GREMLIN Database
YBJD - Uncharacterized protein YbjD
UniProt: P75828 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13425
Length: 552 (501)
Sequences: 2576 (2364)
Seq/√Len: 105.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
5_R18_S8.0041.00
32_A258_G6.0551.00
13_G37_S5.5871.00
3_L78_L4.8221.00
9_V75_H4.1571.00
38_L339_L3.8871.00
7_E16_R3.8731.00
9_V16_R3.7441.00
32_A257_P3.5561.00
25_N337_C3.4601.00
2_I23_Q3.3411.00
7_E18_S3.2271.00
473_M476_F3.2111.00
25_N319_I3.1971.00
8_I14_I3.0481.00
389_E394_N2.8871.00
32_A261_S2.8001.00
395_E398_R2.7971.00
27_L321_T2.6991.00
513_K517_A2.6741.00
383_L414_F2.5611.00
189_L197_P2.4901.00
39_L321_T2.4711.00
5_R20_M2.4681.00
45_L78_L2.4551.00
14_I17_L2.4201.00
12_R59_D2.3381.00
293_E296_E2.2891.00
470_A474_E2.2561.00
11_F41_A2.2521.00
384_V411_V2.2251.00
377_F389_E2.2221.00
12_R40_D2.2211.00
470_A476_F2.1981.00
188_F192_E2.1841.00
6_V21_L2.1651.00
5_R79_T2.0871.00
153_L291_L2.0711.00
205_I209_L2.0581.00
423_V435_V2.0341.00
258_G261_S1.9911.00
27_L38_L1.9831.00
210_S214_Q1.9291.00
197_P200_L1.9231.00
190_A193_L1.9221.00
3_L80_F1.9221.00
293_E422_L1.9211.00
6_V38_L1.8961.00
27_L319_I1.8841.00
161_D164_F1.8541.00
392_V473_M1.8261.00
476_F481_G1.8151.00
21_L319_I1.8051.00
112_Y116_G1.7961.00
7_E77_I1.7901.00
258_G293_E1.7811.00
27_L337_C1.7751.00
8_I41_A1.7651.00
13_G346_V1.7631.00
42_L291_L1.7551.00
503_I506_K1.7221.00
471_L474_E1.7061.00
312_N335_H1.7031.00
193_L197_P1.6941.00
299_L303_M1.6911.00
55_F59_D1.6891.00
8_I38_L1.6801.00
300_H304_L1.6781.00
259_G263_R1.6711.00
194_S198_Q1.6621.00
379_R408_G1.6581.00
293_E321_T1.6581.00
386_G389_E1.6561.00
153_L158_R1.6321.00
472_D476_F1.6301.00
206_R210_S1.6231.00
43_T47_S1.6181.00
232_L236_R1.6171.00
72_H76_I1.6131.00
263_R296_E1.6051.00
390_T413_E1.6021.00
263_R297_T1.5811.00
339_L346_V1.5761.00
117_E120_E1.5691.00
473_M481_G1.5631.00
192_E196_H1.5311.00
26_V320_A1.5151.00
26_V331_T1.5131.00
155_P158_R1.5111.00
258_G263_R1.5021.00
501_R505_S1.4981.00
27_L339_L1.4951.00
190_A194_S1.4941.00
309_H313_L1.4901.00
472_D478_Y1.4851.00
156_V160_R1.4801.00
259_G262_Y1.4791.00
389_E392_V1.4791.00
414_F419_L1.4781.00
160_R263_R1.4731.00
472_D475_H1.4711.00
471_L476_F1.4671.00
263_R293_E1.4651.00
305_S374_S1.4641.00
426_A433_W1.4471.00
378_A410_K1.4461.00
153_L160_R1.4441.00
155_P160_R1.4361.00
179_V182_T1.4231.00
503_I508_I1.4221.00
209_L216_L1.4221.00
74_L82_E1.4191.00
11_F40_D1.4161.00
186_L193_L1.4141.00
390_T394_N1.4121.00
380_C432_E1.4051.00
186_L197_P1.3981.00
397_A400_C1.3831.00
382_L411_V1.3801.00
4_E81_R1.3731.00
32_A303_M1.3621.00
209_L213_V1.3621.00
419_L437_V1.3581.00
12_R258_G1.3571.00
108_H112_Y1.3521.00
76_I82_E1.3430.99
474_E481_G1.3410.99
252_R257_P1.3410.99
186_L196_H1.3390.99
308_W327_L1.3380.99
32_A264_V1.3290.99
473_M478_Y1.3270.99
96_L99_C1.3260.99
108_H111_F1.3230.99
267_L307_A1.3170.99
120_E123_S1.3140.99
188_F191_R1.3130.99
110_I116_G1.3120.99
257_P261_S1.3110.99
395_E399_Q1.3100.99
502_K506_K1.3070.99
184_R187_D1.3060.99
468_L476_F1.2950.99
208_G212_M1.2910.99
485_V488_R1.2800.99
258_G266_L1.2800.99
293_E378_A1.2780.99
177_P180_E1.2750.99
113_R116_G1.2740.99
191_R195_S1.2690.99
134_D137_P1.2620.99
302_I410_K1.2590.99
483_S487_H1.2590.99
222_E226_G1.2590.99
179_V183_A1.2560.99
194_S197_P1.2380.99
507_A512_S1.2330.99
478_Y481_G1.2330.99
15_N345_R1.2310.99
133_K136_H1.2250.99
22_E25_N1.2180.99
107_Y112_Y1.2170.99
382_L436_L1.2140.99
261_S303_M1.2060.99
78_L82_E1.1980.99
82_E88_H1.1950.99
207_Q210_S1.1940.99
471_L478_Y1.1920.99
3_L21_L1.1870.99
225_A228_A1.1870.99
369_R389_E1.1860.99
32_A301_P1.1820.99
37_S40_D1.1800.99
158_R169_R1.1790.99
103_C107_Y1.1730.99
126_T135_G1.1710.99
388_T391_W1.1710.99
80_F83_S1.1710.99
259_G298_R1.1700.99
154_M157_L1.1660.99
12_R37_S1.1650.99
4_E20_M1.1620.98
22_E337_C1.1610.98
187_D191_R1.1530.98
233_M236_R1.1530.98
257_P264_V1.1510.98
182_T185_Q1.1500.98
131_L135_G1.1480.98
292_I296_E1.1470.98
300_H303_M1.1450.98
477_M481_G1.1430.98
196_H199_N1.1400.98
259_G297_T1.1380.98
472_D481_G1.1360.98
72_H82_E1.1340.98
320_A327_L1.1320.98
110_I113_R1.1300.98
467_A476_F1.1280.98
503_I510_R1.1220.98
174_P177_P1.1180.98
153_L159_L1.1170.98
186_L200_L1.1120.98
263_R267_L1.1090.98
398_R403_H1.1060.98
226_G229_R1.1030.98
178_N182_T1.0920.98
80_F88_H1.0920.98
504_I508_I1.0910.98
242_R246_Y1.0900.98
148_R151_V1.0900.98
417_S437_V1.0870.98
31_N34_G1.0780.98
293_E429_M1.0740.97
500_L503_I1.0740.97
82_E86_G1.0720.97
159_L162_A1.0690.97
40_D43_T1.0640.97
373_P376_L1.0640.97
361_S365_S1.0620.97
185_Q190_A1.0610.97
189_L192_E1.0590.97
192_E195_S1.0570.97
474_E477_M1.0540.97
32_A290_L1.0490.97
205_I219_Y1.0460.97
475_H479_R1.0450.97
241_Q246_Y1.0420.97
55_F61_W1.0360.97
158_R163_R1.0350.97
231_R234_R1.0310.97
129_S133_K1.0290.97
129_S138_I1.0280.97
261_S264_V1.0270.97
374_S410_K1.0250.97
258_G264_V1.0250.97
260_R294_D1.0220.97
263_R304_L1.0200.97
304_L368_I1.0170.96
133_K137_P1.0160.96
211_A214_Q1.0150.96
186_L190_A1.0140.96
190_A197_P1.0130.96
6_V45_L1.0130.96
39_L291_L1.0120.96
72_H75_H1.0110.96
294_D323_N1.0100.96
369_R372_R1.0080.96
223_Q226_G1.0080.96
505_S508_I1.0080.96
156_V159_L1.0070.96
263_R266_L1.0020.96
107_Y110_I1.0000.96
230_Y233_M0.9980.96
215_L218_H0.9950.96
263_R389_E0.9940.96
186_L189_L0.9900.96
292_I311_L0.9860.96
190_A200_L0.9860.96
445_K449_T0.9850.96
97_E100_W0.9830.96
128_R132_D0.9820.96
311_L327_L0.9800.96
296_E301_P0.9790.96
303_M306_V0.9790.96
348_A351_L0.9780.96
31_N295_P0.9780.96
6_V19_L0.9730.95
377_F431_I0.9730.95
95_P99_C0.9720.95
387_E514_P0.9710.95
514_P518_I0.9670.95
378_A381_W0.9650.95
297_T304_L0.9640.95
36_S266_L0.9600.95
260_R323_N0.9440.95
30_E379_R0.9410.95
387_E413_E0.9390.94
443_G446_Y0.9390.94
387_E415_A0.9370.94
389_E437_V0.9300.94
267_L292_I0.9300.94
205_I208_G0.9280.94
24_N254_I0.9270.94
259_G266_L0.9250.94
78_L84_L0.9200.94
290_L318_R0.9190.94
160_R293_E0.9170.94
60_F336_V0.9160.94
209_L212_M0.9130.94
342_E345_R0.9130.94
133_K139_D0.9050.93
397_A407_E0.9050.93
158_R164_F0.9050.93
517_A521_A0.9050.93
368_I373_P0.9040.93
55_F60_F0.9040.93
124_V127_L0.9010.93
259_G264_V0.9010.93
111_F114_L0.9000.93
213_V220_F0.8990.93
254_I265_I0.8980.93
367_H372_R0.8970.93
109_R115_E0.8960.93
253_M256_R0.8940.93
208_G217_E0.8930.93
423_V426_A0.8930.93
212_M223_Q0.8920.93
22_E335_H0.8910.93
453_L456_N0.8900.93
77_I82_E0.8900.93
115_E121_D0.8870.93
272_T275_Q0.8860.93
230_Y236_R0.8850.93
296_E440_D0.8840.93
221_S224_G0.8830.92
184_R188_F0.8820.92
126_T130_F0.8780.92
304_L308_W0.8760.92
257_P422_L0.8750.92
191_R197_P0.8740.92
253_M257_P0.8720.92
421_P424_K0.8700.92
175_N178_N0.8660.92
259_G321_T0.8660.92
193_L200_L0.8630.92
12_R32_A0.8610.92
199_N202_D0.8600.91
257_P262_Y0.8600.91
470_A473_M0.8590.91
75_H82_E0.8590.91
402_H409_I0.8590.91
29_G35_K0.8550.91
454_L457_D0.8550.91
32_A300_H0.8520.91
235_R238_S0.8510.91
297_T367_H0.8510.91
176_V179_V0.8500.91
42_L46_L0.8490.91
373_P389_E0.8480.91
205_I217_E0.8460.91
187_D193_L0.8450.91
293_E391_W0.8400.90
114_L118_S0.8390.90
296_E378_A0.8390.90
212_M220_F0.8360.90
464_H468_L0.8340.90
126_T129_S0.8340.90
109_R116_G0.8330.90
178_N197_P0.8300.90
515_D518_I0.8290.90
468_L474_E0.8260.90
263_R437_V0.8260.90
472_D482_F0.8260.90
160_R166_R0.8250.90
370_F411_V0.8230.90
471_L475_H0.8230.90
132_D137_P0.8230.90
205_I215_L0.8210.89
205_I213_V0.8200.89
157_L160_R0.8200.89
217_E436_L0.8180.89
158_R162_A0.8150.89
424_K427_R0.8140.89
219_Y225_A0.8140.89
103_C116_G0.8120.89
520_V523_E0.8120.89
266_L293_E0.8110.89
257_P263_R0.8090.89
205_I220_F0.8090.89
112_Y120_E0.8080.89
129_S134_D0.8060.89
106_G120_E0.8050.89
514_P517_A0.8040.88
84_L87_R0.8030.88
252_R256_R0.8030.88
304_L324_S0.8030.88
4_E79_T0.8020.88
296_E386_G0.8020.88
94_R99_C0.7990.88
264_V367_H0.7980.88
521_A524_A0.7970.88
503_I511_S0.7950.88
221_S225_A0.7940.88
263_R298_R0.7920.88
383_L419_L0.7920.88
363_R389_E0.7910.88
447_A450_V0.7900.88
189_L196_H0.7890.88
382_L404_F0.7880.87
300_H368_I0.7870.87
216_L220_F0.7860.87
339_L348_A0.7860.87
205_I216_L0.7860.87
483_S486_F0.7840.87
380_C434_H0.7840.87
451_R456_N0.7820.87
317_Q412_I0.7820.87
254_I257_P0.7810.87
312_N336_V0.7810.87
382_L393_I0.7810.87
449_T452_S0.7780.87
209_L226_G0.7780.87
482_F486_F0.7770.87
191_R196_H0.7740.87
43_T46_L0.7730.86
112_Y115_E0.7720.86
209_L223_Q0.7720.86
47_S291_L0.7710.86
12_R293_E0.7710.86
112_Y117_E0.7700.86
309_H330_L0.7690.86
388_T514_P0.7630.86
206_R212_M0.7620.86
329_S372_R0.7590.85
369_R377_F0.7590.85
311_L320_A0.7580.85
293_E437_V0.7580.85
448_A452_S0.7570.85
449_T453_L0.7570.85
177_P182_T0.7570.85
118_S121_D0.7560.85
297_T300_H0.7560.85
259_G388_T0.7530.85
57_R60_F0.7530.85
296_E389_E0.7530.85
176_V181_V0.7520.85
31_N300_H0.7520.85
103_C106_G0.7520.85
470_A481_G0.7510.85
208_G215_L0.7490.85
103_C109_R0.7490.85
450_V453_L0.7470.85
328_L437_V0.7450.84
205_I212_M0.7420.84
448_A451_R0.7420.84
264_V303_M0.7410.84
160_R163_R0.7410.84
258_G436_L0.7400.84
195_S496_V0.7400.84
519_E523_E0.7380.84
109_R113_R0.7370.84
130_F134_D0.7360.84
130_F136_H0.7360.84
414_F422_L0.7360.84
392_V396_L0.7350.84
111_F116_G0.7350.84
388_T473_M0.7330.83
213_V217_E0.7300.83
293_E302_I0.7300.83
383_L422_L0.7300.83
469_P474_E0.7280.83
501_R507_A0.7280.83
292_I328_L0.7260.83
173_V182_T0.7240.83
216_L223_Q0.7240.83
519_E522_M0.7210.82
327_L331_T0.7180.82
467_A473_M0.7160.82
189_L193_L0.7150.82
303_M429_M0.7120.82
11_F258_G0.7100.81
388_T419_L0.7100.81
146_Q149_H0.7080.81
506_K509_H0.7080.81
419_L439_G0.7080.81
184_R194_S0.7070.81
31_N35_K0.7070.81
137_P141_E0.7040.81
472_D477_M0.7040.81
187_D194_S0.7040.81
508_I511_S0.7030.81
495_N502_K0.7030.81
213_V216_L0.7010.81
264_V327_L0.7000.81
403_H406_A0.6990.80
156_V161_D0.6990.80
191_R198_Q0.6980.80
364_I376_L0.6980.80
232_L238_S0.6970.80
127_L136_H0.6960.80
397_A404_F0.6960.80
147_A158_R0.6950.80
72_H79_T0.6930.80
254_I261_S0.6920.80
243_S246_Y0.6920.80
128_R136_H0.6910.80
383_L426_A0.6900.80
37_S346_V0.6900.80
128_R134_D0.6900.80
78_L83_S0.6890.79
32_A263_R0.6890.79
127_L133_K0.6880.79
153_L156_V0.6870.79
381_W431_I0.6860.79
204_Q209_L0.6850.79
296_E412_I0.6850.79
109_R118_S0.6850.79
217_E229_R0.6840.79
36_S304_L0.6830.79
103_C108_H0.6830.79
469_P473_M0.6830.79
273_L321_T0.6830.79
209_L228_A0.6810.79
187_D197_P0.6810.79
142_D145_D0.6800.79
236_R239_N0.6800.79
309_H398_R0.6790.78
396_L532_V0.6790.78
32_A417_S0.6790.78
499_N502_K0.6770.78
264_V307_A0.6760.78
14_I45_L0.6760.78
308_W404_F0.6760.78
385_E438_D0.6750.78
129_S132_D0.6730.78
240_E246_Y0.6680.77
216_L222_E0.6680.77
43_T291_L0.6670.77
73_H76_I0.6670.77
105_D111_F0.6660.77
135_G138_I0.6660.77
346_V349_W0.6650.77
419_L422_L0.6640.77
158_R161_D0.6640.77
106_G116_G0.6630.77
258_G317_Q0.6570.76
36_S389_E0.6560.76
272_T276_A0.6560.76
106_G115_E0.6540.76
183_A187_D0.6540.76
266_L298_R0.6530.76
37_S240_E0.6520.76
82_E87_R0.6500.75
296_E377_F0.6500.75
303_M329_S0.6470.75
326_E329_S0.6460.75
113_R122_G0.6460.75
126_T132_D0.6460.75
113_R117_E0.6460.75
151_V364_I0.6460.75
185_Q189_L0.6450.75
131_L134_D0.6440.75
474_E478_Y0.6430.75
154_M166_R0.6420.75
125_M129_S0.6380.74
33_W339_L0.6380.74
293_E436_L0.6380.74
81_R149_H0.6380.74
208_G216_L0.6370.74
470_A479_R0.6360.74
501_R504_I0.6350.74
207_Q211_A0.6350.74
105_D112_Y0.6330.73
320_A416_Q0.6320.73
475_H481_G0.6310.73
46_L296_E0.6310.73
319_I337_C0.6310.73
30_E300_H0.6280.73
499_N506_K0.6280.73
261_S389_E0.6260.73
504_I512_S0.6250.73
499_N508_I0.6250.73
383_L437_V0.6240.72
268_G273_L0.6230.72
26_V298_R0.6210.72
17_L20_M0.6200.72
116_G119_A0.6190.72
469_P477_M0.6180.72
113_R118_S0.6160.71
25_N293_E0.6150.71
272_T311_L0.6150.71
290_L295_P0.6150.71
76_I80_F0.6150.71
368_I374_S0.6150.71
79_T82_E0.6140.71
55_F74_L0.6130.71
119_A122_G0.6130.71
220_F223_Q0.6110.71
325_G373_P0.6100.71
308_W329_S0.6100.71
298_R419_L0.6100.71
174_P178_N0.6090.71
497_P503_I0.6080.70
185_Q197_P0.6070.70
37_S390_T0.6060.70
112_Y118_S0.6060.70
128_R135_G0.6060.70
383_L411_V0.6050.70
29_G34_G0.6040.70
105_D108_H0.6000.69
8_I74_L0.5970.69
3_L45_L0.5970.69
111_F118_S0.5970.69
213_V223_Q0.5950.69
57_R61_W0.5930.69
453_L457_D0.5930.69
20_M25_N0.5930.69
298_R391_W0.5920.68
224_G229_R0.5910.68
451_R465_L0.5910.68
75_H78_L0.5900.68
497_P500_L0.5890.68
217_E224_G0.5890.68
507_A511_S0.5870.68
162_A165_M0.5870.68
126_T136_H0.5850.68
369_R373_P0.5840.67
112_Y119_A0.5840.67
364_I368_I0.5830.67
442_A445_K0.5820.67
503_I512_S0.5820.67
296_E429_M0.5790.67
392_V395_E0.5780.67
166_R169_R0.5780.67
321_T392_V0.5770.67
54_H60_F0.5770.67
303_M331_T0.5770.67
347_A449_T0.5770.67
215_L224_G0.5760.66
304_L425_F0.5760.66
148_R152_R0.5760.66
302_I377_F0.5760.66
377_F417_S0.5750.66
94_R97_E0.5750.66
322_T510_R0.5740.66
443_G450_V0.5730.66
262_Y266_L0.5720.66
175_N180_E0.5710.66
513_K516_L0.5700.66
116_G121_D0.5690.65
500_L504_I0.5690.65
389_E473_M0.5680.65
124_V129_S0.5680.65
180_E183_A0.5680.65
297_T370_F0.5670.65
378_A389_E0.5670.65
163_R166_R0.5660.65
212_M224_G0.5660.65
265_I437_V0.5660.65
156_V163_R0.5650.65
486_F489_M0.5650.65
298_R437_V0.5640.65
156_V167_R0.5630.65
76_I85_P0.5630.65
264_V268_G0.5630.65
189_L194_S0.5600.64
476_F479_R0.5590.64
171_G174_P0.5570.64
177_P181_V0.5550.64
128_R133_K0.5550.64
308_W331_T0.5550.64
94_R100_W0.5550.64
176_V182_T0.5550.64
148_R167_R0.5540.63
32_A259_G0.5540.63
209_L220_F0.5540.63
123_S214_Q0.5500.63
366_F518_I0.5500.63
188_F214_Q0.5500.63
216_L219_Y0.5490.63
301_P325_G0.5490.63
175_N179_V0.5480.63
253_M429_M0.5480.63
60_F74_L0.5480.63
515_D524_A0.5460.62
310_L327_L0.5460.62
104_T119_A0.5460.62
223_Q228_A0.5450.62
143_I146_Q0.5440.62
174_P180_E0.5440.62
104_T108_H0.5430.62
215_L222_E0.5430.62
165_M168_I0.5420.62
191_R194_S0.5420.62
329_S371_N0.5420.62
325_G370_F0.5410.62
293_E325_G0.5400.61
364_I373_P0.5390.61
96_L163_R0.5390.61
241_Q245_R0.5390.61
86_G138_I0.5350.61
515_D519_E0.5350.61
376_L425_F0.5350.61
333_V337_C0.5330.60
2_I22_E0.5320.60
143_I147_A0.5320.60
131_L345_R0.5310.60
383_L433_W0.5300.60
523_E532_V0.5300.60
300_H330_L0.5300.60
193_L228_A0.5290.60
235_R239_N0.5290.60
30_E40_D0.5280.60
101_T113_R0.5270.60
131_L136_H0.5270.60
426_A437_V0.5270.60
21_L25_N0.5260.59
43_T155_P0.5250.59
169_R173_V0.5230.59
132_D135_G0.5220.59
80_F84_L0.5220.59
266_L321_T0.5210.59
215_L225_A0.5210.59
349_W353_P0.5210.59
301_P372_R0.5210.59
63_P69_G0.5210.59
83_S87_R0.5200.59
259_G333_V0.5190.58
147_A152_R0.5180.58
476_F484_D0.5180.58
259_G304_L0.5170.58
10_G269_L0.5170.58
217_E220_F0.5170.58
163_R167_R0.5170.58
498_M502_K0.5150.58
377_F383_L0.5150.58
512_S515_D0.5150.58
219_Y223_Q0.5150.58
216_L221_S0.5140.58
206_R216_L0.5140.58
41_A55_F0.5140.58
262_Y298_R0.5130.58
19_L38_L0.5120.57
12_R335_H0.5110.57
82_E85_P0.5110.57
55_F311_L0.5110.57
204_Q219_Y0.5100.57
268_G274_L0.5100.57
221_S226_G0.5100.57
108_H116_G0.5090.57
216_L225_A0.5090.57
95_P100_W0.5080.57
257_P417_S0.5080.57
184_R196_H0.5080.57
156_V172_T0.5070.57
151_V158_R0.5070.57
206_R393_I0.5060.57
383_L423_V0.5060.57
288_P316_L0.5060.57
302_I308_W0.5050.56
501_R508_I0.5050.56
124_V133_K0.5050.56
1_M80_F0.5040.56
179_V197_P0.5030.56
204_Q216_L0.5020.56
375_S381_W0.5020.56
10_G396_L0.5010.56
495_N498_M0.5010.56
46_L291_L0.5010.56
221_S227_Q0.5000.56
215_L223_Q0.5000.56
105_D120_E0.5000.56
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4i99A 2 0.5779 100 0.706 Contact Map
3qktA 2 0.5707 100 0.716 Contact Map
3zgxA 2 0.5417 100 0.719 Contact Map
3auyA 2 0.587 99.9 0.729 Contact Map
4abyA 1 0.6123 99.9 0.732 Contact Map
4ad8A 1 0.5906 99.9 0.735 Contact Map
1w1wA 2 0.5054 99.9 0.746 Contact Map
4ux3A 1 0.5688 99.9 0.757 Contact Map
1e69A 1 0.4692 99.9 0.761 Contact Map
3qf7A 2 0.567 99.9 0.761 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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