ELFD - ECOLI - GREMLIN Contacts

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ELFD - Probable fimbrial chaperone protein ElfD

UniProt:	P75856	Sequences: MKTCITKGIVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKRKEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPKGAKNSSVTYRTINDYGAETPQLNCKS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13710
Length:	233 (210)
Sequences:	2878 (2180)
Seq/√Len:	150.4

ECOLI - ELFD FIMC SFMC YRAI YCBF YFCS YBGP YEHC YHCA YADV YQIH

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
179_T	194_M	3.260	1.00
67_V	141_L	3.224	1.00
177_F	196_S	3.013	1.00
171_S	200_K	2.959	1.00
42_S	45_E	2.933	1.00
111_L	194_M	2.887	1.00
34_L	139_I	2.866	1.00
196_S	199_D	2.857	1.00
108_R	198_F	2.834	1.00
104_L	112_F	2.751	1.00
169_T	200_K	2.590	1.00
161_C	170_V	2.584	1.00
169_T	202_Q	2.579	1.00
160_R	171_S	2.567	1.00
39_L	48_I	2.527	1.00
61_Y	118_A	2.522	1.00
39_L	114_T	2.447	1.00
39_L	97_I	2.416	1.00
167_M	202_Q	2.391	1.00
154_E	157_A	2.375	1.00
142_F	194_M	2.371	1.00
44_G	146_K	2.352	1.00
220_N	226_T	2.303	1.00
170_V	203_F	2.224	1.00
142_F	177_F	2.133	1.00
60_P	88_N	2.077	1.00
68_M	138_V	2.052	1.00
66_W	115_S	2.012	1.00
162_T	169_T	1.984	1.00
42_S	48_I	1.889	1.00
117_R	136_Q	1.883	1.00
65_S	95_L	1.837	1.00
105_A	110_T	1.833	1.00
155_A	178_I	1.830	1.00
60_P	86_V	1.752	1.00
148_L	176_Y	1.732	1.00
78_F	97_I	1.714	1.00
80_I	95_L	1.648	1.00
34_L	116_V	1.622	1.00
68_M	115_S	1.615	1.00
158_K	174_T	1.604	1.00
155_A	218_T	1.598	1.00
88_N	91_N	1.592	1.00
115_S	138_V	1.548	1.00
159_L	170_V	1.541	1.00
159_L	178_I	1.533	1.00
67_V	76_A	1.516	1.00
178_I	218_T	1.511	1.00
164_S	169_T	1.510	1.00
182_D	217_R	1.472	1.00
111_L	142_F	1.472	1.00
151_P	154_E	1.453	1.00
220_N	224_A	1.450	1.00
99_Y	102_A	1.425	1.00
159_L	180_L	1.420	1.00
63_I	85_F	1.419	1.00
162_T	171_S	1.391	1.00
50_L	114_T	1.388	1.00
41_Y	48_I	1.358	1.00
43_E	106_K	1.343	1.00
47_Q	96_R	1.331	1.00
78_F	141_L	1.320	1.00
152_L	155_A	1.305	1.00
51_G	92_E	1.305	1.00
69_T	73_K	1.302	1.00
184_K	215_T	1.293	1.00
58_D	90_A	1.275	1.00
39_L	139_I	1.268	1.00
105_A	108_R	1.256	1.00
161_C	216_Y	1.255	1.00
195_I	201_Y	1.245	1.00
56_S	118_A	1.236	1.00
111_L	179_T	1.230	1.00
167_M	204_S	1.227	1.00
175_P	198_F	1.205	1.00
80_I	97_I	1.201	1.00
34_L	50_L	1.190	1.00
179_T	218_T	1.179	1.00
164_S	167_M	1.169	1.00
218_T	226_T	1.166	1.00
43_E	146_K	1.166	1.00
156_P	178_I	1.164	1.00
66_W	138_V	1.137	1.00
52_V	87_L	1.130	1.00
181_T	225_E	1.117	0.99
99_Y	143_W	1.115	0.99
99_Y	103_P	1.104	0.99
97_I	141_L	1.091	0.99
123_T	130_T	1.085	0.99
118_A	135_T	1.055	0.99
114_T	141_L	1.055	0.99
168_V	205_L	1.053	0.99
163_S	166_D	1.043	0.99
123_T	132_K	1.040	0.99
68_M	72_N	1.037	0.99
31_G	118_A	1.035	0.99
113_F	138_V	1.033	0.99
14_L	22_S	1.029	0.99
85_F	93_N	1.024	0.99
33_G	36_A	1.019	0.99
35_A	51_G	1.012	0.99
66_W	117_R	1.012	0.99
32_I	63_I	1.010	0.99
95_L	114_T	1.008	0.99
150_Y	176_Y	0.998	0.99
53_R	92_E	0.996	0.99
41_Y	98_M	0.995	0.99
43_E	143_W	0.993	0.99
32_I	87_L	0.989	0.99
36_A	50_L	0.989	0.99
217_R	225_E	0.982	0.99
184_K	189_V	0.975	0.99
93_N	117_R	0.971	0.98
34_L	52_V	0.966	0.98
158_K	173_P	0.964	0.98
156_P	216_Y	0.943	0.98
180_L	195_I	0.942	0.98
56_S	61_Y	0.941	0.98
71_D	74_K	0.938	0.98
18_L	21_C	0.927	0.98
180_L	218_T	0.924	0.98
87_L	92_E	0.921	0.98
68_M	113_F	0.914	0.98
95_L	116_V	0.905	0.98
184_K	187_G	0.890	0.97
67_V	80_I	0.886	0.97
38_R	144_R	0.882	0.97
35_A	92_E	0.881	0.97
80_I	114_T	0.875	0.97
140_K	219_I	0.864	0.97
154_E	158_K	0.846	0.96
93_N	118_A	0.839	0.96
56_S	59_V	0.839	0.96
65_S	116_V	0.837	0.96
41_Y	78_F	0.835	0.96
168_V	183_L	0.828	0.96
181_T	219_I	0.826	0.96
107_D	198_F	0.825	0.96
52_V	63_I	0.822	0.96
171_S	198_F	0.817	0.96
113_F	117_R	0.816	0.96
109_E	144_R	0.812	0.95
134_A	161_C	0.807	0.95
160_R	173_P	0.800	0.95
65_S	80_I	0.797	0.95
177_F	197_P	0.796	0.95
39_L	50_L	0.792	0.95
147_G	150_Y	0.789	0.95
156_P	218_T	0.784	0.95
112_F	143_W	0.780	0.94
85_F	95_L	0.778	0.94
104_L	108_R	0.777	0.94
152_L	178_I	0.772	0.94
61_Y	117_R	0.772	0.94
180_L	224_A	0.769	0.94
87_L	93_N	0.755	0.93
152_L	156_P	0.754	0.93
111_L	177_F	0.745	0.93
185_I	214_V	0.737	0.93
67_V	119_V	0.730	0.92
36_A	39_L	0.728	0.92
40_V	144_R	0.723	0.92
38_R	140_K	0.722	0.92
51_G	84_L	0.720	0.92
38_R	145_P	0.717	0.91
115_S	136_Q	0.717	0.91
69_T	75_S	0.716	0.91
150_Y	155_A	0.715	0.91
151_P	158_K	0.709	0.91
161_C	183_L	0.709	0.91
70_P	113_F	0.708	0.91
31_G	61_Y	0.707	0.91
116_V	139_I	0.704	0.91
115_S	140_K	0.700	0.91
64_Q	117_R	0.698	0.90
185_I	213_S	0.697	0.90
33_G	137_S	0.691	0.90
179_T	192_N	0.691	0.90
164_S	202_Q	0.689	0.90
63_I	87_L	0.689	0.90
31_G	55_T	0.688	0.90
16_A	19_L	0.685	0.90
188_K	208_G	0.685	0.90
106_K	147_G	0.680	0.89
87_L	91_N	0.679	0.89
150_Y	154_E	0.676	0.89
168_V	214_V	0.675	0.89
33_G	55_T	0.674	0.89
70_P	111_L	0.673	0.89
161_C	168_V	0.670	0.89
61_Y	65_S	0.669	0.88
205_L	209_A	0.669	0.88
69_T	76_A	0.668	0.88
97_I	114_T	0.666	0.88
19_L	26_A	0.666	0.88
15_T	23_S	0.659	0.88
192_N	203_F	0.658	0.88
167_M	205_L	0.656	0.87
55_T	121_S	0.656	0.87
25_W	29_K	0.655	0.87
183_L	203_F	0.654	0.87
140_K	179_T	0.652	0.87
110_T	143_W	0.647	0.87
84_L	92_E	0.647	0.87
156_P	159_L	0.646	0.87
14_L	18_L	0.645	0.87
187_G	215_T	0.641	0.86
118_A	134_A	0.641	0.86
52_V	121_S	0.641	0.86
65_S	93_N	0.639	0.86
205_L	208_G	0.639	0.86
113_F	140_K	0.638	0.86
140_K	144_R	0.637	0.86
60_P	121_S	0.635	0.86
107_D	144_R	0.632	0.85
17_I	20_S	0.631	0.85
108_R	145_P	0.631	0.85
14_L	17_I	0.630	0.85
156_P	174_T	0.630	0.85
20_S	25_W	0.624	0.85
104_L	107_D	0.622	0.85
19_L	22_S	0.621	0.84
42_S	142_F	0.621	0.84
23_S	189_V	0.621	0.84
27_A	209_A	0.620	0.84
96_R	120_P	0.620	0.84
32_I	61_Y	0.618	0.84
113_F	179_T	0.616	0.84
216_Y	226_T	0.616	0.84
34_L	62_L	0.613	0.84
41_Y	99_Y	0.611	0.84
24_A	162_T	0.608	0.83
41_Y	46_E	0.608	0.83
166_D	207_K	0.607	0.83
34_L	55_T	0.606	0.83
135_T	192_N	0.605	0.83
129_N	132_K	0.596	0.82
78_F	110_T	0.596	0.82
24_A	28_G	0.594	0.82
146_K	149_A	0.593	0.82
166_D	204_S	0.591	0.81
107_D	110_T	0.589	0.81
70_P	138_V	0.589	0.81
186_G	191_K	0.587	0.81
41_Y	45_E	0.587	0.81
83_P	119_V	0.580	0.80
186_G	212_S	0.577	0.80
104_L	110_T	0.577	0.80
30_G	33_G	0.576	0.80
131_L	138_V	0.576	0.80
156_P	173_P	0.574	0.80
182_D	189_V	0.574	0.80
15_T	18_L	0.574	0.80
188_K	191_K	0.573	0.79
62_L	117_R	0.573	0.79
144_R	197_P	0.573	0.79
37_T	144_R	0.572	0.79
190_V	208_G	0.571	0.79
78_F	143_W	0.571	0.79
38_R	221_D	0.566	0.79
103_P	106_K	0.563	0.78
14_L	19_L	0.560	0.78
18_L	29_K	0.557	0.78
56_S	117_R	0.556	0.77
98_M	197_P	0.555	0.77
29_K	168_V	0.554	0.77
27_A	207_K	0.553	0.77
62_L	176_Y	0.550	0.77
65_S	85_F	0.549	0.77
113_F	116_V	0.549	0.77
183_L	205_L	0.548	0.76
170_V	195_I	0.546	0.76
21_C	191_K	0.545	0.76
26_A	207_K	0.544	0.76
124_K	160_R	0.544	0.76
145_P	197_P	0.542	0.76
201_Y	204_S	0.542	0.76
61_Y	87_L	0.541	0.75
52_V	116_V	0.540	0.75
180_L	216_Y	0.540	0.75
195_I	199_D	0.539	0.75
19_L	25_W	0.536	0.75
22_S	211_N	0.535	0.75
148_L	175_P	0.531	0.74
26_A	29_K	0.530	0.74
119_V	135_T	0.530	0.74
122_T	132_K	0.530	0.74
159_L	218_T	0.529	0.74
27_A	204_S	0.527	0.74
64_Q	96_R	0.525	0.73
184_K	217_R	0.525	0.73
219_I	226_T	0.524	0.73
120_P	134_A	0.523	0.73
118_A	136_Q	0.521	0.73
20_S	24_A	0.518	0.72
51_G	117_R	0.516	0.72
180_L	183_L	0.515	0.72
50_L	97_I	0.513	0.72
77_D	110_T	0.513	0.72
25_W	28_G	0.512	0.71
68_M	133_I	0.511	0.71
62_L	118_A	0.511	0.71
188_K	211_N	0.511	0.71
68_M	117_R	0.510	0.71
113_F	136_Q	0.509	0.71
161_C	214_V	0.507	0.71
67_V	112_F	0.507	0.71
168_V	202_Q	0.506	0.71
151_P	156_P	0.504	0.70
45_E	102_A	0.503	0.70
153_G	157_A	0.501	0.70
49_S	133_I	0.501	0.70
14_L	26_A	0.501	0.70
166_D	208_G	0.501	0.70
161_C	194_M	0.500	0.70

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1l4iA	2	0.8155	100	0.147	Contact Map
2co7B	1	0.8412	100	0.149	Contact Map
1klfA	1	0.867	100	0.149	Contact Map
2xg5A	1	0.8455	100	0.181	Contact Map
3q48A	1	0.7897	100	0.185	Contact Map
3gfuC	1	0.8283	100	0.193	Contact Map
4ay0A	2	0.8026	100	0.196	Contact Map
4djmA	1	0.8541	100	0.198	Contact Map
4ncdA	2	0.7983	100	0.267	Contact Map
1mspA	3	0.4764	91.7	0.917	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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