LTAE - ECOLI - GREMLIN Contacts

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LTAE - Low specificity L-threonine aldolase

UniProt:	P75823	Sequences: MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAAELSGKEAAIFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLFEAGGAAVLGSIQPQPIDAAADGTLPLDKVAMKIKPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAIRWRKMTGGGMRQSGILAAAGIYALKNNVARLQEDHDNAAWMAEQLREAGADVMRQDTNMLFVRVGEENAAALGEYMKARNVLINASPIVRLVTHLDVSREQLAEVAAHWRAFLAR	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13690
Length:	333 (297)
Sequences:	21386 (14439)
Seq/√Len:	837.8

ECOLI - LTAE KBL BIOF SUFS CSDA ISCS SERC
BACSU - BIOF1 BIOF2 PUCG ISCS2 SUFS ISCS1 YAAO SPEA YCBU ISCS SERC
HALSA - Q9HMP3 CSD Q9HMR6 MFNA Q9HR11
SULSO - Q97VM5 Q97ZK0 Q97WK1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
258_W	321_A	3.737	1.00
153_W	157_R	3.491	1.00
262_Q	324_A	3.415	1.00
258_W	317_R	3.297	1.00
117_A	158_E	3.282	1.00
42_Y	243_K	3.057	1.00
42_Y	239_I	3.055	1.00
297_R	329_A	3.035	1.00
145_P	148_Y	2.927	1.00
251_E	255_N	2.620	1.00
153_W	163_L	2.529	1.00
104_D	115_K	2.434	1.00
262_Q	265_E	2.426	1.00
157_R	187_Y	2.424	1.00
115_K	118_M	2.414	1.00
75_E	101_Q	2.297	1.00
167_G	191_F	2.285	1.00
193_I	206_L	2.266	1.00
133_L	156_T	2.232	1.00
254_D	317_R	2.212	1.00
258_W	262_Q	2.205	1.00
137_N	170_I	2.178	1.00
80_Q	104_D	2.137	1.00
113_L	155_F	2.127	1.00
115_K	119_K	2.125	1.00
117_A	155_F	2.097	1.00
180_E	183_E	2.085	1.00
240_Y	243_K	1.998	1.00
262_Q	321_A	1.983	1.00
117_A	159_R	1.971	1.00
316_S	319_Q	1.951	1.00
117_A	121_K	1.873	1.00
266_A	328_R	1.871	1.00
322_E	326_H	1.811	1.00
112_P	115_K	1.802	1.00
250_Q	254_D	1.760	1.00
257_A	261_E	1.757	1.00
135_L	152_A	1.751	1.00
293_Y	296_A	1.714	1.00
148_Y	154_E	1.711	1.00
255_N	317_R	1.705	1.00
259_M	311_T	1.703	1.00
132_L	164_H	1.671	1.00
195_L	238_G	1.630	1.00
297_R	326_H	1.628	1.00
43_A	206_L	1.622	1.00
309_L	323_V	1.611	1.00
154_E	158_E	1.597	1.00
239_I	243_K	1.594	1.00
261_E	265_E	1.550	1.00
75_E	78_V	1.547	1.00
116_V	152_A	1.529	1.00
209_G	214_I	1.522	1.00
322_E	325_A	1.521	1.00
170_I	191_F	1.507	1.00
135_L	139_H	1.503	1.00
165_V	188_C	1.485	1.00
218_I	221_R	1.484	1.00
156_T	163_L	1.481	1.00
74_E	129_R	1.470	1.00
113_L	148_Y	1.451	1.00
269_D	281_R	1.415	1.00
219_R	222_K	1.414	1.00
157_R	189_D	1.412	1.00
75_E	129_R	1.403	1.00
42_Y	246_V	1.402	1.00
240_Y	244_N	1.401	1.00
52_A	208_V	1.399	1.00
101_Q	119_K	1.394	1.00
147_E	154_E	1.374	1.00
41_D	45_E	1.369	1.00
155_F	159_R	1.365	1.00
77_I	119_K	1.363	1.00
74_E	131_K	1.359	1.00
227_G	230_Q	1.344	1.00
38_A	239_I	1.344	1.00
256_A	260_A	1.343	1.00
156_T	161_L	1.339	1.00
251_E	254_D	1.327	1.00
114_D	117_A	1.325	1.00
45_E	246_V	1.315	1.00
75_E	99_Q	1.306	1.00
69_H	190_S	1.305	1.00
286_N	289_A	1.300	1.00
164_H	192_T	1.295	1.00
133_L	161_L	1.294	1.00
266_A	324_A	1.294	1.00
259_M	320_L	1.292	1.00
293_Y	297_R	1.291	1.00
301_I	309_L	1.279	1.00
199_L	312_H	1.273	1.00
147_E	185_T	1.266	1.00
242_L	246_V	1.265	1.00
205_S	208_V	1.263	1.00
260_A	264_R	1.258	1.00
301_I	307_V	1.257	1.00
262_Q	266_A	1.254	1.00
75_E	128_A	1.242	1.00
133_L	152_A	1.241	1.00
225_G	228_M	1.239	1.00
291_G	303_A	1.239	1.00
249_L	253_H	1.227	1.00
50_E	211_R	1.221	1.00
61_A	192_T	1.208	1.00
147_E	183_E	1.200	1.00
41_D	44_A	1.193	1.00
38_A	42_Y	1.191	1.00
135_L	165_V	1.186	1.00
153_W	187_Y	1.175	1.00
120_I	155_F	1.174	1.00
248_R	252_D	1.165	1.00
114_D	118_M	1.159	1.00
218_I	222_K	1.152	1.00
228_M	231_S	1.151	1.00
37_N	41_D	1.147	1.00
66_L	134_S	1.147	1.00
262_Q	328_R	1.141	1.00
167_G	170_I	1.140	1.00
280_V	309_L	1.136	1.00
71_E	74_E	1.135	1.00
317_R	321_A	1.135	1.00
117_A	148_Y	1.132	1.00
236_A	239_I	1.132	1.00
65_A	190_S	1.127	1.00
54_F	57_T	1.125	1.00
55_L	58_G	1.122	1.00
217_A	222_K	1.119	1.00
262_Q	325_A	1.115	1.00
295_K	300_L	1.113	1.00
225_G	229_R	1.110	1.00
253_H	257_A	1.104	1.00
226_G	229_R	1.103	1.00
217_A	221_R	1.101	1.00
116_V	120_I	1.098	1.00
241_A	245_N	1.093	1.00
299_V	322_E	1.087	1.00
121_K	159_R	1.083	1.00
154_E	187_Y	1.074	1.00
171_F	193_I	1.071	1.00
292_E	296_A	1.070	1.00
231_S	234_L	1.065	1.00
120_I	161_L	1.064	1.00
41_D	52_A	1.063	1.00
34_P	38_A	1.061	1.00
75_E	130_T	1.054	1.00
217_A	220_W	1.052	1.00
271_M	281_R	1.049	1.00
259_M	263_L	1.045	1.00
65_A	164_H	1.044	1.00
134_S	164_H	1.035	1.00
62_N	164_H	1.035	1.00
205_S	209_G	1.034	1.00
44_A	52_A	1.033	1.00
188_C	191_F	1.027	1.00
258_W	320_L	1.026	1.00
78_V	82_A	1.021	1.00
269_D	283_G	1.021	1.00
93_A	100_P	1.020	1.00
292_E	295_K	1.016	1.00
289_A	292_E	1.012	1.00
62_N	66_L	1.011	1.00
299_V	323_V	1.011	1.00
190_S	213_Y	1.010	1.00
51_A	211_R	1.007	1.00
236_A	240_Y	1.005	1.00
55_L	61_A	0.996	1.00
261_E	264_R	0.992	1.00
247_A	250_Q	0.989	1.00
206_L	209_G	0.987	1.00
240_Y	245_N	0.971	1.00
255_N	258_W	0.968	1.00
75_E	121_K	0.962	1.00
177_Y	183_E	0.957	1.00
325_A	329_A	0.955	1.00
47_S	208_V	0.948	1.00
318_E	321_A	0.944	1.00
226_G	230_Q	0.944	1.00
211_R	215_K	0.944	1.00
120_I	159_R	0.940	1.00
57_T	60_Q	0.938	1.00
138_T	275_T	0.938	1.00
248_R	251_E	0.937	1.00
294_M	326_H	0.936	1.00
121_K	129_R	0.932	1.00
265_E	328_R	0.932	1.00
153_W	188_C	0.928	1.00
195_L	200_G	0.922	1.00
116_V	133_L	0.918	1.00
138_T	170_I	0.916	1.00
42_Y	45_E	0.915	1.00
210_N	213_Y	0.913	1.00
289_A	293_Y	0.911	1.00
312_H	315_V	0.908	1.00
35_T	38_A	0.897	1.00
49_K	208_V	0.892	1.00
220_W	223_M	0.887	1.00
146_R	165_V	0.869	1.00
38_A	41_D	0.868	1.00
177_Y	180_E	0.867	1.00
82_A	85_Y	0.861	1.00
47_S	171_F	0.860	1.00
113_L	116_V	0.856	1.00
311_T	320_L	0.855	1.00
321_A	325_A	0.854	1.00
251_E	317_R	0.853	1.00
121_K	128_A	0.851	1.00
259_M	262_Q	0.850	1.00
42_Y	46_L	0.850	1.00
252_D	256_A	0.850	1.00
72_R	97_S	0.849	1.00
82_A	86_L	0.847	1.00
48_G	182_K	0.845	1.00
294_M	301_I	0.845	1.00
135_L	163_L	0.840	1.00
56_P	60_Q	0.840	1.00
55_L	221_R	0.837	1.00
63_L	67_L	0.834	1.00
249_L	252_D	0.834	1.00
155_F	158_E	0.833	1.00
178_G	183_E	0.833	1.00
75_E	79_G	0.831	1.00
39_L	235_A	0.821	1.00
195_L	206_L	0.818	1.00
222_K	225_G	0.812	1.00
70_C	132_L	0.812	1.00
189_D	210_N	0.811	1.00
274_D	277_M	0.811	1.00
233_I	237_A	0.810	1.00
226_G	231_S	0.805	1.00
36_V	235_A	0.803	1.00
109_G	269_D	0.802	1.00
39_L	239_I	0.800	1.00
80_Q	102_P	0.799	1.00
54_F	58_G	0.798	1.00
259_M	278_L	0.796	1.00
43_A	193_I	0.795	1.00
315_V	319_Q	0.794	1.00
50_E	210_N	0.792	1.00
248_R	313_L	0.792	1.00
260_A	278_L	0.790	1.00
62_N	85_Y	0.789	1.00
223_M	226_G	0.787	1.00
65_A	207_L	0.782	1.00
62_N	65_A	0.782	1.00
225_G	230_Q	0.782	1.00
255_N	320_L	0.775	1.00
209_G	213_Y	0.775	1.00
119_K	128_A	0.771	1.00
132_L	162_A	0.771	1.00
224_T	228_M	0.769	1.00
55_L	64_V	0.769	1.00
113_L	117_A	0.769	1.00
223_M	227_G	0.768	1.00
35_T	239_I	0.768	1.00
247_A	251_E	0.765	1.00
70_C	98_I	0.765	1.00
237_A	241_A	0.763	1.00
70_C	74_E	0.761	1.00
66_L	70_C	0.760	1.00
288_A	291_G	0.758	1.00
225_G	231_S	0.758	1.00
182_K	185_T	0.755	1.00
213_Y	216_R	0.754	1.00
254_D	258_W	0.754	1.00
288_A	292_E	0.753	1.00
77_I	116_V	0.752	1.00
258_W	261_E	0.750	1.00
157_R	163_L	0.750	1.00
103_I	119_K	0.747	1.00
323_V	327_W	0.747	1.00
241_A	244_N	0.746	1.00
290_L	307_V	0.746	1.00
93_A	98_I	0.742	1.00
164_H	190_S	0.738	1.00
282_V	290_L	0.736	1.00
299_V	326_H	0.735	1.00
323_V	326_H	0.729	1.00
32_D	36_V	0.727	1.00
37_N	40_Q	0.726	1.00
58_G	168_A	0.717	1.00
66_L	132_L	0.715	1.00
238_G	241_A	0.714	1.00
86_L	134_S	0.714	1.00
258_W	324_A	0.713	1.00
48_G	180_E	0.711	1.00
78_V	102_P	0.707	1.00
76_Y	93_A	0.707	1.00
32_D	37_N	0.704	1.00
176_A	183_E	0.702	1.00
163_L	188_C	0.702	1.00
47_S	193_I	0.702	1.00
84_N	88_E	0.701	1.00
321_A	324_A	0.700	1.00
171_F	199_L	0.698	1.00
221_R	224_T	0.697	1.00
256_A	278_L	0.697	1.00
103_I	116_V	0.695	1.00
21_M	24_P	0.694	1.00
217_A	226_G	0.694	1.00
222_K	226_G	0.693	1.00
260_A	273_Q	0.692	1.00
291_G	301_I	0.691	1.00
211_R	214_I	0.690	1.00
70_C	76_Y	0.689	1.00
287_A	305_P	0.689	1.00
318_E	322_E	0.688	1.00
324_A	328_R	0.687	1.00
259_M	309_L	0.685	1.00
239_I	242_L	0.684	1.00
171_F	198_G	0.684	1.00
162_A	190_S	0.681	1.00
28_D	32_D	0.681	1.00
287_A	303_A	0.677	1.00
153_W	156_T	0.673	1.00
203_V	207_L	0.673	1.00
111_L	116_V	0.672	1.00
268_A	271_M	0.667	1.00
179_C	182_K	0.664	1.00
263_L	327_W	0.664	1.00
221_R	225_G	0.664	1.00
276_N	279_F	0.663	1.00
251_E	313_L	0.663	1.00
113_L	145_P	0.662	1.00
224_T	227_G	0.661	1.00
63_L	95_L	0.658	1.00
88_E	222_K	0.657	1.00
141_G	270_V	0.653	1.00
320_L	323_V	0.652	1.00
325_A	328_R	0.651	1.00
121_K	158_E	0.644	1.00
28_D	31_G	0.642	1.00
291_G	295_K	0.641	1.00
181_L	184_I	0.640	1.00
152_A	163_L	0.639	1.00
299_V	302_N	0.637	1.00
319_Q	322_E	0.635	1.00
99_Q	121_K	0.632	1.00
71_E	95_L	0.632	1.00
326_H	329_A	0.630	1.00
137_N	191_F	0.629	1.00
44_A	49_K	0.628	1.00
242_L	245_N	0.627	1.00
111_L	144_L	0.627	1.00
77_I	130_T	0.627	1.00
227_G	231_S	0.626	1.00
71_E	96_G	0.625	1.00
180_E	184_I	0.623	1.00
219_R	223_M	0.618	1.00
259_M	323_V	0.615	1.00
254_D	257_A	0.612	1.00
222_K	227_G	0.610	1.00
86_L	89_A	0.609	1.00
116_V	155_F	0.607	1.00
131_K	162_A	0.605	1.00
85_Y	89_A	0.604	1.00
310_V	314_D	0.603	1.00
203_V	208_V	0.602	1.00
29_V	32_D	0.601	1.00
65_A	192_T	0.601	1.00
104_D	119_K	0.599	1.00
212_D	215_K	0.598	1.00
51_A	214_I	0.598	1.00
294_M	299_V	0.597	1.00
319_Q	323_V	0.596	1.00
67_L	95_L	0.593	1.00
128_A	131_K	0.593	1.00
253_H	256_A	0.593	1.00
137_N	167_G	0.589	1.00
179_C	183_E	0.587	1.00
277_M	280_V	0.587	1.00
69_H	162_A	0.586	1.00
216_R	220_W	0.585	1.00
218_I	223_M	0.585	1.00
290_L	293_Y	0.582	1.00
241_A	246_V	0.580	1.00
288_A	303_A	0.579	1.00
63_L	66_L	0.578	1.00
260_A	270_V	0.577	1.00
309_L	327_W	0.577	1.00
238_G	244_N	0.574	1.00
181_L	185_T	0.574	1.00
175_V	178_G	0.572	1.00
193_I	208_V	0.569	1.00
24_P	27_D	0.569	1.00
202_P	237_A	0.566	1.00
237_A	240_Y	0.565	1.00
100_P	103_I	0.565	1.00
224_T	230_Q	0.564	1.00
103_I	111_L	0.561	1.00
43_A	52_A	0.559	1.00
223_M	228_M	0.558	1.00
215_K	219_R	0.558	1.00
63_L	68_S	0.558	1.00
64_V	68_S	0.557	1.00
162_A	213_Y	0.556	1.00
320_L	324_A	0.556	1.00
137_N	144_L	0.555	1.00
263_L	324_A	0.552	1.00
172_N	175_V	0.551	1.00
79_G	105_A	0.551	1.00
154_E	157_R	0.550	1.00
239_I	244_N	0.548	1.00
296_A	299_V	0.548	1.00
178_G	181_L	0.548	1.00
266_A	325_A	0.546	1.00
51_A	209_G	0.542	1.00
59_T	63_L	0.542	1.00
43_A	195_L	0.541	1.00
113_L	152_A	0.541	1.00
118_M	127_F	0.541	1.00
135_L	146_R	0.541	1.00
240_Y	246_V	0.540	1.00
43_A	242_L	0.539	1.00
93_A	96_G	0.536	1.00
319_Q	324_A	0.535	1.00
46_L	179_C	0.532	1.00
112_P	117_A	0.529	1.00
238_G	242_L	0.529	1.00
107_A	110_T	0.529	1.00
252_D	255_N	0.528	1.00
136_E	140_N	0.527	1.00
84_N	134_S	0.527	1.00
33_D	37_N	0.525	1.00
35_T	236_A	0.523	1.00
232_G	235_A	0.522	1.00
290_L	294_M	0.521	1.00
183_E	186_Q	0.521	1.00
279_F	285_E	0.520	1.00
239_I	246_V	0.515	1.00
162_A	189_D	0.515	1.00
144_L	152_A	0.514	1.00
203_V	206_L	0.513	1.00
199_L	313_L	0.513	1.00
62_N	192_T	0.512	1.00
250_Q	253_H	0.511	1.00
138_T	143_V	0.509	1.00
101_Q	121_K	0.508	1.00
78_V	100_P	0.506	1.00
136_E	139_H	0.506	1.00
234_L	239_I	0.506	1.00
273_Q	276_N	0.505	1.00
279_F	306_I	0.505	1.00
165_V	191_F	0.504	1.00
315_V	320_L	0.503	1.00
235_A	239_I	0.501	1.00
67_L	71_E	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1jg8A	4	0.997	100	0.323	Contact Map
4lnjA	4	0.997	100	0.327	Contact Map
3wgcA	4	0.988	100	0.342	Contact Map
2w8tA	2	0.958	100	0.386	Contact Map
1v72A	4	0.979	100	0.398	Contact Map
3kkiA	2	0.9459	100	0.399	Contact Map
1fc4A	2	0.967	100	0.402	Contact Map
3wy7A	2	0.9429	100	0.404	Contact Map
3tqxA	2	0.967	100	0.407	Contact Map
1bs0A	2	0.9459	100	0.419	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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