RUTG - ECOLI - GREMLIN Contacts

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RUTG - Putative pyrimidine permease RutG

UniProt:	P75892	Sequences: MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRKLVDVPPPEVVHQEP	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13853
Length:	442 (390)
Sequences:	4337 (2256)
Seq/√Len:	114.3

ECOLI - RUTG UACT URAA XANQ XANP YBBY
BACSU - PYRP PBUX PUCK PUCJ YWDJ

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
178_M	209_L	5.302	1.00
182_C	205_V	5.221	1.00
117_I	297_G	4.826	1.00
166_V	176_A	4.414	1.00
153_A	414_A	4.120	1.00
233_W	340_K	3.830	1.00
183_I	202_G	3.826	1.00
63_L	336_G	3.670	1.00
122_V	253_A	3.467	1.00
208_L	216_V	3.289	1.00
110_S	243_A	3.179	1.00
226_T	230_H	3.103	1.00
186_V	201_V	3.064	1.00
394_L	417_G	3.062	1.00
175_M	210_Y	3.039	1.00
175_M	222_A	2.936	1.00
225_F	228_V	2.806	1.00
66_G	333_M	2.779	1.00
391_T	418_A	2.721	1.00
114_G	244_F	2.680	1.00
118_A	249_M	2.664	1.00
111_I	243_A	2.660	1.00
178_M	205_V	2.621	1.00
211_G	216_V	2.578	1.00
231_A	340_K	2.510	1.00
383_G	426_S	2.452	1.00
108_N	111_I	2.418	1.00
267_L	285_A	2.403	1.00
68_G	292_A	2.396	1.00
180_V	359_V	2.373	1.00
36_G	327_A	2.355	1.00
40_A	331_I	2.348	1.00
207_C	223_V	2.268	1.00
174_W	178_M	2.216	1.00
178_M	182_C	2.207	1.00
33_A	331_I	2.207	1.00
117_I	294_M	2.189	1.00
64_M	299_V	2.151	1.00
121_L	125_V	2.126	1.00
204_I	208_L	2.117	1.00
79_R	279_D	2.091	1.00
70_L	329_A	2.068	1.00
175_M	217_L	2.061	1.00
228_V	344_L	2.056	1.00
229_S	232_A	2.054	1.00
32_T	327_A	2.044	1.00
420_L	424_L	2.026	1.00
141_L	423_A	2.022	1.00
70_L	326_V	2.007	1.00
182_C	209_L	1.996	1.00
117_I	242_P	1.984	1.00
208_L	211_G	1.975	1.00
182_C	186_V	1.972	1.00
73_F	326_V	1.972	1.00
319_V	324_V	1.972	1.00
124_T	287_V	1.968	1.00
183_I	356_A	1.940	1.00
54_M	94_V	1.866	1.00
127_G	287_V	1.836	1.00
227_L	347_T	1.813	1.00
63_L	333_M	1.813	1.00
207_C	347_T	1.795	1.00
156_L	365_A	1.781	1.00
24_D	276_R	1.766	1.00
124_T	294_M	1.745	1.00
185_L	189_F	1.741	1.00
94_V	112_A	1.732	1.00
165_S	350_A	1.730	1.00
231_A	343_A	1.718	1.00
116_I	297_G	1.701	1.00
143_P	422_N	1.698	1.00
121_L	294_M	1.694	1.00
226_T	229_S	1.693	1.00
228_V	231_A	1.669	1.00
186_V	190_T	1.652	1.00
126_I	260_V	1.636	1.00
193_M	197_L	1.630	1.00
40_A	328_A	1.594	1.00
65_S	83_Y	1.549	1.00
281_Y	284_R	1.539	1.00
387_M	421_L	1.539	1.00
26_R	323_L	1.533	1.00
330_V	334_L	1.530	1.00
180_V	390_V	1.529	1.00
190_T	194_I	1.522	1.00
174_W	177_V	1.518	1.00
120_G	294_M	1.507	1.00
391_T	417_G	1.504	1.00
245_N	248_A	1.499	1.00
206_A	352_V	1.467	1.00
394_L	413_T	1.457	1.00
22_A	276_R	1.447	1.00
401_L	404_G	1.435	1.00
276_R	281_Y	1.402	1.00
124_T	291_L	1.399	1.00
209_L	216_V	1.395	1.00
177_V	181_L	1.390	1.00
95_I	98_T	1.386	1.00
70_L	73_F	1.381	1.00
190_T	195_Q	1.381	1.00
39_H	310_N	1.360	1.00
194_I	201_V	1.356	1.00
111_I	245_N	1.346	1.00
416_F	420_L	1.340	1.00
145_V	388_V	1.330	1.00
120_G	293_T	1.319	1.00
209_L	217_L	1.316	1.00
181_L	185_L	1.310	1.00
244_F	249_M	1.299	1.00
404_G	408_L	1.296	0.99
390_V	417_G	1.292	0.99
227_L	230_H	1.291	0.99
120_G	290_G	1.286	0.99
114_G	118_A	1.286	0.99
21_V	25_E	1.286	0.99
340_K	343_A	1.283	0.99
74_F	326_V	1.277	0.99
22_A	25_E	1.271	0.99
30_A	34_V	1.266	0.99
314_M	320_Y	1.263	0.99
97_A	248_A	1.259	0.99
216_V	222_A	1.257	0.99
91_V	95_I	1.254	0.99
101_N	245_N	1.251	0.99
69_T	83_Y	1.249	0.99
67_I	333_M	1.245	0.99
124_T	290_G	1.230	0.99
211_G	225_F	1.227	0.99
73_F	325_F	1.226	0.99
70_L	333_M	1.225	0.99
270_V	314_M	1.224	0.99
98_T	112_A	1.215	0.99
377_V	384_N	1.209	0.99
205_V	209_L	1.204	0.99
43_M	47_T	1.202	0.99
201_V	205_V	1.189	0.99
238_H	300_G	1.183	0.99
63_L	299_V	1.182	0.99
197_L	201_V	1.173	0.99
217_L	222_A	1.171	0.99
153_A	395_G	1.163	0.99
379_L	388_V	1.158	0.99
266_H	308_A	1.157	0.99
82_S	270_V	1.154	0.99
403_L	407_T	1.146	0.99
271_A	278_M	1.145	0.99
76_T	291_L	1.120	0.99
123_Y	259_L	1.118	0.98
174_W	217_L	1.117	0.98
97_A	252_I	1.117	0.98
131_M	283_G	1.115	0.98
263_N	267_L	1.110	0.98
87_S	259_L	1.109	0.98
77_G	284_R	1.102	0.98
338_S	342_G	1.100	0.98
145_V	149_A	1.096	0.98
85_G	307_Y	1.091	0.98
163_V	397_G	1.091	0.98
403_L	406_F	1.090	0.98
398_D	401_L	1.085	0.98
235_G	339_P	1.075	0.98
27_L	32_T	1.069	0.98
89_A	259_L	1.069	0.98
21_V	27_L	1.066	0.98
84_L	306_T	1.059	0.98
267_L	289_D	1.058	0.98
27_L	321_S	1.051	0.98
93_V	255_V	1.046	0.98
117_I	298_S	1.044	0.98
266_H	311_I	1.043	0.98
272_G	376_R	1.020	0.97
178_M	217_L	1.018	0.97
262_E	305_T	1.016	0.97
162_A	176_A	1.011	0.97
334_L	338_S	1.007	0.97
175_M	209_L	0.994	0.97
42_A	313_V	0.990	0.97
386_I	390_V	0.987	0.97
119_C	256_A	0.983	0.97
29_F	33_A	0.977	0.96
296_S	304_V	0.970	0.96
83_Y	328_A	0.962	0.96
125_V	129_V	0.962	0.96
224_D	227_L	0.962	0.96
180_V	184_G	0.959	0.96
82_S	306_T	0.959	0.96
67_I	295_L	0.959	0.96
159_A	393_V	0.957	0.96
27_L	324_V	0.957	0.96
152_M	392_L	0.953	0.96
211_G	223_V	0.952	0.96
45_G	51_P	0.948	0.96
101_N	111_I	0.948	0.96
186_V	202_G	0.946	0.96
96_A	100_F	0.943	0.96
323_L	326_V	0.942	0.96
392_L	396_A	0.941	0.96
246_G	249_M	0.941	0.96
182_C	202_G	0.940	0.96
115_G	119_C	0.932	0.95
263_N	285_A	0.930	0.95
170_A	173_S	0.927	0.95
191_R	195_Q	0.925	0.95
380_S	384_N	0.925	0.95
75_I	291_L	0.924	0.95
33_A	37_V	0.922	0.95
55_G	58_P	0.909	0.95
207_C	225_F	0.901	0.94
67_I	71_L	0.900	0.94
39_H	43_M	0.891	0.94
39_H	42_A	0.890	0.94
157_N	411_I	0.889	0.94
152_M	369_A	0.887	0.94
295_L	299_V	0.885	0.94
210_Y	216_V	0.882	0.94
274_T	320_Y	0.880	0.94
37_V	331_I	0.878	0.94
341_F	344_L	0.878	0.94
66_G	329_A	0.876	0.94
28_P	31_Q	0.876	0.94
83_Y	325_F	0.856	0.93
96_A	99_G	0.855	0.93
291_L	295_L	0.854	0.93
236_L	337_F	0.853	0.93
72_F	80_V	0.852	0.93
50_M	88_A	0.850	0.93
46_A	361_F	0.847	0.92
23_P	26_R	0.844	0.92
365_A	392_L	0.842	0.92
200_L	204_I	0.841	0.92
127_G	283_G	0.841	0.92
82_S	267_L	0.839	0.92
247_Q	251_L	0.838	0.92
185_L	424_L	0.836	0.92
70_L	330_V	0.833	0.92
187_A	316_V	0.830	0.92
26_R	32_T	0.830	0.92
21_V	28_P	0.827	0.92
228_V	340_K	0.827	0.92
142_M	415_T	0.826	0.91
277_N	280_P	0.822	0.91
326_V	329_A	0.822	0.91
383_G	387_M	0.822	0.91
87_S	305_T	0.821	0.91
246_G	250_M	0.819	0.91
57_D	238_H	0.817	0.91
274_T	277_N	0.815	0.91
225_F	347_T	0.813	0.91
263_N	289_D	0.810	0.91
187_A	386_I	0.810	0.91
110_S	113_L	0.807	0.91
210_Y	217_L	0.806	0.90
52_I	353_I	0.802	0.90
128_L	287_V	0.802	0.90
202_G	205_V	0.801	0.90
366_V	385_L	0.800	0.90
73_F	322_T	0.800	0.90
207_C	348_I	0.793	0.90
46_A	309_E	0.792	0.90
228_V	347_T	0.792	0.90
33_A	327_A	0.789	0.90
40_A	335_L	0.788	0.89
117_I	121_L	0.784	0.89
82_S	313_V	0.783	0.89
263_N	305_T	0.782	0.89
335_L	341_F	0.781	0.89
58_P	98_T	0.781	0.89
61_S	302_S	0.778	0.89
64_M	296_S	0.778	0.89
149_A	391_T	0.778	0.89
232_A	235_G	0.776	0.89
233_W	338_S	0.771	0.88
399_F	403_L	0.767	0.88
186_V	205_V	0.766	0.88
71_L	75_I	0.765	0.88
217_L	223_V	0.764	0.88
165_S	361_F	0.763	0.88
257_V	261_A	0.761	0.88
259_L	305_T	0.759	0.88
390_V	421_L	0.755	0.87
123_Y	290_G	0.755	0.87
114_G	242_P	0.753	0.87
387_M	391_T	0.753	0.87
402_T	405_G	0.752	0.87
264_L	282_M	0.752	0.87
111_I	248_A	0.751	0.87
387_M	426_S	0.751	0.87
174_W	209_L	0.748	0.87
165_S	353_I	0.748	0.87
280_P	284_R	0.748	0.87
115_G	248_A	0.747	0.87
151_V	266_H	0.745	0.87
317_T	331_I	0.744	0.87
89_A	360_V	0.740	0.86
311_I	314_M	0.740	0.86
169_S	173_S	0.739	0.86
97_A	115_G	0.739	0.86
81_P	325_F	0.736	0.86
47_T	65_S	0.735	0.86
101_N	108_N	0.733	0.86
49_L	165_S	0.732	0.86
92_G	95_I	0.731	0.86
151_V	154_I	0.728	0.85
199_I	313_V	0.727	0.85
64_M	295_L	0.727	0.85
141_L	419_I	0.727	0.85
359_V	386_I	0.726	0.85
400_A	403_L	0.725	0.85
35_M	39_H	0.724	0.85
111_I	115_G	0.724	0.85
175_M	351_A	0.723	0.85
60_L	63_L	0.722	0.85
166_V	358_I	0.721	0.85
86_S	90_F	0.715	0.84
210_Y	222_A	0.714	0.84
185_L	190_T	0.712	0.84
36_G	328_A	0.710	0.84
43_M	83_Y	0.710	0.84
400_A	404_G	0.707	0.84
223_V	347_T	0.707	0.84
257_V	269_A	0.706	0.84
343_A	346_H	0.706	0.84
121_L	124_T	0.703	0.83
50_M	86_S	0.702	0.83
196_R	426_S	0.701	0.83
94_V	116_I	0.700	0.83
43_M	310_N	0.697	0.83
159_A	396_A	0.696	0.83
164_K	167_S	0.695	0.83
59_N	342_G	0.695	0.83
228_V	343_A	0.695	0.83
63_L	337_F	0.695	0.83
326_V	330_V	0.694	0.83
203_L	261_A	0.692	0.82
61_S	65_S	0.691	0.82
208_L	334_L	0.690	0.82
91_V	257_V	0.689	0.82
127_G	290_G	0.688	0.82
372_W	377_V	0.686	0.82
188_V	366_V	0.682	0.81
362_G	366_V	0.681	0.81
137_W	141_L	0.681	0.81
190_T	193_M	0.679	0.81
293_T	304_V	0.678	0.81
395_G	414_A	0.677	0.81
47_T	61_S	0.676	0.81
124_T	128_L	0.676	0.81
389_A	393_V	0.676	0.81
273_M	315_A	0.675	0.81
183_I	186_V	0.674	0.81
110_S	240_S	0.671	0.80
199_I	275_G	0.670	0.80
45_G	309_E	0.670	0.80
89_A	154_I	0.668	0.80
203_L	356_A	0.667	0.80
179_T	206_A	0.666	0.80
64_M	301_G	0.664	0.80
366_V	388_V	0.664	0.80
113_L	117_I	0.662	0.80
194_I	198_L	0.661	0.79
270_V	306_T	0.659	0.79
294_M	298_S	0.658	0.79
61_S	86_S	0.657	0.79
39_H	313_V	0.654	0.79
315_A	370_R	0.654	0.79
33_A	229_S	0.653	0.79
152_M	372_W	0.652	0.78
164_K	170_A	0.651	0.78
143_P	312_G	0.651	0.78
159_A	389_A	0.649	0.78
253_A	256_A	0.649	0.78
125_V	181_L	0.648	0.78
395_G	410_G	0.647	0.78
362_G	385_L	0.645	0.78
130_V	286_F	0.645	0.78
80_V	285_A	0.645	0.78
188_V	364_I	0.645	0.78
71_L	288_G	0.643	0.78
331_I	335_L	0.643	0.78
183_I	359_V	0.643	0.78
84_L	263_N	0.641	0.77
23_P	27_L	0.641	0.77
225_F	344_L	0.638	0.77
60_L	64_M	0.636	0.77
162_A	179_T	0.636	0.77
109_I	113_L	0.633	0.76
64_M	292_A	0.633	0.76
388_V	392_L	0.631	0.76
343_A	347_T	0.630	0.76
175_M	203_L	0.630	0.76
259_L	262_E	0.627	0.76
49_L	52_I	0.626	0.76
262_E	289_D	0.623	0.75
239_F	242_P	0.622	0.75
123_Y	260_V	0.620	0.75
236_L	336_G	0.619	0.75
87_S	90_F	0.619	0.75
293_T	296_S	0.619	0.75
123_Y	256_A	0.617	0.75
169_S	172_D	0.617	0.75
78_G	281_Y	0.616	0.74
398_D	402_T	0.615	0.74
169_S	336_G	0.612	0.74
157_N	409_G	0.612	0.74
164_K	171_F	0.611	0.74
147_T	339_P	0.611	0.74
92_G	96_A	0.611	0.74
208_L	234_F	0.611	0.74
67_I	299_V	0.609	0.74
204_I	344_L	0.608	0.74
419_I	423_A	0.606	0.73
205_V	208_L	0.606	0.73
75_I	280_P	0.605	0.73
266_H	367_A	0.604	0.73
223_V	227_L	0.604	0.73
110_S	241_T	0.603	0.73
309_E	361_F	0.603	0.73
270_V	311_I	0.601	0.73
100_F	108_N	0.601	0.73
29_F	331_I	0.601	0.73
149_A	418_A	0.600	0.73
145_V	384_N	0.599	0.72
94_V	98_T	0.597	0.72
63_L	408_L	0.596	0.72
203_L	353_I	0.595	0.72
137_W	142_M	0.594	0.72
150_V	180_V	0.594	0.72
154_I	307_Y	0.593	0.72
145_V	387_M	0.593	0.72
370_R	376_R	0.593	0.72
257_V	419_I	0.593	0.72
208_L	229_S	0.593	0.72
181_L	184_G	0.593	0.72
252_I	351_A	0.592	0.72
399_F	402_T	0.592	0.72
140_R	423_A	0.590	0.71
43_M	370_R	0.590	0.71
231_A	339_P	0.590	0.71
186_V	194_I	0.589	0.71
379_L	385_L	0.589	0.71
289_D	389_A	0.589	0.71
68_G	288_G	0.589	0.71
266_H	306_T	0.589	0.71
98_T	108_N	0.588	0.71
410_G	414_A	0.585	0.71
117_I	244_F	0.585	0.71
383_G	421_L	0.582	0.70
65_S	82_S	0.582	0.70
269_A	367_A	0.582	0.70
54_M	203_L	0.581	0.70
152_M	365_A	0.581	0.70
108_N	243_A	0.581	0.70
334_L	406_F	0.580	0.70
186_V	198_L	0.579	0.70
278_M	281_Y	0.579	0.70
236_L	257_V	0.578	0.70
115_G	253_A	0.575	0.69
164_K	172_D	0.575	0.69
237_P	359_V	0.574	0.69
47_T	50_M	0.574	0.69
26_R	29_F	0.573	0.69
127_G	131_M	0.573	0.69
393_V	396_A	0.571	0.69
308_A	367_A	0.570	0.69
49_L	53_L	0.570	0.69
84_L	293_T	0.570	0.69
81_P	115_G	0.570	0.69
130_V	143_P	0.568	0.68
187_A	195_Q	0.567	0.68
66_G	70_L	0.567	0.68
161_I	165_S	0.566	0.68
89_A	305_T	0.566	0.68
165_S	357_S	0.565	0.68
207_C	211_G	0.564	0.68
101_N	248_A	0.564	0.68
25_E	321_S	0.564	0.68
72_F	322_T	0.564	0.68
113_L	119_C	0.563	0.68
264_L	268_K	0.563	0.68
201_V	204_I	0.562	0.68
336_G	342_G	0.562	0.68
291_L	294_M	0.562	0.68
414_A	418_A	0.562	0.68
81_P	120_G	0.561	0.67
118_A	253_A	0.561	0.67
97_A	101_N	0.559	0.67
148_G	368_G	0.559	0.67
319_V	353_I	0.558	0.67
379_L	384_N	0.558	0.67
88_A	154_I	0.556	0.67
285_A	289_D	0.556	0.67
289_D	305_T	0.556	0.67
23_P	321_S	0.556	0.67
73_F	329_A	0.556	0.67
33_A	334_L	0.555	0.67
95_I	99_G	0.554	0.67
142_M	192_G	0.553	0.66
256_A	293_T	0.553	0.66
392_L	398_D	0.550	0.66
268_K	318_K	0.550	0.66
211_G	424_L	0.549	0.66
294_M	297_G	0.548	0.66
227_L	231_A	0.547	0.66
47_T	51_P	0.546	0.65
263_N	306_T	0.545	0.65
69_T	305_T	0.545	0.65
70_L	74_F	0.545	0.65
322_T	326_V	0.544	0.65
123_Y	127_G	0.543	0.65
93_V	96_A	0.543	0.65
185_L	246_G	0.542	0.65
327_A	330_V	0.542	0.65
90_F	293_T	0.541	0.65
110_S	114_G	0.540	0.65
259_L	267_L	0.540	0.65
37_V	167_S	0.539	0.64
62_I	342_G	0.536	0.64
81_P	274_T	0.536	0.64
186_V	189_F	0.536	0.64
69_T	329_A	0.536	0.64
425_L	428_K	0.535	0.64
259_L	266_H	0.535	0.64
310_N	313_V	0.534	0.64
29_F	32_T	0.533	0.64
94_V	252_I	0.533	0.64
53_L	95_I	0.532	0.63
383_G	427_R	0.532	0.63
370_R	379_L	0.531	0.63
155_G	162_A	0.527	0.63
54_M	57_D	0.526	0.63
184_G	188_V	0.526	0.63
308_A	311_I	0.526	0.63
241_T	298_S	0.525	0.62
398_D	404_G	0.524	0.62
115_G	123_Y	0.523	0.62
86_S	305_T	0.523	0.62
181_L	230_H	0.523	0.62
36_G	74_F	0.522	0.62
97_A	112_A	0.522	0.62
170_A	204_I	0.521	0.62
97_A	114_G	0.521	0.62
277_N	427_R	0.521	0.62
36_G	316_V	0.521	0.62
195_Q	379_L	0.520	0.62
337_F	341_F	0.520	0.62
41_V	387_M	0.520	0.62
60_L	300_G	0.519	0.62
84_L	267_L	0.518	0.61
21_V	24_D	0.518	0.61
218_G	223_V	0.518	0.61
394_L	399_F	0.517	0.61
124_T	127_G	0.517	0.61
390_V	396_A	0.517	0.61
268_K	271_A	0.517	0.61
68_G	82_S	0.515	0.61
315_A	358_I	0.515	0.61
52_I	55_G	0.513	0.61
412_G	416_F	0.513	0.61
308_A	412_G	0.512	0.61
122_V	256_A	0.512	0.61
35_M	308_A	0.512	0.61
234_F	338_S	0.511	0.60
370_R	380_S	0.510	0.60
93_V	410_G	0.510	0.60
387_M	397_G	0.510	0.60
309_E	363_L	0.509	0.60
266_H	289_D	0.509	0.60
226_T	231_A	0.509	0.60
204_I	424_L	0.508	0.60
40_A	251_L	0.508	0.60
366_V	389_A	0.508	0.60
182_C	201_V	0.507	0.60
372_W	385_L	0.506	0.60
182_C	185_L	0.506	0.60
372_W	379_L	0.505	0.59
381_Q	429_L	0.505	0.59
137_W	279_D	0.503	0.59
265_G	395_G	0.503	0.59
47_T	332_A	0.503	0.59
353_I	356_A	0.501	0.59
129_V	291_L	0.501	0.59
199_I	361_F	0.501	0.59
98_T	339_P	0.500	0.59
166_V	169_S	0.500	0.59
143_P	148_G	0.500	0.59

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3qe7A	2	0.8982	100	0.392	Contact Map
1pw4A	1	0.862	77.2	0.962	Contact Map
2jlnA	1	0.8597	63.9	0.966	Contact Map
3o7qA	1	0.4186	40.6	0.97	Contact Map
4lz6A	1	0.9163	36.6	0.971	Contact Map
2nwlA	3	0.3824	32.7	0.972	Contact Map
3w4tA	1	0.9027	28	0.973	Contact Map
4humA	1	0.9299	25.6	0.973	Contact Map
3mktA	1	0.9367	22	0.974	Contact Map
4j05A	3	0.819	18	0.975	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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