GREMLIN Database
YBJX - Uncharacterized protein YbjX
UniProt: P75829 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13693
Length: 330 (285)
Sequences: 426 (306)
Seq/√Len: 18.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
308_A312_R7.3031.00
296_R318_D5.0991.00
224_F277_S4.3581.00
196_M233_A3.9071.00
118_Y167_D3.4971.00
310_Y317_L3.3571.00
270_D273_A3.3561.00
296_R306_K3.2910.99
120_L187_L3.2390.99
276_E288_Y3.1870.99
141_L154_L2.8110.98
306_K310_Y2.8020.98
298_E301_E2.7020.98
140_Q155_E2.6920.98
251_E272_N2.5900.97
216_A228_L2.5580.97
227_R277_S2.4260.96
306_K317_L2.2270.93
164_K255_Y2.2200.93
204_A213_I2.1700.92
296_R310_Y2.1300.91
181_A269_A2.1260.91
296_R314_Y2.1150.91
184_T200_G2.0950.91
315_E319_A2.0900.91
58_F61_R2.0640.90
224_F227_R2.0060.89
297_K310_Y1.9690.88
100_Y167_D1.9570.87
250_N270_D1.9410.87
306_K314_Y1.9270.87
310_Y314_Y1.9000.86
174_N178_I1.8830.85
275_W307_R1.8640.85
226_K250_N1.8160.83
165_E202_Q1.7750.82
255_Y260_Y1.7460.80
96_L111_L1.7230.79
221_H290_L1.7170.79
181_A224_F1.6890.78
310_Y318_D1.6530.77
187_L290_L1.6510.76
206_W214_Q1.6420.76
181_A229_V1.6220.75
214_Q232_A1.6130.75
200_G248_V1.5850.73
95_R167_D1.5750.73
78_H109_Q1.5580.72
252_T286_R1.5480.72
319_A323_Q1.5470.71
166_G203_G1.5410.71
97_H224_F1.5250.70
100_Y118_Y1.5180.70
72_W111_L1.5170.70
75_E274_F1.5170.70
58_F314_Y1.5110.70
199_G226_K1.5070.69
94_V100_Y1.5030.69
102_A287_H1.4900.69
280_G292_A1.4580.67
57_K61_R1.4540.67
196_M311_R1.4410.66
298_E302_I1.4380.66
97_H181_A1.4150.64
217_T222_G1.4120.64
304_S308_A1.4060.64
239_R280_G1.3960.63
110_L164_K1.3950.63
185_F202_Q1.3940.63
180_L210_H1.3920.63
95_R100_Y1.3690.62
57_K167_D1.3650.62
154_L232_A1.3470.60
253_H259_R1.3300.59
230_M274_F1.3290.59
172_F280_G1.3280.59
75_E119_A1.3230.59
167_D170_I1.3120.58
249_S276_E1.3020.58
226_K253_H1.2810.57
306_K318_D1.2680.56
247_A287_H1.2620.55
99_P255_Y1.2600.55
183_I242_V1.2600.55
297_K314_Y1.2560.55
91_R279_G1.2510.55
144_L320_I1.2510.55
228_L270_D1.2360.54
110_L262_D1.2120.52
87_T109_Q1.2060.52
224_F309_E1.2040.52
217_T306_K1.2000.52
317_L320_I1.1990.51
74_N276_E1.1900.51
164_K226_K1.1890.51
93_P224_F1.1890.51
198_I233_A1.1830.51
297_K306_K1.1800.50
210_H213_I1.1780.50
49_W86_L1.1740.50
299_I320_I1.1730.50
221_H312_R1.1650.49
247_A288_Y1.1590.49
102_A197_F1.1580.49
156_L272_N1.1540.49
69_S309_E1.1520.49
58_F297_K1.1460.48
204_A210_H1.1400.48
294_I326_T1.1330.47
106_S322_P1.1260.47
255_Y314_Y1.1190.47
57_K271_Y1.1130.46
126_S273_A1.1120.46
226_K274_F1.1030.46
85_L205_K1.1030.46
97_H269_A1.1030.46
163_D247_A1.1000.45
223_L231_E1.0960.45
140_Q177_G1.0940.45
246_I286_R1.0940.45
82_L211_Q1.0930.45
95_R286_R1.0870.45
83_N137_P1.0870.45
141_L306_K1.0740.44
225_P253_H1.0730.44
314_Y318_D1.0660.43
111_L115_R1.0530.43
107_R195_T1.0360.42
184_T214_Q1.0310.41
196_M237_A1.0280.41
139_L322_P1.0260.41
69_S306_K1.0260.41
272_N288_Y1.0180.40
280_G291_P1.0070.40
231_E268_H1.0060.40
238_Q321_Q1.0040.40
114_L288_Y1.0040.40
172_F229_V1.0030.40
314_Y317_L1.0010.39
247_A300_A1.0000.39
69_S73_M1.0000.39
209_P213_I0.9920.39
200_G253_H0.9720.38
249_S272_N0.9670.37
298_E314_Y0.9650.37
102_A105_L0.9510.37
117_H164_K0.9470.36
306_K309_E0.9470.36
253_H260_Y0.9440.36
95_R253_H0.9410.36
164_K182_E0.9340.36
231_E310_Y0.9320.35
95_R226_K0.9230.35
125_M280_G0.9170.35
180_L303_A0.9150.34
247_A280_G0.9150.34
250_N255_Y0.9070.34
137_P207_E0.9060.34
216_A224_F0.9000.34
182_E267_I0.8990.34
56_Q211_Q0.8970.33
216_A309_E0.8950.33
228_L320_I0.8900.33
304_S316_M0.8880.33
61_R304_S0.8850.33
308_A311_R0.8820.33
106_S293_Q0.8800.33
145_E149_G0.8750.32
242_V315_E0.8740.32
85_L290_L0.8710.32
44_R76_L0.8690.32
49_W89_Q0.8680.32
67_R326_T0.8640.32
70_V195_T0.8630.32
192_G243_E0.8630.32
220_C303_A0.8590.31
201_L250_N0.8520.31
96_L221_H0.8520.31
49_W93_P0.8490.31
162_M214_Q0.8440.31
322_P325_A0.8440.31
109_Q176_E0.8420.31
181_A231_E0.8410.30
83_N108_K0.8390.30
166_G202_Q0.8380.30
57_K118_Y0.8360.30
268_H274_F0.8360.30
201_L299_I0.8360.30
165_E217_T0.8350.30
218_K318_D0.8320.30
269_A316_M0.8320.30
138_G249_S0.8320.30
218_K287_H0.8260.30
58_F310_Y0.8200.29
138_G303_A0.8200.29
44_R54_F0.8170.29
61_R202_Q0.8160.29
223_L294_I0.8140.29
297_K312_R0.8080.29
222_G306_K0.8050.29
72_W240_L0.8050.29
184_T210_H0.8040.29
302_I305_K0.8020.28
249_S282_C0.8010.28
315_E326_T0.7970.28
182_E186_T0.7940.28
150_E218_K0.7900.28
116_Y189_E0.7890.28
71_E115_R0.7860.28
55_R220_C0.7850.28
296_R317_L0.7840.28
175_S284_A0.7840.28
195_T246_I0.7840.28
231_E306_K0.7820.27
112_E325_A0.7810.27
150_E192_G0.7790.27
222_G272_N0.7790.27
234_C294_I0.7750.27
258_L286_R0.7740.27
305_K308_A0.7710.27
249_S252_T0.7680.27
161_S252_T0.7680.27
64_I67_R0.7670.27
80_P295_A0.7660.27
45_P55_R0.7630.27
184_T225_P0.7620.26
250_N254_I0.7590.26
109_Q143_K0.7570.26
247_A275_W0.7560.26
138_G155_E0.7530.26
93_P196_M0.7530.26
150_E155_E0.7510.26
107_R236_F0.7490.26
139_L177_G0.7450.26
274_F316_M0.7450.26
135_N175_S0.7420.26
100_Y120_L0.7410.26
276_E282_C0.7400.25
89_Q93_P0.7390.25
62_S220_C0.7370.25
118_Y312_R0.7360.25
168_S173_R0.7360.25
253_H257_S0.7340.25
221_H308_A0.7260.25
94_V224_F0.7260.25
92_L233_A0.7240.25
234_C253_H0.7230.25
62_S121_L0.7200.25
169_T274_F0.7170.24
69_S181_A0.7160.24
99_P259_R0.7120.24
232_A280_G0.7100.24
106_S109_Q0.7090.24
227_R231_E0.7080.24
100_Y162_M0.7080.24
49_W101_L0.7070.24
138_G298_E0.7050.24
163_D224_F0.6960.23
95_R118_Y0.6940.23
170_I229_V0.6940.23
172_F313_R0.6930.23
224_F260_Y0.6930.23
104_N249_S0.6900.23
185_F302_I0.6900.23
241_Q326_T0.6900.23
125_M273_A0.6880.23
61_R98_R0.6880.23
164_K254_I0.6870.23
103_A107_R0.6870.23
244_Q295_A0.6850.23
181_A227_R0.6840.23
133_Y168_S0.6840.23
292_A326_T0.6830.23
48_F54_F0.6830.23
185_F233_A0.6820.23
170_I267_I0.6810.23
232_A315_E0.6800.23
197_F246_I0.6790.23
225_P272_N0.6770.23
84_V178_I0.6770.23
95_R259_R0.6760.23
176_E211_Q0.6760.23
138_G272_N0.6760.23
179_P288_Y0.6730.22
171_L179_P0.6730.22
140_Q289_R0.6710.22
142_A257_S0.6700.22
58_F259_R0.6690.22
129_E303_A0.6680.22
229_V316_M0.6670.22
127_A207_E0.6660.22
139_L243_E0.6650.22
272_N276_E0.6630.22
162_M287_H0.6610.22
316_M324_M0.6610.22
94_V226_K0.6610.22
255_Y259_R0.6600.22
223_L269_A0.6540.22
98_R226_K0.6500.21
110_L211_Q0.6500.21
218_K257_S0.6480.21
247_A253_H0.6470.21
196_M291_P0.6470.21
146_G216_A0.6470.21
70_V83_N0.6460.21
225_P271_Y0.6460.21
101_L287_H0.6440.21
80_P108_K0.6440.21
131_S279_G0.6430.21
235_L321_Q0.6430.21
60_L280_G0.6380.21
135_N214_Q0.6360.21
247_A281_V0.6350.21
55_R312_R0.6350.21
227_R274_F0.6330.21
97_H277_S0.6300.21
247_A298_E0.6290.21
165_E185_F0.6230.20
108_K215_N0.6230.20
140_Q215_N0.6230.20
99_P118_Y0.6220.20
231_E317_L0.6220.20
254_I259_R0.6170.20
90_P250_N0.6170.20
231_E263_K0.6160.20
164_K214_Q0.6150.20
207_E324_M0.6130.20
79_W156_L0.6120.20
149_G320_I0.6110.20
127_A324_M0.6100.20
228_L313_R0.6090.20
146_G285_E0.6070.20
107_R273_A0.6060.20
267_I270_D0.6030.20
297_K317_L0.6020.20
128_E243_E0.6020.20
151_Q295_A0.6010.19
253_H271_Y0.6000.19
226_K259_R0.6000.19
168_S288_Y0.5990.19
237_A292_A0.5980.19
238_Q328_F0.5970.19
294_I303_A0.5910.19
180_L274_F0.5910.19
60_L120_L0.5910.19
281_V323_Q0.5890.19
233_A328_F0.5880.19
248_V255_Y0.5870.19
92_L226_K0.5860.19
139_L230_M0.5850.19
162_M182_E0.5820.19
64_I238_Q0.5810.19
217_T224_F0.5790.19
58_F306_K0.5780.19
172_F252_T0.5760.19
249_S280_G0.5740.18
155_E173_R0.5740.18
197_F257_S0.5720.18
45_P113_A0.5700.18
84_V111_L0.5670.18
114_L318_D0.5630.18
58_F308_A0.5620.18
209_P212_E0.5580.18
74_N215_N0.5580.18
144_L154_L0.5580.18
256_R263_K0.5580.18
84_V119_A0.5550.18
95_R260_Y0.5550.18
112_E301_E0.5520.18
127_A137_P0.5520.18
237_A315_E0.5510.18
199_G316_M0.5500.18
216_A268_H0.5500.18
68_L112_E0.5490.18
54_F57_K0.5490.18
177_G325_A0.5490.18
259_R263_K0.5470.17
62_S273_A0.5470.17
49_W249_S0.5470.17
309_E314_Y0.5470.17
241_Q289_R0.5460.17
269_A311_R0.5460.17
88_R120_L0.5460.17
279_G308_A0.5450.17
54_F94_V0.5430.17
199_G248_V0.5410.17
142_A323_Q0.5410.17
149_G191_Q0.5410.17
110_L117_H0.5400.17
322_P326_T0.5390.17
117_H199_G0.5380.17
72_W229_V0.5360.17
167_D304_S0.5330.17
299_I304_S0.5320.17
236_F302_I0.5270.17
323_Q327_M0.5250.17
99_P306_K0.5250.17
213_I311_R0.5250.17
192_G247_A0.5240.17
154_L174_N0.5220.17
233_A265_G0.5210.17
140_Q143_K0.5200.17
184_T253_H0.5200.17
208_I324_M0.5180.16
102_A253_H0.5180.16
156_L204_A0.5170.16
99_P162_M0.5160.16
100_Y242_V0.5160.16
57_K249_S0.5150.16
185_F203_G0.5140.16
222_G304_S0.5140.16
139_L158_M0.5120.16
66_P146_G0.5120.16
99_P260_Y0.5100.16
146_G309_E0.5090.16
222_G271_Y0.5080.16
85_L204_A0.5080.16
92_L216_A0.5070.16
66_P288_Y0.5060.16
114_L172_F0.5060.16
118_Y275_W0.5050.16
78_H175_S0.5040.16
174_N180_L0.5040.16
99_P253_H0.5030.16
229_V312_R0.5020.16
175_S240_L0.5020.16
310_Y313_R0.5020.16
283_D289_R0.5000.16
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3n4hA 3 0.3212 11.5 0.974 Contact Map
4xpcA 1 0.1788 11 0.974 Contact Map
4mh8A 1 0.1788 10.3 0.975 Contact Map
4b2uA 1 0.1091 7.2 0.976 Contact Map
1gyxA 2 0.2091 7.1 0.976 Contact Map
3shpA 6 0.4939 6.5 0.977 Contact Map
4u9vB 1 0.5818 6.4 0.977 Contact Map
2m8vA 1 0.0909 6.3 0.977 Contact Map
3bz1X 1 0.103 6.1 0.977 Contact Map
2wkbA 3 0.3303 5.4 0.978 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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