YCAM - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YCAM - Inner membrane transporter YcaM

UniProt:	P75835	Sequences: MAGNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWVFIFALYFTPYALIVGQLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQKPQAILIALGWAMKGDGSLIKEYSVVALQGLTLVLFIFFMWVASRGMKSLKIVGSVAGIAMFVMSLLYVAMAVTAPAITEVHIATTNITWETFIPHIDFTYITTISMLVFAVGGAEKISPYVNQTRNPGKEFPKGMLCLAVMVAVCAILGSLAMGMMFDSRNIPDDLMTNGQYYAFQKLGEYYNMGNTLMVIYAIANTLGQVAALVFSIDAPLKVLLGDADSKYIPASLCRTNASGTPVNGYFLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFIAVVRLAQKYKPEYVFIRNKPLAMTVGIWCFAFTAFACLTGIFPKMEAFTAEWTFQLALNVATPFVLVGLGLIFPLLARKANSK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13697
Length:	476 (420)
Sequences:	25020 (16630)
Seq/√Len:	811.5

ECOLI - YCAM GADC YJEM YGJI AROP YIFK FRLA PROY POTE GABP MMUP LYSP ADIC PHEP ANSP PUUP PLAP CYCA YBAT YJEH ARCD CADB TNAB
BACSU - YBXG ROCC GABP YBGF AAPA YDGF YTNA HUTM YVBW ASPP YHDG ROCE STET YBEC ARCD YFNA YECA YCGH YDAO GERAB GERBB YNDE GERKB
HALSA - Q9HHU7 Q9HQB3 Q9HSL5
SULSO - Q97XM0 Q97WS3 Q97U05 Q97X49 Q7LXI7 Q97ZB5 Q97Z63 Q97VA8 Q97VA6 Q97VR4 Q97U33 Q97WD4 Q97Y76 Q97YN3 Q97YX9 Q97U39

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
143_M	349_L	4.305	1.00
331_S	343_N	4.302	1.00
394_A	398_L	3.276	1.00
334_R	343_N	3.028	1.00
233_K	237_K	2.913	1.00
11_R	229_R	2.786	1.00
230_N	233_K	2.661	1.00
74_S	325_S	2.650	1.00
228_T	234_E	2.637	1.00
323_A	333_C	2.570	1.00
90_A	322_D	2.563	1.00
175_A	256_A	2.524	1.00
336_N	342_V	2.517	1.00
136_L	353_A	2.473	1.00
48_F	247_A	2.468	1.00
331_S	334_R	2.438	1.00
386_L	423_F	2.397	1.00
16_A	241_C	2.393	1.00
461_G	465_I	2.352	1.00
61_Q	396_V	2.316	1.00
12_W	241_C	2.288	1.00
173_A	177_T	2.200	1.00
226_N	324_D	2.174	1.00
291_T	295_I	2.140	1.00
144_W	148_R	2.127	1.00
78_K	86_A	2.055	1.00
320_L	324_D	2.049	1.00
277_Y	280_Q	2.036	1.00
12_W	234_E	2.034	1.00
346_F	350_V	2.027	1.00
147_S	342_V	1.996	1.00
227_Q	317_K	1.991	1.00
16_A	245_M	1.990	1.00
15_I	228_T	1.988	1.00
151_K	155_I	1.973	1.00
274_G	278_A	1.970	1.00
140_I	353_A	1.970	1.00
136_L	356_I	1.965	1.00
143_M	345_Y	1.946	1.00
12_W	16_A	1.933	1.00
237_K	241_C	1.930	1.00
45_V	49_A	1.917	1.00
81_M	394_A	1.893	1.00
162_I	166_V	1.873	1.00
78_K	83_P	1.854	1.00
11_R	14_N	1.852	1.00
332_L	347_L	1.848	1.00
426_T	429_A	1.843	1.00
415_A	419_G	1.839	1.00
94_W	348_T	1.824	1.00
135_T	356_I	1.819	1.00
326_K	330_A	1.818	1.00
448_Q	451_L	1.818	1.00
58_I	389_F	1.810	1.00
447_F	450_A	1.800	1.00
459_L	463_G	1.779	1.00
49_A	53_T	1.766	1.00
420_I	424_A	1.752	1.00
6_Q	335_T	1.725	1.00
451_L	455_T	1.710	1.00
262_D	265_N	1.704	1.00
77_I	89_A	1.687	1.00
416_M	420_I	1.686	1.00
230_N	234_E	1.685	1.00
140_I	349_L	1.684	1.00
81_M	390_V	1.676	1.00
14_N	158_S	1.666	1.00
336_N	340_T	1.660	1.00
422_C	426_T	1.644	1.00
44_W	47_I	1.628	1.00
277_Y	281_K	1.627	1.00
431_L	435_F	1.611	1.00
240_L	244_V	1.611	1.00
101_L	352_V	1.604	1.00
190_N	193_W	1.602	1.00
449_L	453_V	1.589	1.00
166_V	170_L	1.588	1.00
146_A	309_V	1.579	1.00
147_S	346_F	1.537	1.00
105_P	308_L	1.535	1.00
89_A	387_W	1.533	1.00
338_S	342_V	1.532	1.00
429_A	432_T	1.528	1.00
19_S	242_L	1.513	1.00
139_F	352_V	1.512	1.00
82_G	85_L	1.501	1.00
278_A	283_G	1.493	1.00
271_M	277_Y	1.493	1.00
112_L	134_L	1.491	1.00
319_L	344_G	1.485	1.00
7_E	339_G	1.484	1.00
456_P	460_V	1.483	1.00
434_I	437_K	1.479	1.00
10_L	14_N	1.477	1.00
455_T	458_V	1.468	1.00
271_M	274_G	1.463	1.00
394_A	397_R	1.459	1.00
460_V	463_G	1.452	1.00
183_E	186_I	1.442	1.00
224_Y	313_D	1.407	1.00
389_F	422_C	1.396	1.00
105_P	139_F	1.396	1.00
244_V	248_V	1.396	1.00
167_M	299_A	1.395	1.00
108_I	138_L	1.389	1.00
428_F	432_T	1.388	1.00
43_S	207_T	1.384	1.00
330_A	333_C	1.380	1.00
414_L	418_V	1.378	1.00
454_A	458_V	1.377	1.00
424_A	428_F	1.373	1.00
401_K	404_P	1.372	1.00
192_T	195_T	1.372	1.00
81_M	85_L	1.370	1.00
447_F	451_L	1.367	1.00
315_P	348_T	1.354	1.00
273_N	277_Y	1.354	1.00
429_A	433_G	1.349	1.00
56_A	243_A	1.348	1.00
39_V	204_Y	1.345	1.00
230_N	237_K	1.344	1.00
41_V	44_W	1.342	1.00
422_C	425_F	1.339	1.00
148_R	338_S	1.335	1.00
77_I	387_W	1.331	1.00
143_M	346_F	1.330	1.00
316_L	345_Y	1.324	1.00
343_N	347_L	1.324	1.00
320_L	335_T	1.323	1.00
44_W	52_F	1.318	1.00
40_V	44_W	1.310	1.00
139_F	349_L	1.306	1.00
418_V	422_C	1.306	1.00
176_V	256_A	1.304	1.00
66_F	79_H	1.302	1.00
459_L	462_L	1.300	1.00
457_F	461_G	1.296	1.00
192_T	197_I	1.295	1.00
14_N	154_K	1.295	1.00
422_C	429_A	1.286	1.00
334_R	342_V	1.269	1.00
70_K	226_N	1.263	1.00
294_V	298_I	1.256	1.00
445_W	449_L	1.255	1.00
44_W	51_Y	1.253	1.00
136_L	140_I	1.252	1.00
55_Y	389_F	1.251	1.00
40_V	43_S	1.250	1.00
450_A	454_A	1.250	1.00
172_V	252_L	1.248	1.00
179_P	259_M	1.243	1.00
330_A	334_R	1.241	1.00
80_T	391_A	1.241	1.00
445_W	448_Q	1.236	1.00
274_G	277_Y	1.233	1.00
108_I	301_T	1.222	1.00
45_V	52_F	1.222	1.00
430_C	433_G	1.221	1.00
6_Q	320_L	1.206	1.00
12_W	237_K	1.206	1.00
416_M	419_G	1.201	1.00
453_V	457_F	1.200	1.00
142_F	308_L	1.195	1.00
455_T	459_L	1.185	1.00
390_V	394_A	1.184	1.00
13_Y	17_L	1.183	1.00
56_A	239_M	1.183	1.00
31_N	35_N	1.181	1.00
417_T	420_I	1.180	1.00
10_L	15_I	1.180	1.00
23_V	246_V	1.173	1.00
104_K	307_A	1.170	1.00
433_G	436_P	1.165	1.00
417_T	421_W	1.161	1.00
234_E	237_K	1.160	1.00
231_P	236_P	1.158	1.00
448_Q	457_F	1.157	1.00
32_N	36_Q	1.152	1.00
248_V	252_L	1.150	1.00
32_N	40_V	1.149	1.00
57_L	240_L	1.148	1.00
280_Q	293_M	1.147	1.00
10_L	154_K	1.144	1.00
434_I	438_M	1.143	1.00
165_F	169_L	1.141	1.00
41_V	45_V	1.136	1.00
446_T	449_L	1.134	1.00
24_W	27_G	1.132	1.00
451_L	454_A	1.131	1.00
75_T	79_H	1.126	1.00
319_L	328_I	1.124	1.00
426_T	430_C	1.123	1.00
419_G	422_C	1.121	1.00
449_L	455_T	1.119	1.00
461_G	464_L	1.118	1.00
171_Y	175_A	1.117	1.00
446_T	450_A	1.103	1.00
39_V	197_I	1.101	1.00
263_S	266_I	1.095	1.00
397_R	400_Q	1.088	1.00
274_G	283_G	1.084	1.00
15_I	238_G	1.082	1.00
175_A	260_M	1.081	1.00
430_C	434_I	1.080	1.00
229_R	234_E	1.080	1.00
448_Q	455_T	1.079	1.00
445_W	451_L	1.078	1.00
19_S	221_I	1.078	1.00
448_Q	459_L	1.068	1.00
445_W	459_L	1.059	1.00
416_M	433_G	1.057	1.00
279_F	283_G	1.053	1.00
47_I	211_L	1.052	1.00
77_I	85_L	1.047	1.00
390_V	423_F	1.047	1.00
459_L	464_L	1.042	1.00
419_G	433_G	1.041	1.00
59_V	73_V	1.040	1.00
133_G	137_V	1.039	1.00
94_W	319_L	1.038	1.00
400_Q	404_P	1.037	1.00
156_V	160_A	1.035	1.00
9_Q	229_R	1.027	1.00
18_M	224_Y	1.026	1.00
414_L	419_G	1.024	1.00
44_W	48_F	1.019	1.00
343_N	346_F	1.017	1.00
454_A	457_F	1.012	1.00
132_Q	136_L	1.009	1.00
275_Q	280_Q	1.008	1.00
109_L	134_L	1.008	1.00
324_D	333_C	1.007	1.00
193_W	196_F	1.006	1.00
275_Q	283_G	1.004	1.00
41_V	255_L	1.003	1.00
176_V	180_A	1.002	1.00
170_L	174_M	1.001	1.00
157_G	309_V	0.999	1.00
143_M	147_S	0.998	1.00
63_G	76_W	0.994	1.00
191_I	195_T	0.993	1.00
427_A	431_L	0.989	1.00
402_Y	405_E	0.986	1.00
145_V	156_V	0.985	1.00
44_W	49_A	0.985	1.00
112_L	116_M	0.980	1.00
335_T	339_G	0.980	1.00
155_I	159_V	0.979	1.00
459_L	465_I	0.976	1.00
458_V	462_L	0.976	1.00
283_G	292_L	0.975	1.00
49_A	417_T	0.967	1.00
190_N	194_E	0.966	1.00
87_Y	91_W	0.965	1.00
74_S	321_G	0.963	1.00
350_V	354_I	0.963	1.00
150_M	313_D	0.958	1.00
189_T	194_E	0.958	1.00
20_F	245_M	0.958	1.00
205_I	428_F	0.951	1.00
191_I	194_E	0.949	1.00
42_F	45_V	0.947	1.00
169_L	173_A	0.946	1.00
275_Q	279_F	0.941	1.00
397_R	416_M	0.938	1.00
433_G	437_K	0.935	1.00
61_Q	64_S	0.934	1.00
45_V	51_Y	0.931	1.00
448_Q	453_V	0.925	1.00
452_N	456_P	0.923	1.00
419_G	423_F	0.921	1.00
65_T	402_Y	0.920	1.00
137_V	141_F	0.918	1.00
65_T	404_P	0.917	1.00
160_A	306_A	0.914	1.00
43_S	51_Y	0.909	1.00
193_W	197_I	0.902	1.00
140_I	144_W	0.900	1.00
431_L	434_I	0.898	1.00
68_D	75_T	0.894	1.00
184_V	187_A	0.893	1.00
447_F	456_P	0.889	1.00
446_T	451_L	0.885	1.00
216_G	381_M	0.882	1.00
454_A	460_V	0.878	1.00
17_L	158_S	0.875	1.00
312_I	349_L	0.873	1.00
79_H	399_A	0.872	1.00
399_A	402_Y	0.870	1.00
225_V	235_F	0.869	1.00
20_F	246_V	0.868	1.00
25_G	28_N	0.867	1.00
141_F	305_V	0.863	1.00
283_G	288_M	0.862	1.00
451_L	463_G	0.862	1.00
455_T	460_V	0.861	1.00
449_L	454_A	0.857	1.00
425_F	429_A	0.855	1.00
172_V	256_A	0.853	1.00
103_Q	213_F	0.853	1.00
276_Y	280_Q	0.852	1.00
447_F	464_L	0.850	1.00
386_L	390_V	0.849	1.00
447_F	455_T	0.848	1.00
48_F	215_V	0.842	1.00
78_K	325_S	0.841	1.00
414_L	417_T	0.840	1.00
419_G	429_A	0.839	1.00
219_E	223_P	0.839	1.00
451_L	457_F	0.834	1.00
457_F	460_V	0.833	1.00
423_F	427_A	0.833	1.00
206_T	210_M	0.833	1.00
450_A	453_V	0.832	1.00
460_V	464_L	0.830	1.00
147_S	340_T	0.829	1.00
332_L	343_N	0.829	1.00
39_V	44_W	0.827	1.00
112_L	301_T	0.825	1.00
33_Y	40_V	0.822	1.00
9_Q	151_K	0.821	1.00
241_C	245_M	0.821	1.00
450_A	459_L	0.820	1.00
447_F	453_V	0.819	1.00
265_N	281_K	0.818	1.00
447_F	454_A	0.817	1.00
275_Q	278_A	0.817	1.00
142_F	309_V	0.816	1.00
24_W	29_V	0.813	1.00
186_I	189_T	0.808	1.00
147_S	336_N	0.807	1.00
31_N	34_A	0.804	1.00
109_L	135_T	0.804	1.00
103_Q	374_L	0.802	1.00
190_N	195_T	0.801	1.00
393_I	416_M	0.801	1.00
13_Y	158_S	0.800	1.00
255_L	259_M	0.800	1.00
198_P	202_F	0.796	1.00
164_M	303_G	0.795	1.00
14_N	155_I	0.792	1.00
165_F	249_C	0.786	1.00
30_V	107_A	0.785	1.00
155_I	158_S	0.784	1.00
453_V	456_P	0.780	1.00
280_Q	290_N	0.780	1.00
71_G	74_S	0.779	1.00
448_Q	461_G	0.779	1.00
108_I	305_V	0.776	1.00
247_A	251_I	0.776	1.00
445_W	450_A	0.775	1.00
220_K	314_A	0.774	1.00
451_L	461_G	0.766	1.00
134_L	137_V	0.766	1.00
451_L	465_I	0.764	1.00
342_V	346_F	0.764	1.00
451_L	456_P	0.764	1.00
71_G	75_T	0.762	1.00
349_L	353_A	0.760	1.00
336_N	339_G	0.760	1.00
422_C	431_L	0.757	1.00
174_M	283_G	0.756	1.00
64_S	405_E	0.755	1.00
172_V	176_V	0.754	1.00
45_V	251_I	0.753	1.00
91_W	328_I	0.743	1.00
189_T	192_T	0.743	1.00
450_A	455_T	0.742	1.00
62_L	392_F	0.742	1.00
290_N	294_V	0.741	1.00
47_I	51_Y	0.739	1.00
426_T	433_G	0.737	1.00
419_G	430_C	0.736	1.00
77_I	391_A	0.736	1.00
328_I	332_L	0.735	1.00
40_V	254_S	0.732	1.00
142_F	312_I	0.729	1.00
452_N	455_T	0.728	1.00
445_W	455_T	0.727	1.00
449_L	459_L	0.727	1.00
171_Y	279_F	0.725	1.00
192_T	196_F	0.725	1.00
108_I	304_Q	0.725	1.00
448_Q	454_A	0.724	1.00
84_G	88_L	0.724	1.00
462_L	465_I	0.723	1.00
132_Q	356_I	0.719	1.00
9_Q	150_M	0.718	1.00
139_F	356_I	0.718	1.00
393_I	419_G	0.718	1.00
144_W	147_S	0.718	1.00
65_T	400_Q	0.717	1.00
449_L	457_F	0.716	1.00
416_M	436_P	0.713	1.00
393_I	420_I	0.713	1.00
456_P	463_G	0.712	1.00
6_Q	317_K	0.711	1.00
392_F	396_V	0.707	1.00
22_T	310_F	0.705	1.00
396_V	400_Q	0.705	1.00
435_F	438_M	0.705	1.00
106_Q	373_L	0.705	1.00
85_L	387_W	0.704	1.00
45_V	48_F	0.704	1.00
376_L	380_V	0.703	1.00
6_Q	227_Q	0.699	1.00
446_T	453_V	0.697	1.00
185_H	189_T	0.696	1.00
80_T	394_A	0.696	1.00
446_T	459_L	0.695	1.00
47_I	52_F	0.691	1.00
38_L	258_G	0.690	1.00
422_C	433_G	0.690	1.00
12_W	238_G	0.688	1.00
451_L	460_V	0.687	1.00
449_L	458_V	0.687	1.00
148_R	152_S	0.685	1.00
422_C	436_P	0.684	1.00
198_P	201_D	0.682	1.00
420_I	423_F	0.677	1.00
451_L	458_V	0.676	1.00
176_V	252_L	0.676	1.00
395_V	399_A	0.675	1.00
43_S	47_I	0.673	1.00
197_I	201_D	0.672	1.00
13_Y	155_I	0.672	1.00
177_T	180_A	0.668	1.00
116_M	119_D	0.666	1.00
50_L	425_F	0.666	1.00
415_A	422_C	0.666	1.00
62_L	76_W	0.666	1.00
273_N	276_Y	0.665	1.00
391_A	395_V	0.664	1.00
393_I	397_R	0.663	1.00
291_T	294_V	0.662	1.00
74_S	78_K	0.661	1.00
117_K	120_G	0.660	1.00
456_P	459_L	0.659	1.00
183_E	187_A	0.658	1.00
449_L	452_N	0.657	1.00
39_V	42_F	0.656	1.00
425_F	428_F	0.656	1.00
43_S	48_F	0.655	1.00
146_A	345_Y	0.654	1.00
448_Q	456_P	0.653	1.00
337_A	342_V	0.651	1.00
418_V	426_T	0.648	1.00
458_V	465_I	0.647	1.00
118_G	121_S	0.646	1.00
429_A	434_I	0.643	1.00
136_L	357_M	0.642	1.00
216_G	385_Y	0.642	1.00
146_A	313_D	0.642	1.00
425_F	432_T	0.641	1.00
24_W	164_M	0.640	1.00
41_V	258_G	0.639	1.00
38_L	41_V	0.638	1.00
404_P	408_F	0.638	1.00
448_Q	465_I	0.636	1.00
189_T	193_W	0.636	1.00
350_V	353_A	0.636	1.00
267_P	271_M	0.634	1.00
48_F	52_F	0.633	1.00
236_P	239_M	0.631	1.00
21_I	161_G	0.630	1.00
91_W	455_T	0.629	1.00
179_P	256_A	0.628	1.00
109_L	131_L	0.627	1.00
100_Y	377_N	0.626	1.00
419_G	425_F	0.625	1.00
445_W	454_A	0.624	1.00
446_T	455_T	0.623	1.00
172_V	253_G	0.623	1.00
81_M	391_A	0.622	1.00
116_M	120_G	0.621	1.00
80_T	395_V	0.620	1.00
52_F	57_L	0.619	1.00
449_L	462_L	0.618	1.00
245_M	249_C	0.617	1.00
58_I	419_G	0.616	1.00
288_M	291_T	0.616	1.00
379_V	430_C	0.615	1.00
447_F	461_G	0.615	1.00
230_N	236_P	0.614	1.00
449_L	464_L	0.613	1.00
404_P	407_V	0.613	1.00
100_Y	103_Q	0.612	1.00
422_C	435_F	0.611	1.00
449_L	463_G	0.610	1.00
422_C	432_T	0.608	1.00
154_K	158_S	0.607	1.00
203_T	206_T	0.606	1.00
20_F	161_G	0.606	1.00
93_Y	97_H	0.605	1.00
59_V	388_V	0.605	1.00
450_A	457_F	0.605	1.00
433_G	438_M	0.605	1.00
445_W	458_V	0.603	1.00
451_L	459_L	0.603	1.00
97_H	311_S	0.603	1.00
450_A	463_G	0.601	1.00
453_V	464_L	0.599	1.00
422_C	430_C	0.599	1.00
174_M	178_A	0.598	1.00
56_A	218_A	0.597	1.00
417_T	422_C	0.596	1.00
16_A	238_G	0.596	1.00
426_T	434_I	0.595	1.00
450_A	456_P	0.593	1.00
152_S	155_I	0.593	1.00
332_L	344_G	0.592	1.00
98_I	351_L	0.592	1.00
453_V	463_G	0.592	1.00
96_V	381_M	0.589	1.00
331_S	347_L	0.588	1.00
380_V	384_R	0.587	1.00
341_P	344_G	0.586	1.00
16_A	19_S	0.586	1.00
323_A	332_L	0.584	1.00
139_F	353_A	0.584	1.00
451_L	462_L	0.583	1.00
92_T	384_R	0.582	1.00
458_V	464_L	0.581	1.00
191_I	196_F	0.581	1.00
226_N	320_L	0.580	1.00
65_T	405_E	0.577	1.00
452_N	463_G	0.577	1.00
70_K	320_L	0.576	1.00
102_A	355_L	0.575	1.00
138_L	308_L	0.574	1.00
273_N	280_Q	0.574	1.00
9_Q	13_Y	0.573	1.00
429_A	436_P	0.573	1.00
147_S	338_S	0.570	1.00
426_T	438_M	0.570	1.00
458_V	461_G	0.570	1.00
316_L	344_G	0.569	1.00
111_A	300_N	0.569	1.00
278_A	282_L	0.568	1.00
425_F	433_G	0.568	1.00
454_A	465_I	0.567	1.00
295_I	299_A	0.565	1.00
19_S	23_V	0.562	1.00
298_I	302_L	0.562	1.00
41_V	51_Y	0.562	1.00
163_A	299_A	0.561	1.00
317_K	320_L	0.561	1.00
42_F	46_F	0.561	1.00
112_L	138_L	0.560	1.00
44_W	50_L	0.559	1.00
99_P	376_L	0.558	1.00
23_V	242_L	0.557	1.00
147_S	345_Y	0.557	1.00
96_V	99_P	0.556	1.00
180_A	184_V	0.555	1.00
81_M	84_G	0.553	1.00
312_I	316_L	0.552	1.00
22_T	311_S	0.552	1.00
195_T	198_P	0.551	1.00
216_G	219_E	0.549	1.00
445_W	462_L	0.549	1.00
256_A	259_M	0.548	1.00
197_I	204_Y	0.548	1.00
115_A	298_I	0.547	1.00
276_Y	279_F	0.546	1.00
193_W	198_P	0.546	1.00
319_L	347_L	0.544	1.00
74_S	90_A	0.542	1.00
241_C	244_V	0.541	1.00
45_V	53_T	0.541	1.00
38_L	263_S	0.540	1.00
453_V	458_V	0.539	1.00
114_W	297_A	0.538	1.00
140_I	143_M	0.537	1.00
85_L	88_L	0.537	1.00
142_F	305_V	0.535	1.00
199_H	202_F	0.535	1.00
450_A	460_V	0.535	1.00
222_S	239_M	0.534	1.00
403_K	407_V	0.533	1.00
149_G	152_S	0.532	1.00
245_M	248_V	0.531	1.00
13_Y	16_A	0.531	1.00
109_L	112_L	0.531	1.00
419_G	436_P	0.531	1.00
422_C	438_M	0.531	1.00
335_T	338_S	0.530	1.00
63_G	222_S	0.530	1.00
73_V	219_E	0.529	1.00
432_T	435_F	0.525	1.00
445_W	456_P	0.525	1.00
39_V	43_S	0.524	1.00
453_V	462_L	0.523	1.00
431_L	436_P	0.523	1.00
223_P	314_A	0.523	1.00
8_K	229_R	0.523	1.00
74_S	86_A	0.522	1.00
453_V	460_V	0.521	1.00
260_M	278_A	0.519	1.00
35_N	206_T	0.519	1.00
425_F	431_L	0.519	1.00
163_A	167_M	0.518	1.00
102_A	373_L	0.518	1.00
392_F	419_G	0.518	1.00
454_A	461_G	0.517	1.00
429_A	437_K	0.516	1.00
68_D	79_H	0.516	1.00
419_G	431_L	0.515	1.00
253_G	257_M	0.515	1.00
42_F	204_Y	0.514	1.00
31_N	36_Q	0.514	1.00
62_L	80_T	0.514	1.00
452_N	458_V	0.514	1.00
47_I	50_L	0.513	1.00
447_F	458_V	0.513	1.00
53_T	421_W	0.512	1.00
457_F	465_I	0.512	1.00
273_N	283_G	0.512	1.00
454_A	459_L	0.512	1.00
252_L	256_A	0.512	1.00
58_I	408_F	0.511	1.00
414_L	433_G	0.510	1.00
187_A	193_W	0.509	1.00
154_K	309_V	0.509	1.00
143_M	312_I	0.505	1.00
415_A	429_A	0.502	1.00
138_L	305_V	0.501	1.00
104_K	107_A	0.501	1.00
425_F	434_I	0.501	1.00
60_G	64_S	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.8761	100	0.312	Contact Map
4djkA	2	0.916	100	0.313	Contact Map
3giaA	1	0.8866	100	0.366	Contact Map
3dh4A	3	0.8803	98.9	0.86	Contact Map
2xq2A	2	0.8739	98.8	0.862	Contact Map
2jlnA	1	0.8866	98.4	0.879	Contact Map
2a65A	2	0.9265	98.2	0.885	Contact Map
4xp4A	1	0.9349	97.9	0.893	Contact Map
4wgvA	2	0.7752	97.6	0.9	Contact Map
4us3A	1	0.8382	97.3	0.906	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0138 seconds.