PGAC - ECOLI - GREMLIN Contacts

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PGAC - Poly-beta-1,6-N-acetyl-D-glucosamine synthase

UniProt:	P75905	Sequences: MINRIVSFFILCLVLCIPLCVAYFHSGELMMRFVFFWPFFMSIMWIVGGVYFWVYRERHWPWGENAPAPQLKDNPSISIIIPCFNEEKNVEETIHAALAQRYENIEVIAVNDGSTDKTRAILDRMAAQIPHLRVIHLAQNQGKAIALKTGAAAAKSEYLVCIDGDALLDRDAAAYIVEPMLYNPRVGAVTGNPRIRTRSTLVGKIQVGEYSSIIGLIKRTQRIYGNVFTVSGVIAAFRRSALAEVGYWSDDMITEDIDISWKLQLNQWTIFYEPRALCWILMPETLKGLWKQRLRWAQGGAEVFLKNMTRLWRKENFRMWPLFFEYCLTTIWAFTCLVGFIIYAVQLAGVPLNIELTHIAATHTAGILLCTLCLLQFIVSLMIENRYEHNLTSSLFWIIWFPVIFWMLSLATTLVSFTRVMLMPKKQRARWVSPDRGILRG	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13863
Length:	441 (385)
Sequences:	10178 (7573)
Seq/√Len:	385.9

ECOLI - PGAC YAIP BCSA ARNC GTRB
BACSU - YDAM CSBB YKOT YKCC
HALSA - Q9HSB1 Q9HQQ6
SULSO - Q7LXY2 Q97YM4 Q97W52 Q97UK7 Q97TY0 Q97WK7

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
101_R	174_A	4.947	1.00
87_E	117_K	4.757	1.00
239_R	243_A	4.503	1.00
158_Y	177_V	3.506	1.00
78_S	156_S	3.428	1.00
106_E	133_R	3.345	1.00
160_V	236_A	3.282	1.00
111_N	136_H	3.279	1.00
80_I	110_V	3.115	1.00
110_V	150_G	2.996	1.00
241_A	268_W	2.974	1.00
119_R	123_D	2.970	1.00
78_S	106_E	2.939	1.00
175_Y	275_R	2.910	1.00
158_Y	180_M	2.899	1.00
117_K	120_A	2.825	1.00
244_E	266_N	2.800	1.00
120_A	124_R	2.692	1.00
106_E	156_S	2.679	1.00
77_I	177_V	2.532	1.00
186_V	271_F	2.494	1.00
179_P	273_E	2.465	1.00
285_T	288_G	2.455	1.00
200_T	203_G	2.403	1.00
171_D	175_Y	2.335	1.00
158_Y	236_A	2.298	1.00
91_E	124_R	2.289	1.00
81_I	97_A	2.248	1.00
180_M	236_A	2.248	1.00
330_T	333_A	2.196	1.00
101_R	171_D	2.178	1.00
76_S	157_E	2.153	1.00
316_N	320_W	2.130	1.00
122_L	134_V	2.112	1.00
77_I	173_A	2.103	1.00
185_R	269_T	2.101	1.00
111_N	114_S	2.096	1.00
76_S	156_S	2.080	1.00
183_N	269_T	2.031	1.00
78_S	154_A	2.004	1.00
176_I	236_A	1.998	1.00
91_E	95_H	1.970	1.00
187_G	268_W	1.970	1.00
240_S	244_E	1.950	1.00
78_S	108_I	1.938	1.00
244_E	268_W	1.883	1.00
241_A	263_L	1.854	1.00
315_E	319_M	1.843	1.00
230_V	235_A	1.835	1.00
76_S	155_K	1.831	1.00
399_I	402_P	1.824	1.00
160_V	173_A	1.821	1.00
329_T	333_A	1.800	1.00
38_P	42_S	1.784	1.00
292_Q	296_W	1.762	1.00
91_E	121_I	1.732	1.00
42_S	45_W	1.730	1.00
76_S	104_N	1.682	1.00
369_L	373_C	1.656	1.00
106_E	155_K	1.639	1.00
409_S	412_T	1.634	1.00
48_G	51_Y	1.603	1.00
158_Y	238_R	1.600	1.00
416_S	419_R	1.599	1.00
76_S	106_E	1.593	1.00
75_P	177_V	1.571	1.00
74_N	103_E	1.563	1.00
209_E	293_R	1.561	1.00
188_A	270_I	1.552	1.00
95_H	125_M	1.528	1.00
75_P	102_Y	1.524	1.00
101_R	170_R	1.515	1.00
151_A	159_L	1.508	1.00
45_W	48_G	1.507	1.00
48_G	52_F	1.493	1.00
45_W	49_G	1.486	1.00
379_V	383_I	1.462	1.00
258_D	262_K	1.460	1.00
96_A	168_L	1.454	1.00
154_A	239_R	1.441	1.00
123_D	126_A	1.435	1.00
367_I	370_C	1.430	1.00
120_A	123_D	1.410	1.00
122_L	126_A	1.403	1.00
109_A	122_L	1.398	1.00
42_S	46_I	1.393	1.00
150_G	154_A	1.377	1.00
254_T	299_G	1.374	1.00
317_F	321_P	1.366	1.00
108_I	133_R	1.364	1.00
323_F	326_Y	1.345	1.00
159_L	239_R	1.342	1.00
369_L	372_L	1.340	1.00
376_Q	383_I	1.339	1.00
322_L	325_E	1.325	1.00
315_E	320_W	1.305	1.00
110_V	146_A	1.299	1.00
315_E	321_P	1.297	1.00
166_A	278_C	1.295	1.00
44_M	48_G	1.294	1.00
316_N	319_M	1.293	1.00
365_A	369_L	1.292	1.00
85_N	114_S	1.292	1.00
143_K	147_L	1.287	1.00
415_V	418_T	1.285	1.00
86_E	164_G	1.282	1.00
159_L	242_L	1.278	1.00
330_T	334_F	1.275	1.00
52_F	55_Y	1.270	1.00
96_A	167_L	1.268	1.00
318_R	321_P	1.265	1.00
123_D	136_H	1.264	1.00
372_L	376_Q	1.264	1.00
100_Q	173_A	1.260	1.00
394_S	401_F	1.257	1.00
94_I	125_M	1.255	1.00
408_L	411_A	1.245	1.00
79_I	160_V	1.245	1.00
121_I	124_R	1.242	1.00
343_Y	346_Q	1.234	1.00
350_V	353_N	1.222	1.00
373_C	376_Q	1.214	1.00
412_T	416_S	1.209	1.00
102_Y	177_V	1.200	1.00
172_A	234_I	1.199	1.00
51_Y	55_Y	1.197	1.00
34_V	38_P	1.197	1.00
317_F	320_W	1.195	1.00
329_T	332_W	1.193	1.00
83_C	118_T	1.193	1.00
292_Q	295_R	1.185	1.00
97_A	107_V	1.176	1.00
339_G	343_Y	1.174	1.00
370_C	373_C	1.173	1.00
119_R	136_H	1.166	1.00
47_V	55_Y	1.160	1.00
99_A	170_R	1.159	1.00
39_F	42_S	1.155	1.00
175_Y	178_E	1.153	1.00
45_W	52_F	1.150	1.00
149_T	153_A	1.144	1.00
315_E	318_R	1.143	1.00
369_L	376_Q	1.140	1.00
32_R	36_F	1.135	1.00
168_L	172_A	1.133	1.00
135_I	149_T	1.132	1.00
36_F	40_F	1.126	1.00
51_Y	54_V	1.122	1.00
42_S	52_F	1.121	1.00
280_I	283_P	1.115	1.00
416_S	420_V	1.110	1.00
322_L	326_Y	1.105	1.00
380_S	385_N	1.097	1.00
397_W	401_F	1.094	1.00
45_W	56_R	1.093	1.00
188_A	263_L	1.087	1.00
111_N	119_R	1.084	1.00
197_T	203_G	1.081	1.00
83_C	90_V	1.078	1.00
299_G	302_E	1.074	1.00
78_S	239_R	1.074	1.00
32_R	39_F	1.073	1.00
407_M	411_A	1.070	1.00
190_T	193_P	1.067	1.00
380_S	383_I	1.067	1.00
187_G	238_R	1.066	1.00
135_I	153_A	1.066	1.00
195_I	282_M	1.065	1.00
105_I	173_A	1.060	1.00
49_G	52_F	1.057	1.00
40_F	44_M	1.057	1.00
33_F	37_W	1.052	1.00
383_I	386_R	1.051	1.00
97_A	168_L	1.048	1.00
41_M	45_W	1.043	1.00
342_I	346_Q	1.043	1.00
46_I	50_V	1.042	1.00
193_P	233_V	1.042	1.00
410_L	416_S	1.040	1.00
95_H	99_A	1.040	1.00
245_V	263_L	1.040	1.00
45_W	53_W	1.039	1.00
112_D	140_N	1.038	1.00
346_Q	350_V	1.037	1.00
98_L	129_I	1.036	1.00
162_I	168_L	1.036	1.00
406_W	410_L	1.029	1.00
149_T	152_A	1.028	1.00
376_Q	379_V	1.027	1.00
48_G	55_Y	1.025	1.00
74_N	174_A	1.023	1.00
345_V	349_G	1.017	1.00
320_W	323_F	1.016	1.00
333_A	337_L	1.015	1.00
106_E	154_A	1.014	1.00
147_L	161_C	1.013	1.00
90_V	109_A	1.011	1.00
35_F	39_F	1.004	1.00
394_S	397_W	1.001	1.00
117_K	121_I	0.998	1.00
381_L	384_E	0.997	1.00
156_S	239_R	0.997	1.00
147_L	248_W	0.997	1.00
319_M	323_F	0.996	1.00
376_Q	380_S	0.994	1.00
188_A	230_V	0.984	1.00
121_I	125_M	0.979	1.00
293_R	296_W	0.979	1.00
48_G	58_R	0.978	1.00
248_W	251_D	0.975	1.00
122_L	125_M	0.974	1.00
200_T	204_K	0.974	1.00
42_S	49_G	0.972	1.00
218_K	221_Q	0.971	1.00
303_V	307_N	0.969	1.00
400_W	404_I	0.969	1.00
247_Y	251_D	0.964	1.00
114_S	118_T	0.963	1.00
47_V	50_V	0.962	1.00
71_L	74_N	0.953	1.00
412_T	419_R	0.951	1.00
396_F	399_I	0.949	1.00
52_F	56_R	0.946	1.00
90_V	94_I	0.946	1.00
336_C	339_G	0.944	1.00
169_D	279_W	0.943	1.00
55_Y	58_R	0.943	1.00
43_I	47_V	0.941	1.00
85_N	115_T	0.939	1.00
402_P	406_W	0.936	1.00
415_V	419_R	0.935	1.00
49_G	53_W	0.931	1.00
411_A	414_L	0.928	1.00
399_I	403_V	0.927	1.00
393_S	396_F	0.924	1.00
157_E	240_S	0.922	1.00
148_K	152_A	0.919	1.00
366_G	369_L	0.913	1.00
32_R	38_P	0.912	1.00
176_I	191_G	0.911	1.00
326_Y	330_T	0.911	1.00
408_L	412_T	0.909	1.00
98_L	131_H	0.905	1.00
346_Q	349_G	0.900	1.00
299_G	303_V	0.898	1.00
48_G	56_R	0.898	1.00
406_W	409_S	0.895	1.00
201_L	204_K	0.895	1.00
49_G	56_R	0.894	1.00
176_I	189_V	0.893	1.00
151_A	154_A	0.892	1.00
381_L	385_N	0.890	1.00
37_W	41_M	0.887	1.00
126_A	129_I	0.886	1.00
92_E	95_H	0.886	1.00
325_E	329_T	0.883	1.00
131_H	136_H	0.882	1.00
102_Y	105_I	0.882	1.00
372_L	375_L	0.881	1.00
38_P	45_W	0.877	1.00
133_R	136_H	0.870	1.00
379_V	382_M	0.869	1.00
397_W	402_P	0.865	1.00
343_Y	350_V	0.860	1.00
211_S	214_I	0.859	1.00
84_F	140_N	0.858	1.00
35_F	42_S	0.857	1.00
32_R	35_F	0.857	1.00
38_P	48_G	0.856	1.00
392_T	396_F	0.856	1.00
93_T	97_A	0.855	1.00
219_R	274_P	0.853	1.00
372_L	380_S	0.851	1.00
380_S	384_E	0.850	1.00
409_S	413_T	0.849	1.00
398_I	402_P	0.847	1.00
137_L	149_T	0.846	1.00
90_V	118_T	0.844	1.00
166_A	280_I	0.833	1.00
52_F	59_H	0.831	1.00
79_I	105_I	0.830	1.00
80_I	150_G	0.826	1.00
179_P	271_F	0.819	1.00
41_M	48_G	0.818	1.00
108_I	154_A	0.818	1.00
44_M	52_F	0.812	1.00
316_N	321_P	0.812	1.00
333_A	336_C	0.812	1.00
289_L	293_R	0.808	1.00
289_L	292_Q	0.807	1.00
332_W	336_C	0.807	1.00
395_L	399_I	0.805	1.00
125_M	129_I	0.801	1.00
410_L	413_T	0.801	1.00
38_P	47_V	0.800	1.00
412_T	415_V	0.797	1.00
187_G	241_A	0.797	1.00
407_M	410_L	0.793	1.00
134_V	137_L	0.793	1.00
74_N	104_N	0.792	1.00
413_T	416_S	0.791	1.00
39_F	43_I	0.789	1.00
408_L	419_R	0.785	1.00
42_S	53_W	0.783	1.00
36_F	39_F	0.782	1.00
340_F	343_Y	0.782	1.00
43_I	53_W	0.782	1.00
54_V	57_E	0.781	1.00
234_I	278_C	0.780	1.00
189_V	273_E	0.780	1.00
238_R	268_W	0.778	1.00
70_Q	73_D	0.773	1.00
347_L	350_V	0.773	1.00
260_S	270_I	0.773	1.00
240_S	243_A	0.771	1.00
368_L	376_Q	0.770	1.00
392_T	398_I	0.770	1.00
52_F	57_E	0.768	1.00
309_T	313_R	0.761	1.00
206_Q	209_E	0.759	1.00
135_I	150_G	0.759	1.00
35_F	38_P	0.758	1.00
187_G	263_L	0.755	1.00
401_F	404_I	0.755	1.00
43_I	54_V	0.752	1.00
326_Y	329_T	0.750	1.00
35_F	41_M	0.749	1.00
116_D	120_A	0.748	1.00
144_A	147_L	0.747	1.00
56_R	59_H	0.747	1.00
53_W	57_E	0.745	1.00
373_C	377_F	0.743	1.00
406_W	412_T	0.743	1.00
249_S	253_I	0.742	1.00
46_I	49_G	0.740	1.00
206_Q	210_Y	0.739	1.00
336_C	340_F	0.736	1.00
144_A	148_K	0.735	1.00
409_S	416_S	0.735	1.00
53_W	56_R	0.732	1.00
45_W	55_Y	0.732	1.00
414_L	418_T	0.732	1.00
383_I	387_Y	0.731	1.00
38_P	41_M	0.731	1.00
167_L	196_R	0.729	1.00
119_R	134_V	0.728	1.00
47_V	52_F	0.728	1.00
393_S	401_F	0.725	1.00
132_L	137_L	0.723	1.00
160_V	172_A	0.722	1.00
38_P	55_Y	0.722	1.00
34_V	45_W	0.722	1.00
131_H	137_L	0.722	1.00
391_L	395_L	0.721	1.00
35_F	46_I	0.716	1.00
373_C	380_S	0.716	1.00
298_Q	302_E	0.709	1.00
79_I	100_Q	0.708	1.00
43_I	48_G	0.707	1.00
376_Q	381_L	0.704	1.00
37_W	52_F	0.704	1.00
202_V	205_I	0.703	1.00
377_F	380_S	0.703	1.00
151_A	161_C	0.702	1.00
43_I	51_Y	0.700	1.00
42_S	48_G	0.694	0.99
343_Y	349_G	0.694	0.99
73_D	104_N	0.693	0.99
408_L	416_S	0.691	0.99
250_D	253_I	0.689	0.99
119_R	122_L	0.689	0.99
44_M	55_Y	0.688	0.99
49_G	55_Y	0.682	0.99
394_S	400_W	0.678	0.99
37_W	40_F	0.678	0.99
143_K	232_G	0.678	0.99
38_P	49_G	0.676	0.99
43_I	49_G	0.676	0.99
374_L	378_I	0.674	0.99
397_W	400_W	0.673	0.99
310_R	313_R	0.672	0.99
41_M	51_Y	0.672	0.99
180_M	186_V	0.672	0.99
368_L	371_T	0.672	0.99
375_L	382_M	0.671	0.99
38_P	52_F	0.671	0.99
311_L	314_K	0.669	0.99
247_Y	250_D	0.668	0.99
160_V	176_I	0.666	0.99
319_M	322_L	0.665	0.99
319_M	325_E	0.664	0.99
108_I	150_G	0.662	0.99
380_S	387_Y	0.661	0.99
34_V	42_S	0.660	0.99
249_S	252_M	0.659	0.99
44_M	51_Y	0.658	0.99
330_T	337_L	0.657	0.99
263_L	268_W	0.657	0.99
54_V	58_R	0.654	0.99
39_F	50_V	0.653	0.99
148_K	151_A	0.651	0.99
328_L	332_W	0.645	0.99
115_T	118_T	0.644	0.99
375_L	384_E	0.642	0.99
83_C	164_G	0.640	0.99
364_T	369_L	0.639	0.99
192_N	195_I	0.638	0.99
417_F	420_V	0.636	0.99
329_T	340_F	0.635	0.99
93_T	96_A	0.633	0.99
410_L	419_R	0.633	0.99
411_A	416_S	0.631	0.99
47_V	51_Y	0.629	0.99
49_G	57_E	0.627	0.99
96_A	100_Q	0.627	0.99
415_V	420_V	0.626	0.99
390_N	393_S	0.624	0.99
107_V	132_L	0.623	0.99
35_F	48_G	0.621	0.99
45_W	51_Y	0.620	0.99
320_W	324_F	0.619	0.99
74_N	102_Y	0.618	0.99
406_W	416_S	0.617	0.99
38_P	46_I	0.616	0.99
34_V	44_M	0.614	0.99
171_D	174_A	0.610	0.99
43_I	46_I	0.610	0.99
75_P	157_E	0.608	0.99
47_V	56_R	0.608	0.99
255_E	299_G	0.606	0.99
283_P	292_Q	0.606	0.99
289_L	296_W	0.605	0.99
409_S	419_R	0.603	0.99
407_M	412_T	0.599	0.98
317_F	323_F	0.599	0.98
100_Q	168_L	0.599	0.98
191_G	276_A	0.598	0.98
118_T	122_L	0.598	0.98
354_I	358_H	0.597	0.98
38_P	53_W	0.597	0.98
377_F	383_I	0.596	0.98
413_T	418_T	0.595	0.98
394_S	403_V	0.594	0.98
255_E	258_D	0.593	0.98
248_W	252_M	0.590	0.98
141_Q	145_I	0.590	0.98
213_I	218_K	0.590	0.98
131_H	134_V	0.589	0.98
238_R	241_A	0.587	0.98
376_Q	384_E	0.586	0.98
371_T	375_L	0.585	0.98
133_R	137_L	0.585	0.98
348_A	351_P	0.584	0.98
326_Y	333_A	0.582	0.98
365_A	368_L	0.582	0.98
365_A	372_L	0.582	0.98
390_N	401_F	0.581	0.98
32_R	40_F	0.581	0.98
403_V	407_M	0.581	0.98
186_V	189_V	0.581	0.98
34_V	41_M	0.580	0.98
173_A	236_A	0.579	0.98
364_T	367_I	0.579	0.98
35_F	49_G	0.579	0.98
94_I	122_L	0.576	0.98
32_R	56_R	0.574	0.98
97_A	162_I	0.573	0.98
133_R	138_A	0.573	0.98
169_D	277_L	0.571	0.98
44_M	56_R	0.570	0.98
90_V	122_L	0.570	0.98
248_W	253_I	0.569	0.98
381_L	386_R	0.569	0.98
38_P	44_M	0.568	0.98
237_F	263_L	0.568	0.98
190_T	230_V	0.567	0.98
323_F	327_C	0.567	0.98
215_G	219_R	0.567	0.98
136_H	139_Q	0.566	0.98
217_I	220_T	0.566	0.98
214_I	217_I	0.565	0.98
232_G	256_D	0.564	0.98
253_I	302_E	0.564	0.98
43_I	58_R	0.564	0.98
175_Y	273_E	0.563	0.98
50_V	54_V	0.558	0.98
87_E	118_T	0.558	0.98
249_S	306_K	0.557	0.98
329_T	335_T	0.557	0.98
132_L	135_I	0.556	0.98
179_P	189_V	0.555	0.98
294_L	298_Q	0.555	0.98
166_A	233_V	0.555	0.98
191_G	234_I	0.554	0.98
343_Y	347_L	0.553	0.97
328_L	334_F	0.553	0.97
97_A	100_Q	0.553	0.97
85_N	111_N	0.553	0.97
393_S	397_W	0.552	0.97
93_T	98_L	0.551	0.97
121_I	126_A	0.551	0.97
32_R	43_I	0.550	0.97
253_I	299_G	0.549	0.97
392_T	395_L	0.548	0.97
390_N	394_S	0.548	0.97
352_L	355_E	0.546	0.97
280_I	292_Q	0.545	0.97
330_T	335_T	0.545	0.97
411_A	418_T	0.544	0.97
40_F	55_Y	0.543	0.97
329_T	336_C	0.542	0.97
328_L	336_C	0.540	0.97
42_S	51_Y	0.539	0.97
45_W	50_V	0.539	0.97
85_N	116_D	0.538	0.97
77_I	158_Y	0.538	0.97
143_K	255_E	0.538	0.97
42_S	55_Y	0.538	0.97
44_M	50_V	0.538	0.97
111_N	165_D	0.538	0.97
396_F	400_W	0.537	0.97
365_A	376_Q	0.537	0.97
38_P	54_V	0.536	0.97
378_I	384_E	0.534	0.97
395_L	402_P	0.533	0.97
192_N	272_Y	0.532	0.97
46_I	54_V	0.531	0.97
283_P	296_W	0.530	0.97
43_I	50_V	0.530	0.97
392_T	397_W	0.528	0.97
409_S	418_T	0.526	0.97
190_T	195_I	0.525	0.97
332_W	340_F	0.525	0.97
40_F	43_I	0.525	0.97
241_A	244_E	0.525	0.97
112_D	137_L	0.525	0.97
210_Y	231_S	0.523	0.96
400_W	403_V	0.522	0.96
345_V	348_A	0.521	0.96
371_T	376_Q	0.520	0.96
328_L	333_A	0.520	0.96
382_M	387_Y	0.520	0.96
193_P	210_Y	0.520	0.96
118_T	121_I	0.520	0.96
41_M	52_F	0.519	0.96
98_L	132_L	0.518	0.96
337_L	340_F	0.518	0.96
396_F	401_F	0.517	0.96
378_I	381_L	0.517	0.96
249_S	262_K	0.516	0.96
247_Y	253_I	0.516	0.96
176_I	234_I	0.516	0.96
398_I	401_F	0.515	0.96
40_F	51_Y	0.515	0.96
161_C	230_V	0.514	0.96
210_Y	214_I	0.514	0.96
80_I	151_A	0.513	0.96
346_Q	353_N	0.513	0.96
296_W	299_G	0.512	0.96
410_L	415_V	0.511	0.96
44_M	53_W	0.509	0.96
245_V	262_K	0.509	0.96
34_V	43_I	0.508	0.96
372_L	379_V	0.508	0.96
264_Q	270_I	0.508	0.96
229_T	257_I	0.508	0.96
210_Y	221_Q	0.507	0.96
93_T	162_I	0.507	0.96
316_N	322_L	0.505	0.96
394_S	398_I	0.504	0.96
329_T	334_F	0.504	0.96
79_I	173_A	0.503	0.96
373_C	383_I	0.503	0.96
38_P	56_R	0.502	0.96
348_A	352_L	0.502	0.96
222_R	271_F	0.502	0.96
87_E	121_I	0.501	0.96
36_F	48_G	0.500	0.95

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4p02A	1	0.9478	100	0.343	Contact Map
2z86A	2	0.6916	100	0.555	Contact Map
1qg8A	1	0.4898	100	0.571	Contact Map
1xhbA	1	0.8163	100	0.572	Contact Map
3bcvA	2	0.4104	100	0.575	Contact Map
2bo4A	4	0.7619	100	0.595	Contact Map
5ajoA	1	0.8073	100	0.596	Contact Map
2d7iA	1	0.9116	100	0.598	Contact Map
3ckjA	2	0.6372	100	0.6	Contact Map
3l7iA	4	0.1451	100	0.602	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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