GREMLIN Database
YBJT - Uncharacterized protein YbjT
UniProt: P75822 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13689
Length: 476 (467)
Sequences: 733 (474)
Seq/√Len: 21.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
221_H288_D5.7201.00
70_V94_V5.3641.00
224_A288_D5.2141.00
54_L74_V5.0361.00
69_T195_L4.9881.00
203_R275_A4.4391.00
32_A52_V4.1781.00
14_I184_L3.7581.00
452_M459_I3.5841.00
56_W59_N3.5331.00
186_N284_L3.5011.00
36_V51_K3.4661.00
7_V19_V3.4281.00
87_E128_A3.3351.00
99_R137_N3.3141.00
190_Y281_P3.1251.00
106_L138_V2.8120.99
134_R142_E2.7600.99
186_N282_Q2.6970.99
60_L93_N2.6890.99
84_I124_R2.6440.99
131_D135_E2.6190.99
289_D292_R2.5130.98
183_A285_I2.4440.98
141_T197_H2.4420.98
276_L280_I2.4390.98
88_R128_A2.3490.97
88_R132_I2.3310.97
421_F432_I2.3260.97
208_A271_A2.3190.97
221_H224_A2.3050.97
16_Q305_S2.3030.97
99_R136_A2.2990.97
64_L70_V2.2600.96
367_M370_A2.2580.96
225_V292_R2.2460.96
367_M371_I2.2440.96
61_P100_E2.2440.96
177_S268_D2.2430.96
176_R216_Q2.2320.96
337_S340_A2.2040.96
239_T250_I2.2020.96
85_A89_Q2.1640.95
4_R66_D2.1540.95
35_H38_R2.1270.95
4_R28_Q2.1260.95
287_F291_V2.1170.95
241_W245_W2.1170.95
400_E403_K2.1120.95
127_Q131_D2.0700.94
186_N189_H2.0590.94
171_P175_V2.0280.93
71_Y195_L1.9930.93
286_A289_D1.9910.93
277_R282_Q1.9900.93
88_R92_L1.9540.92
143_L194_L1.9430.92
247_L262_I1.9300.91
95_R138_V1.9260.91
4_R68_D1.8930.90
397_I408_L1.8920.90
357_G360_L1.8910.90
146_G271_A1.8800.90
253_V257_T1.8690.90
185_E293_S1.8660.90
30_L48_S1.8610.90
9_G12_G1.8610.90
133_L140_V1.8610.90
178_R268_D1.8520.89
106_L139_P1.8300.89
136_A140_V1.8290.89
425_D430_R1.8200.89
356_F462_G1.7990.88
175_V219_F1.7860.88
98_L106_L1.7620.87
245_W259_R1.7590.87
54_L90_V1.7550.87
62_A65_Q1.7500.87
113_Q144_R1.7490.87
83_F185_E1.7470.86
416_L439_H1.7460.86
321_Y326_K1.7390.86
68_D104_K1.7350.86
424_E431_T1.7340.86
187_L207_A1.7230.86
7_V29_I1.7150.85
452_M455_A1.7140.85
20_R26_G1.7120.85
334_T468_A1.7020.85
26_G29_I1.6550.83
216_Q220_E1.6540.83
168_V233_I1.6510.83
7_V188_L1.6510.83
248_N262_I1.6490.83
6_L67_I1.6400.83
248_N255_P1.6320.82
159_M287_F1.6250.82
21_T188_L1.6160.82
422_S433_D1.6120.82
110_S142_E1.6070.81
64_L94_V1.5930.81
59_N93_N1.5880.81
240_R246_F1.5760.80
338_L403_K1.5600.79
54_L87_E1.5240.78
275_A278_A1.5170.77
450_L453_I1.5160.77
170_T235_I1.5140.77
25_Q192_V1.4830.76
418_R434_V1.4790.76
285_I289_D1.4780.76
218_Q287_F1.4690.75
324_F332_V1.4420.74
21_T304_S1.4280.73
9_G15_G1.4140.72
168_V229_R1.4090.72
230_R354_Y1.3990.71
190_Y280_I1.3890.71
225_V288_D1.3800.70
413_A417_G1.3780.70
110_S130_A1.3700.70
24_Q46_N1.3650.69
169_L246_F1.3630.69
159_M446_L1.3610.69
395_K410_G1.3540.69
12_G15_G1.3530.69
129_T142_E1.3400.68
341_L468_A1.3360.68
423_L430_R1.3200.67
228_K231_W1.2980.65
255_P262_I1.2950.65
144_R204_I1.2910.65
136_A202_H1.2500.62
393_S413_A1.2500.62
60_L64_L1.2470.62
448_Y456_H1.2470.62
426_K431_T1.2450.62
180_T209_G1.2440.62
452_M457_L1.2400.62
57_P60_L1.2220.61
10_A29_I1.2210.61
33_A38_R1.2100.60
8_L94_V1.2090.60
410_G417_G1.2080.60
444_P447_F1.2070.60
92_L135_E1.2000.59
321_Y325_A1.1980.59
122_H126_R1.1960.59
12_G34_R1.1960.59
344_V352_E1.1890.58
98_L103_V1.1700.57
165_N247_L1.1660.57
194_L200_S1.1630.57
322_G328_A1.1610.57
273_D276_L1.1600.57
190_Y219_F1.1540.56
398_V404_Q1.1520.56
466_Q470_L1.1500.56
264_G437_F1.1460.56
180_T210_P1.1460.56
339_A345_V1.1420.55
186_N285_I1.1410.55
148_I187_L1.1360.55
203_R273_D1.1300.55
344_V467_I1.1180.54
243_S246_F1.1150.54
39_L468_A1.1090.53
273_D429_Y1.1060.53
28_Q48_S1.1030.53
134_R204_I1.0940.52
19_V192_V1.0880.52
164_Y226_S1.0860.52
358_N432_I1.0840.51
38_R262_I1.0800.51
209_G215_Y1.0770.51
129_T134_R1.0740.51
32_A148_I1.0720.51
432_I464_A1.0670.50
217_Q231_W1.0650.50
338_L429_Y1.0640.50
347_Q383_E1.0600.50
217_Q220_E1.0530.49
404_Q408_L1.0520.49
123_L180_T1.0510.49
36_V49_C1.0490.49
161_D327_Q1.0470.49
350_G378_G1.0420.49
161_D247_L1.0380.48
177_S266_K1.0370.48
357_G459_I1.0370.48
19_V47_V1.0310.48
329_G437_F1.0270.48
319_P322_G1.0250.47
393_S410_G1.0220.47
141_T200_S1.0140.47
424_E433_D1.0140.47
161_D252_S1.0080.46
209_G462_G1.0070.46
461_R465_K1.0020.46
277_R284_L1.0000.46
193_A289_D0.9980.46
394_W409_F0.9960.45
100_E352_E0.9960.45
99_R138_V0.9950.45
21_T192_V0.9900.45
60_L97_A0.9830.45
193_A196_D0.9790.44
171_P246_F0.9790.44
183_A209_G0.9770.44
77_M269_L0.9760.44
137_N198_P0.9750.44
128_A132_I0.9720.44
5_I24_Q0.9720.44
38_R311_A0.9660.43
19_V57_P0.9640.43
207_A276_L0.9620.43
274_T277_R0.9610.43
130_A142_E0.9540.43
169_L174_W0.9540.43
87_E90_V0.9520.43
60_L66_D0.9450.42
360_L389_D0.9440.42
453_I457_L0.9420.42
31_A243_S0.9420.42
271_A274_T0.9400.42
165_N446_L0.9400.42
176_R234_P0.9370.42
87_E257_T0.9360.41
444_P451_L0.9350.41
96_D99_R0.9350.41
156_F160_R0.9300.41
346_N401_P0.9280.41
304_S439_H0.9250.41
82_D121_D0.9240.41
20_R23_S0.9240.41
50_H61_P0.9240.41
264_G418_R0.9200.40
141_T194_L0.9190.40
322_G326_K0.9190.40
15_G222_F0.9190.40
348_I355_F0.9180.40
306_D389_D0.9180.40
281_P284_L0.9180.40
411_M448_Y0.9170.40
163_V222_F0.9140.40
161_D165_N0.9110.40
84_I121_D0.9080.40
143_L207_A0.9060.39
33_A239_T0.9040.39
19_V31_A0.9030.39
241_W244_V0.8990.39
44_L124_R0.8970.39
87_E327_Q0.8970.39
455_A459_I0.8970.39
166_L174_W0.8930.39
376_A443_M0.8920.39
287_F446_L0.8890.38
57_P96_D0.8870.38
130_A144_R0.8860.38
278_A451_L0.8850.38
123_L269_L0.8810.38
199_A202_H0.8800.38
444_P459_I0.8780.38
69_T90_V0.8720.37
334_T341_L0.8710.37
54_L110_S0.8710.37
365_A378_G0.8690.37
134_R140_V0.8670.37
9_G18_L0.8630.37
206_E271_A0.8630.37
52_V98_L0.8630.37
359_I458_F0.8630.37
98_L101_V0.8610.37
322_G325_A0.8600.37
291_V468_A0.8580.36
48_S227_G0.8570.36
213_L367_M0.8570.36
11_S330_F0.8560.36
141_T201_E0.8550.36
71_Y133_L0.8540.36
45_A192_V0.8530.36
376_A390_A0.8520.36
329_G332_V0.8480.36
57_P367_M0.8470.36
254_P342_W0.8470.36
377_K436_A0.8470.36
116_P267_H0.8460.36
23_S47_V0.8450.36
241_W263_Q0.8450.36
27_H67_I0.8440.36
171_P243_S0.8440.36
387_T401_P0.8430.35
5_I274_T0.8410.35
219_F434_V0.8410.35
4_R67_I0.8390.35
162_M242_I0.8390.35
334_T337_S0.8390.35
357_G437_F0.8370.35
285_I444_P0.8360.35
54_L63_L0.8360.35
130_A239_T0.8350.35
193_A280_I0.8350.35
365_A409_F0.8340.35
387_T398_V0.8330.35
347_Q385_L0.8300.35
165_N248_N0.8290.35
205_F271_A0.8290.35
245_W255_P0.8270.34
393_S438_W0.8270.34
409_F417_G0.8250.34
368_D373_H0.8250.34
48_S106_L0.8240.34
158_V406_T0.8230.34
5_I446_L0.8160.34
14_I71_Y0.8080.33
147_I262_I0.8070.33
12_G18_L0.8070.33
94_V248_N0.8050.33
377_K420_C0.8040.33
14_I70_V0.8030.33
424_E467_I0.7920.32
347_Q352_E0.7920.32
380_P385_L0.7910.32
18_L22_L0.7900.32
164_Y260_A0.7870.32
459_I467_I0.7860.32
59_N62_A0.7860.32
143_L210_P0.7850.32
224_A451_L0.7820.32
155_A207_A0.7810.32
206_E280_I0.7790.32
79_E288_D0.7760.31
141_T146_G0.7750.31
139_P202_H0.7750.31
117_H391_V0.7740.31
51_K216_Q0.7740.31
169_L242_I0.7720.31
14_I24_Q0.7710.31
345_V423_L0.7700.31
317_W416_L0.7700.31
189_H282_Q0.7680.31
197_H279_L0.7660.31
238_P244_V0.7640.31
433_D458_F0.7620.31
341_L344_V0.7610.31
418_R446_L0.7600.31
14_I57_P0.7600.31
57_P61_P0.7590.30
173_R278_A0.7570.30
67_I112_L0.7550.30
58_D99_R0.7530.30
17_H155_A0.7530.30
88_R225_V0.7510.30
146_G327_Q0.7510.30
321_Y324_F0.7510.30
137_N140_V0.7500.30
409_F438_W0.7480.30
141_T199_A0.7460.30
228_K235_I0.7440.30
126_R133_L0.7440.30
340_A404_Q0.7430.30
248_N259_R0.7420.29
221_H229_R0.7380.29
103_V142_E0.7350.29
9_G34_R0.7350.29
8_L32_A0.7330.29
123_L210_P0.7290.29
360_L363_T0.7270.29
45_A97_A0.7250.29
95_R99_R0.7240.28
31_A284_L0.7230.28
30_L342_W0.7230.28
63_L110_S0.7220.28
174_W246_F0.7200.28
80_G363_T0.7190.28
158_V219_F0.7190.28
81_G92_L0.7180.28
30_L451_L0.7170.28
161_D446_L0.7160.28
42_L360_L0.7160.28
258_A367_M0.7160.28
11_S452_M0.7150.28
107_I135_E0.7150.28
418_R437_F0.7150.28
180_T211_E0.7150.28
366_L370_A0.7140.28
154_A435_R0.7140.28
377_K390_A0.7140.28
348_I463_M0.7130.28
325_A328_A0.7120.28
233_I444_P0.7120.28
30_L66_D0.7120.28
161_D214_S0.7100.28
411_M456_H0.7100.28
255_P259_R0.7090.28
176_R444_P0.7090.28
166_L169_L0.7070.28
100_E290_A0.7050.27
77_M446_L0.7050.27
15_G103_V0.7010.27
159_M327_Q0.7010.27
276_L281_P0.7010.27
466_Q469_R0.7000.27
325_A342_W0.6990.27
92_L468_A0.6990.27
146_G260_A0.6990.27
147_I247_L0.6980.27
344_V466_Q0.6970.27
186_N296_K0.6960.27
19_V23_S0.6960.27
154_A261_L0.6950.27
290_A337_S0.6950.27
123_L126_R0.6950.27
147_I218_Q0.6940.27
337_S412_K0.6940.27
83_F91_A0.6940.27
187_L438_W0.6940.27
175_V232_L0.6940.27
262_I301_L0.6920.27
70_V111_S0.6910.27
85_A339_A0.6900.27
25_Q47_V0.6900.27
61_P93_N0.6890.27
290_A347_Q0.6880.27
123_L209_G0.6870.26
137_N202_H0.6870.26
247_L297_E0.6860.26
354_Y365_A0.6850.26
192_V319_P0.6840.26
15_G443_M0.6840.26
146_G179_T0.6820.26
225_V300_K0.6810.26
29_I208_A0.6810.26
54_L269_L0.6800.26
70_V451_L0.6800.26
238_P246_F0.6790.26
292_R389_D0.6790.26
136_A275_A0.6760.26
324_F328_A0.6760.26
287_F334_T0.6740.26
302_V457_L0.6740.26
417_G438_W0.6740.26
162_M246_F0.6730.26
171_P240_R0.6710.26
337_S423_L0.6710.26
422_S432_I0.6700.26
176_R231_W0.6690.26
130_A219_F0.6690.26
194_L276_L0.6650.25
264_G446_L0.6640.25
205_F341_L0.6620.25
169_L175_V0.6610.25
245_W248_N0.6610.25
122_H133_L0.6610.25
94_V133_L0.6590.25
40_A367_M0.6580.25
208_A211_E0.6580.25
62_A351_K0.6560.25
236_P249_V0.6560.25
96_D100_E0.6550.25
264_G332_V0.6520.25
38_R51_K0.6520.25
353_R365_A0.6510.25
264_G355_F0.6490.25
107_I339_A0.6490.25
11_S457_L0.6480.24
249_V367_M0.6480.24
241_W450_L0.6480.24
82_D149_V0.6480.24
85_A382_R0.6470.24
376_A382_R0.6460.24
365_A393_S0.6450.24
216_Q269_L0.6450.24
443_M450_L0.6420.24
332_V434_V0.6420.24
78_G132_I0.6410.24
25_Q212_V0.6410.24
351_K465_K0.6400.24
31_A55_S0.6400.24
362_Q366_L0.6390.24
87_E159_M0.6380.24
342_W346_N0.6380.24
24_Q331_T0.6370.24
17_H23_S0.6370.24
210_P239_T0.6360.24
63_L97_A0.6350.24
194_L271_A0.6350.24
79_E86_Q0.6340.24
99_R104_K0.6320.24
240_R420_C0.6310.24
148_I243_S0.6300.24
215_Y269_L0.6300.24
193_A269_L0.6290.24
292_R371_I0.6290.24
198_P343_Q0.6270.23
406_T420_C0.6270.23
427_G430_R0.6270.23
61_P292_R0.6260.23
146_G239_T0.6260.23
58_D65_Q0.6240.23
155_A158_V0.6240.23
111_S155_A0.6220.23
352_E470_L0.6210.23
457_L467_I0.6210.23
403_K441_H0.6210.23
168_V176_R0.6200.23
234_P239_T0.6180.23
275_A280_I0.6170.23
296_K370_A0.6160.23
428_D469_R0.6160.23
116_P276_L0.6150.23
319_P324_F0.6150.23
234_P243_S0.6140.23
97_A277_R0.6130.23
280_I284_L0.6120.23
264_G324_F0.6100.23
49_C434_V0.6100.23
5_I25_Q0.6100.23
449_W456_H0.6090.23
383_E461_R0.6080.23
63_L235_I0.6060.22
5_I362_Q0.6050.22
171_P233_I0.6050.22
341_L382_R0.6030.22
171_P238_P0.6020.22
189_H285_I0.6010.22
226_S328_A0.6000.22
71_Y360_L0.5960.22
422_S435_R0.5960.22
11_S195_L0.5950.22
363_T447_F0.5940.22
213_L218_Q0.5920.22
447_F469_R0.5910.22
209_G239_T0.5910.22
6_L367_M0.5900.22
365_A410_G0.5890.22
276_L279_L0.5890.22
93_N97_A0.5880.22
314_F317_W0.5870.22
279_L465_K0.5860.21
393_S409_F0.5860.21
229_R233_I0.5840.21
31_A280_I0.5840.21
70_V287_F0.5840.21
427_G469_R0.5830.21
338_L370_A0.5820.21
260_A303_N0.5820.21
403_K424_E0.5820.21
345_V453_I0.5820.21
85_A466_Q0.5810.21
118_E278_A0.5810.21
372_G394_W0.5800.21
60_L337_S0.5800.21
171_P306_D0.5790.21
404_Q413_A0.5780.21
194_L277_R0.5770.21
61_P65_Q0.5760.21
278_A367_M0.5750.21
340_A351_K0.5750.21
69_T363_T0.5740.21
418_R436_A0.5740.21
280_I402_E0.5730.21
155_A184_L0.5710.21
9_G13_Y0.5710.21
267_H393_S0.5690.21
453_I459_I0.5680.21
338_L348_I0.5680.21
57_P101_V0.5680.21
49_C402_E0.5680.21
18_L209_G0.5670.21
98_L102_P0.5670.21
29_I104_K0.5670.21
5_I229_R0.5670.21
376_A413_A0.5660.21
195_L297_E0.5620.20
94_V262_I0.5620.20
142_E204_I0.5610.20
54_L161_D0.5610.20
286_A292_R0.5610.20
32_A60_L0.5610.20
100_E256_T0.5610.20
14_I50_H0.5600.20
202_H275_A0.5600.20
13_Y18_L0.5590.20
157_E160_R0.5580.20
252_S321_Y0.5580.20
132_I135_E0.5570.20
146_G269_L0.5570.20
85_A88_R0.5560.20
363_T467_I0.5560.20
245_W401_P0.5560.20
262_I357_G0.5560.20
188_L302_V0.5550.20
164_Y184_L0.5550.20
222_F226_S0.5540.20
84_I143_L0.5540.20
378_G395_K0.5530.20
244_V248_N0.5520.20
30_L50_H0.5500.20
161_D271_A0.5490.20
152_G157_E0.5490.20
203_R397_I0.5480.20
268_D280_I0.5470.20
33_A301_L0.5470.20
29_I198_P0.5440.20
70_V232_L0.5420.20
126_R129_T0.5410.20
210_P414_P0.5410.20
41_K293_S0.5410.20
121_D306_D0.5410.20
368_D389_D0.5400.19
52_V441_H0.5390.19
217_Q462_G0.5390.19
349_G448_Y0.5380.19
105_Q226_S0.5380.19
96_D270_L0.5380.19
39_L175_V0.5380.19
143_L253_V0.5380.19
58_D363_T0.5370.19
243_S398_V0.5370.19
350_G379_R0.5370.19
297_E410_G0.5360.19
169_L232_L0.5360.19
143_L274_T0.5360.19
123_L127_Q0.5360.19
236_P374_K0.5360.19
61_P99_R0.5360.19
170_T243_S0.5350.19
46_N339_A0.5350.19
125_A129_T0.5350.19
190_Y284_L0.5340.19
436_A458_F0.5330.19
180_T244_V0.5330.19
84_I275_A0.5330.19
130_A175_V0.5330.19
74_V117_H0.5330.19
97_A387_T0.5320.19
368_D411_M0.5310.19
68_D103_V0.5310.19
240_R244_V0.5310.19
5_I27_H0.5290.19
28_Q46_N0.5290.19
74_V179_T0.5270.19
220_E230_R0.5270.19
409_F455_A0.5250.19
178_R213_L0.5240.19
180_T269_L0.5230.19
80_G110_S0.5230.19
422_S427_G0.5230.19
119_Q395_K0.5220.19
185_E303_N0.5220.19
36_V52_V0.5220.19
147_I161_D0.5220.19
189_H283_R0.5200.19
198_P340_A0.5200.19
57_P217_Q0.5190.19
350_G353_R0.5190.19
111_S162_M0.5190.19
73_L261_L0.5190.19
223_M373_H0.5180.19
212_V290_A0.5180.19
416_L433_D0.5170.18
410_G455_A0.5170.18
124_R362_Q0.5160.18
146_G330_F0.5160.18
190_Y276_L0.5160.18
244_V259_R0.5150.18
29_I367_M0.5150.18
47_V464_A0.5150.18
151_A185_E0.5150.18
11_S319_P0.5150.18
223_M287_F0.5140.18
37_D351_K0.5140.18
107_I127_Q0.5140.18
214_S389_D0.5130.18
61_P103_V0.5130.18
122_H145_A0.5130.18
4_R104_K0.5130.18
14_I94_V0.5130.18
180_T271_A0.5120.18
149_V260_A0.5110.18
393_S417_G0.5110.18
37_D40_A0.5110.18
339_A348_I0.5100.18
121_D249_V0.5090.18
328_A439_H0.5090.18
324_F397_I0.5080.18
361_W456_H0.5080.18
146_G266_K0.5080.18
155_A365_A0.5070.18
154_A206_E0.5070.18
76_S125_A0.5060.18
177_S269_L0.5050.18
244_V269_L0.5030.18
111_S125_A0.5020.18
378_G410_G0.5010.18
413_A438_W0.5010.18
174_W243_S0.5000.18
374_K378_G0.5000.18
107_I270_L0.5000.18
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2x4gA 2 0.5735 100 0.765 Contact Map
3wj7A 3 0.6239 100 0.769 Contact Map
3m2pA 2 0.5756 100 0.777 Contact Map
2zcuA 2 0.5651 100 0.78 Contact Map
2jl1A 2 0.5903 100 0.781 Contact Map
2pzmA 2 0.5987 100 0.783 Contact Map
3rufA 2 0.584 100 0.786 Contact Map
2q1sA 2 0.6071 100 0.786 Contact Map
2c5aA 2 0.6513 100 0.787 Contact Map
1sb8A 2 0.5945 100 0.787 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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