	1.00
384_D	389_A	1.483	1.00
370_W	385_L	1.474	1.00
358_Q	380_M	1.472	1.00
179_I	273_I	1.469	1.00
60_M	63_R	1.467	1.00
304_I	322_P	1.463	1.00
238_M	273_I	1.450	1.00
188_I	380_M	1.440	1.00
329_Q	363_G	1.427	1.00
47_F	139_S	1.427	1.00
179_I	189_A	1.424	1.00
172_D	194_V	1.423	1.00
20_I	75_V	1.407	1.00
112_K	144_I	1.395	1.00
23_M	26_I	1.391	1.00
318_S	334_N	1.377	1.00
63_R	66_C	1.364	1.00
119_L	126_L	1.362	1.00
233_E	268_V	1.353	1.00
336_H	372_W	1.352	1.00
171_N	196_K	1.352	1.00
133_V	136_T	1.328	1.00
60_M	102_R	1.326	1.00
394_I	397_I	1.319	1.00
260_N	264_A	1.308	1.00
259_L	294_S	1.298	1.00
324_R	358_Q	1.289	1.00
39_I	87_F	1.285	1.00
4_T	13_D	1.278	1.00
335_V	372_W	1.278	1.00
361_A	378_I	1.276	1.00
227_T	265_N	1.270	1.00
289_A	293_K	1.263	1.00
174_F	220_K	1.262	1.00
231_A	235_G	1.259	1.00
262_I	269_P	1.232	1.00
371_M	374_E	1.222	1.00
225_A	239_I	1.220	1.00
165_A	171_N	1.211	1.00
215_Y	251_E	1.211	1.00
289_A	319_R	1.203	1.00
257_F	261_E	1.201	1.00
381_F	386_F	1.198	1.00
229_A	239_I	1.192	1.00
371_M	375_S	1.191	1.00
37_T	117_F	1.190	1.00
194_V	217_A	1.188	1.00
352_C	359_V	1.187	1.00
322_P	357_I	1.185	1.00
83_P	86_R	1.183	1.00
97_L	100_H	1.174	1.00
60_M	64_A	1.172	1.00
293_K	297_A	1.169	1.00
126_L	150_W	1.153	1.00
20_I	76_E	1.151	1.00
181_D	188_I	1.149	1.00
194_V	220_K	1.148	1.00
75_V	81_Y	1.144	1.00
57_Q	106_L	1.142	1.00
88_G	144_I	1.138	1.00
88_G	92_M	1.133	1.00
232_L	396_S	1.133	1.00
61_I	98_R	1.131	1.00
338_S	341_R	1.131	1.00
181_D	186_R	1.130	1.00
92_M	96_D	1.129	1.00
273_I	301_S	1.128	1.00
236_D	271_Q	1.122	1.00
8_R	19_K	1.119	1.00
134_L	141_Y	1.117	1.00
185_R	374_E	1.111	1.00
228_M	231_A	1.104	1.00
179_I	240_S	1.098	1.00
335_V	345_I	1.098	1.00
201_P	204_I	1.094	1.00
255_V	259_L	1.094	1.00
182_P	370_W	1.093	1.00
64_A	102_R	1.092	1.00
259_L	263_K	1.086	1.00
47_F	50_L	1.086	1.00
245_P	279_S	1.085	1.00
367_P	370_W	1.083	1.00
14_D	62_Y	1.076	1.00
43_N	108_A	1.075	1.00
223_A	227_T	1.074	1.00
189_A	238_M	1.065	1.00
50_L	160_E	1.065	1.00
133_V	137_E	1.064	1.00
133_V	143_E	1.062	1.00
336_H	366_T	1.062	1.00
274_V	300_I	1.059	1.00
44_G	135_A	1.056	1.00
172_D	220_K	1.053	1.00
45_S	61_I	1.050	1.00
240_S	273_I	1.048	1.00
56_E	60_M	1.048	1.00
173_H	391_L	1.046	1.00
25_S	122_D	1.044	1.00
229_A	233_E	1.040	1.00
285_F	320_F	1.035	1.00
230_H	265_N	1.035	1.00
7_Y	18_K	1.033	1.00
202_S	329_Q	1.030	1.00
98_R	108_A	1.028	1.00
113_G	126_L	1.025	1.00
258_L	274_V	1.024	1.00
390_K	394_I	1.023	1.00
324_R	380_M	1.023	1.00
23_M	74_I	1.023	1.00
211_D	215_Y	1.022	1.00
350_K	354_S	1.020	1.00
258_L	295_L	1.018	1.00
163_S	208_Q	1.018	1.00
230_H	233_E	1.018	1.00
179_I	238_M	1.017	1.00
25_S	29_R	1.017	1.00
118_Q	144_I	1.016	1.00
347_A	354_S	1.013	1.00
255_V	291_A	1.012	1.00
42_F	131_T	1.007	1.00
255_V	294_S	1.005	1.00
159_K	207_G	1.001	1.00
191_E	242_N	0.992	1.00
44_G	52_E	0.992	1.00
226_F	272_I	0.989	1.00
216_T	219_L	0.986	1.00
27_A	38_G	0.985	1.00
23_M	27_A	0.977	1.00
294_S	297_A	0.975	1.00
392_N	396_S	0.975	1.00
168_P	216_T	0.968	1.00
372_W	375_S	0.968	1.00
343_A	354_S	0.965	1.00
225_A	241_I	0.962	1.00
7_Y	22_E	0.959	1.00
95_F	142_F	0.958	1.00
87_F	91_G	0.957	1.00
174_F	225_A	0.957	1.00
160_E	164_C	0.956	1.00
227_T	231_A	0.954	1.00
128_F	132_F	0.954	1.00
284_R	287_E	0.953	1.00
360_S	380_M	0.950	1.00
282_I	316_L	0.950	1.00
98_R	102_R	0.949	1.00
99_L	140_T	0.942	1.00
287_E	291_A	0.941	1.00
230_H	266_A	0.939	1.00
291_A	294_S	0.939	1.00
59_K	63_R	0.938	1.00
256_S	294_S	0.935	1.00
183_L	379_E	0.935	1.00
253_D	257_F	0.931	1.00
38_G	115_S	0.931	1.00
181_D	379_E	0.930	1.00
349_I	359_V	0.928	1.00
336_H	369_E	0.924	1.00
48_F	52_E	0.923	1.00
213_E	216_T	0.922	1.00
45_S	108_A	0.922	1.00
95_F	110_F	0.919	1.00
222_K	261_E	0.911	1.00
69_P	73_N	0.904	1.00
209_R	214_I	0.903	1.00
10_H	18_K	0.901	1.00
190_F	237_K	0.901	1.00
179_I	360_S	0.900	1.00
228_M	396_S	0.895	1.00
165_A	168_P	0.890	1.00
171_N	199_D	0.889	1.00
205_A	214_I	0.886	1.00
147_E	151_L	0.884	1.00
238_M	271_Q	0.883	1.00
19_K	22_E	0.881	1.00
192_A	239_I	0.880	1.00
256_S	260_N	0.876	1.00
158_D	162_D	0.875	1.00
170_I	223_A	0.875	1.00
91_G	142_F	0.870	1.00
170_I	220_K	0.870	1.00
91_G	95_F	0.866	1.00
251_E	257_F	0.866	1.00
68_D	93_E	0.862	1.00
261_E	264_A	0.861	1.00
364_V	373_L	0.859	1.00
164_C	213_E	0.857	1.00
166_L	172_D	0.852	1.00
91_G	112_K	0.851	1.00
349_I	353_T	0.849	1.00
49_Q	52_E	0.844	1.00
88_G	142_F	0.844	1.00
96_D	99_L	0.843	1.00
21_E	25_S	0.838	1.00
46_H	139_S	0.838	1.00
166_L	171_N	0.837	1.00
150_W	154_A	0.836	1.00
301_S	358_Q	0.835	1.00
174_F	194_V	0.834	1.00
174_F	192_A	0.832	1.00
68_D	97_L	0.832	1.00
226_F	267_L	0.831	1.00
120_T	124_R	0.831	1.00
194_V	204_I	0.829	1.00
183_L	374_E	0.828	1.00
107_Q	140_T	0.828	1.00
146_A	149_S	0.827	1.00
290_E	294_S	0.824	1.00
7_Y	19_K	0.822	1.00
129_F	149_S	0.822	1.00
164_C	216_T	0.822	1.00
178_P	387_A	0.818	1.00
22_E	26_I	0.815	1.00
47_F	160_E	0.815	1.00
289_A	321_Q	0.814	1.00
84_A	88_G	0.814	1.00
222_K	258_L	0.812	1.00
257_F	260_N	0.811	1.00
275_E	326_K	0.811	1.00
180_V	187_I	0.811	1.00
133_V	152_F	0.808	1.00
160_E	211_D	0.804	1.00
293_K	321_Q	0.804	1.00
231_A	392_N	0.802	1.00
333_T	369_E	0.801	1.00
49_Q	53_G	0.800	1.00
342_Q	346_Q	0.798	1.00
111_D	127_Q	0.797	1.00
192_A	225_A	0.795	1.00
114_T	144_I	0.787	1.00
90_A	93_E	0.786	1.00
176_F	192_A	0.784	1.00
208_Q	214_I	0.784	1.00
318_S	344_I	0.780	1.00
219_L	261_E	0.779	1.00
219_L	223_A	0.779	1.00
176_F	392_N	0.778	1.00
290_E	293_K	0.777	1.00
267_L	272_I	0.776	1.00
137_E	141_Y	0.772	1.00
82_A	86_R	0.771	1.00
233_E	236_D	0.769	1.00
176_F	190_F	0.767	1.00
364_V	370_W	0.766	1.00
215_Y	247_T	0.765	1.00
252_P	287_E	0.764	1.00
8_R	15_E	0.764	1.00
44_G	132_F	0.762	1.00
175_A	197_N	0.761	1.00
306_H	362_M	0.759	1.00
7_Y	15_E	0.758	1.00
145_P	150_W	0.758	1.00
81_Y	87_F	0.756	1.00
373_L	378_I	0.756	1.00
92_M	95_F	0.756	1.00
226_F	265_N	0.756	1.00
343_A	346_Q	0.755	1.00
160_E	207_G	0.754	1.00
319_R	340_P	0.753	1.00
334_N	337_K	0.753	1.00
350_K	353_T	0.753	1.00
52_E	135_A	0.751	1.00
178_P	390_K	0.750	1.00
254_A	258_L	0.749	1.00
211_D	214_I	0.748	1.00
231_A	234_L	0.747	1.00
67_Q	97_L	0.746	1.00
277_T	306_H	0.746	1.00
361_A	373_L	0.746	1.00
334_N	341_R	0.744	1.00
341_R	369_E	0.739	1.00
89_K	93_E	0.738	1.00
21_E	123_D	0.737	1.00
49_Q	132_F	0.737	1.00
20_I	24_V	0.737	1.00
287_E	290_E	0.734	1.00
185_R	370_W	0.730	1.00
262_I	265_N	0.727	1.00
85_R	88_G	0.726	1.00
48_F	58_V	0.724	1.00
307_F	348_I	0.723	1.00
109_V	139_S	0.722	1.00
11_I	52_E	0.721	1.00
339_G	342_Q	0.720	1.00
145_P	149_S	0.719	1.00
4_T	7_Y	0.719	1.00
163_S	172_D	0.718	1.00
353_T	359_V	0.717	1.00
111_D	130_R	0.716	1.00
200_S	203_A	0.714	1.00
76_E	79_C	0.713	1.00
167_S	220_K	0.713	1.00
138_Q	141_Y	0.711	1.00
104_D	165_A	0.711	1.00
384_D	388_K	0.711	1.00
248_L	291_A	0.709	1.00
112_K	142_F	0.705	1.00
42_F	127_Q	0.705	1.00
332_I	335_V	0.705	1.00
87_F	114_T	0.701	1.00
11_I	59_K	0.699	1.00
332_I	361_A	0.695	1.00
43_N	110_F	0.694	1.00
202_S	206_V	0.693	1.00
115_S	119_L	0.692	1.00
61_I	65_I	0.690	1.00
390_K	395_P	0.690	1.00
64_A	101_E	0.689	1.00
229_A	236_D	0.689	1.00
304_I	316_L	0.688	1.00
285_F	288_F	0.687	1.00
42_F	75_V	0.683	1.00
231_A	396_S	0.681	1.00
126_L	145_P	0.681	1.00
61_I	102_R	0.681	1.00
86_R	89_K	0.679	1.00
57_Q	102_R	0.679	1.00
19_K	74_I	0.677	1.00
185_R	367_P	0.675	1.00
365_A	384_D	0.674	1.00
214_I	246_M	0.670	1.00
285_F	289_A	0.669	1.00
148_D	151_L	0.668	1.00
17_V	21_E	0.667	1.00
91_G	110_F	0.667	1.00
178_P	187_I	0.665	1.00
163_S	166_L	0.665	1.00
237_K	271_Q	0.662	1.00
334_N	338_S	0.661	1.00
373_L	381_F	0.661	1.00
256_S	259_L	0.659	1.00
248_L	280_E	0.659	1.00
52_E	58_V	0.658	1.00
173_H	393_G	0.658	1.00
31_N	35_D	0.657	1.00
36_V	80_D	0.656	1.00
359_V	379_E	0.656	1.00
342_Q	376_A	0.654	1.00
44_G	48_F	0.654	1.00
162_D	196_K	0.652	1.00
318_S	338_S	0.652	1.00
47_F	210_K	0.651	1.00
301_S	324_R	0.649	1.00
151_L	155_D	0.648	1.00
172_D	196_K	0.646	1.00
113_G	127_Q	0.643	1.00
349_I	373_L	0.642	1.00
95_F	140_T	0.641	1.00
229_A	271_Q	0.640	1.00
272_I	300_I	0.637	1.00
30_R	80_D	0.636	1.00
242_N	305_D	0.635	1.00
18_K	21_E	0.635	1.00
255_V	298_A	0.635	1.00
222_K	241_I	0.633	1.00
27_A	30_R	0.632	1.00
278_E	308_G	0.631	1.00
190_F	239_I	0.628	1.00
46_H	107_Q	0.628	1.00
267_L	271_Q	0.626	1.00
148_D	152_F	0.622	1.00
28_N	115_S	0.622	1.00
39_I	81_Y	0.620	1.00
70_R	93_E	0.618	1.00
79_C	90_A	0.617	1.00
159_K	162_D	0.616	1.00
154_A	158_D	0.615	1.00
219_L	247_T	0.615	1.00
182_P	374_E	0.615	1.00
84_A	144_I	0.614	1.00
63_R	67_Q	0.613	1.00
316_L	319_R	0.613	1.00
180_V	185_R	0.613	1.00
327_I	378_I	0.613	1.00
343_A	347_A	0.612	1.00
208_Q	212_G	0.612	1.00
21_E	122_D	0.611	1.00
245_P	280_E	0.610	1.00
189_A	240_S	0.610	1.00
229_A	272_I	0.609	1.00
223_A	257_F	0.609	1.00
191_E	326_K	0.605	1.00
81_Y	86_R	0.603	1.00
292_I	321_Q	0.602	1.00
325_I	357_I	0.602	1.00
219_L	260_N	0.601	1.00
219_L	251_E	0.597	1.00
239_I	267_L	0.596	1.00
309_A	331_L	0.593	1.00
258_L	261_E	0.593	1.00
175_A	389_A	0.591	1.00
163_S	213_E	0.591	1.00
294_S	298_A	0.591	1.00
113_G	125_A	0.589	1.00
348_I	352_C	0.587	1.00
70_R	90_A	0.585	1.00
95_F	99_L	0.584	1.00
365_A	369_E	0.583	1.00
309_A	330_E	0.583	1.00
109_V	134_L	0.583	1.00
31_N	115_S	0.582	1.00
41_L	112_K	0.581	1.00
163_S	217_A	0.581	1.00
277_T	362_M	0.580	1.00
352_C	357_I	0.578	1.00
193_I	242_N	0.578	1.00
84_A	117_F	0.577	1.00
242_N	326_K	0.575	1.00
185_R	386_F	0.574	1.00
68_D	94_L	0.574	1.00
240_S	324_R	0.573	1.00
53_G	132_F	0.572	1.00
162_D	199_D	0.572	1.00
219_L	253_D	0.571	1.00
152_F	156_G	0.571	1.00
75_V	82_A	0.570	1.00
286_D	319_R	0.570	1.00
253_D	256_S	0.567	1.00
393_G	396_S	0.567	1.00
339_G	343_A	0.566	1.00
15_E	74_I	0.565	1.00
87_F	112_K	0.562	1.00
232_L	395_P	0.561	1.00
229_A	265_N	0.560	1.00
282_I	285_F	0.560	1.00
351_C	355_L	0.559	1.00
151_L	154_A	0.558	1.00
347_A	351_C	0.558	1.00
162_D	165_A	0.557	1.00
302_V	323_D	0.557	1.00
46_H	140_T	0.557	1.00
230_H	267_L	0.556	1.00
291_A	295_L	0.555	1.00
97_L	101_E	0.554	1.00
90_A	94_L	0.553	1.00
187_I	387_A	0.553	1.00
191_E	305_D	0.551	1.00
260_N	263_K	0.551	1.00
295_L	300_I	0.551	1.00
222_K	257_F	0.550	1.00
258_L	300_I	0.549	1.00
159_K	196_K	0.548	1.00
222_K	226_F	0.547	1.00
218_D	221_S	0.547	1.00
189_A	237_K	0.546	1.00
31_N	38_G	0.545	1.00
173_H	224_L	0.544	1.00
64_A	97_L	0.544	1.00
12_R	58_V	0.543	1.00
215_Y	219_L	0.543	1.00
157_S	161_L	0.541	1.00
95_F	108_A	0.540	1.00
316_L	320_F	0.539	1.00
51_L	57_Q	0.538	1.00
386_F	389_A	0.537	1.00
254_A	257_F	0.536	1.00
274_V	302_V	0.536	1.00
26_I	30_R	0.535	1.00
153_I	157_S	0.534	1.00
222_K	243_L	0.533	1.00
115_S	125_A	0.533	1.00
24_V	38_G	0.533	1.00
209_R	279_S	0.532	1.00
368_E	371_M	0.529	1.00
212_G	246_M	0.529	1.00
59_K	62_Y	0.528	1.00
119_L	124_R	0.528	1.00
209_R	244_L	0.526	1.00
332_I	345_I	0.525	1.00
286_D	290_E	0.525	1.00
270_E	301_S	0.525	1.00
247_T	254_A	0.524	1.00
269_P	300_I	0.524	1.00
163_S	196_K	0.523	1.00
24_V	28_N	0.523	1.00
285_F	319_R	0.523	1.00
335_V	342_Q	0.522	1.00
96_D	100_H	0.521	1.00
152_F	155_D	0.521	1.00
155_D	159_K	0.520	1.00
318_S	340_P	0.519	1.00
243_L	247_T	0.518	1.00
170_I	227_T	0.517	1.00
344_I	348_I	0.517	1.00
324_R	357_I	0.516	1.00
11_I	58_V	0.515	1.00
30_R	79_C	0.514	1.00
164_C	168_P	0.512	1.00
336_H	339_G	0.510	1.00
293_K	296_K	0.510	1.00
129_F	150_W	0.509	1.00
262_I	267_L	0.507	1.00
17_V	128_F	0.507	1.00
314_L	348_I	0.507	1.00
92_M	142_F	0.506	1.00
282_I	288_F	0.505	1.00
226_F	262_I	0.501	1.00
335_V	373_L	0.501	1.00
50_L	156_G	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4rnhA	2	0.9628	100	0.118	Contact Map
4j40A	2	0.6055	100	0.14	Contact Map
3pjxA	1	0.9429	100	0.159	Contact Map
3gfzA	2	0.9181	100	0.23	Contact Map
4hjfA	1	0.6203	100	0.269	Contact Map
4hu4A	1	0.5856	100	0.347	Contact Map
2r6oA	2	0.6129	100	0.348	Contact Map
4rniA	2	0.6104	100	0.353	Contact Map
4kieA	1	0.6278	100	0.357	Contact Map
3sy8A	6	0.9057	100	0.382	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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