GREMLIN Database
YBJS - Uncharacterized protein YbjS
UniProt: P75821 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13688
Length: 337 (289)
Sequences: 58388 (41765)
Seq/√Len: 2456.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
8_A29_A3.0651.00
248_K319_D3.0151.00
214_A234_I2.6361.00
19_F213_H2.5981.00
88_L92_R2.5631.00
230_R305_R2.5291.00
69_T219_S2.4011.00
317_T320_E2.3471.00
232_Y309_E2.3261.00
30_T50_A2.2741.00
112_I215_M2.2501.00
19_F216_W2.2031.00
252_E323_E2.1841.00
19_F23_K2.1491.00
251_D319_D2.0961.00
213_H315_V2.0881.00
60_A64_L2.0291.00
243_R247_Q2.0231.00
54_E57_S2.0091.00
304_T308_E1.9861.00
72_H111_H1.9681.00
108_N162_R1.9651.00
128_K131_F1.9651.00
307_Q313_Q1.9411.00
168_P215_M1.9291.00
50_A57_S1.9241.00
71_W219_S1.9211.00
151_I163_F1.8941.00
213_H217_L1.8681.00
28_R46_E1.8631.00
4_L67_I1.8621.00
6_T72_H1.8591.00
166_L218_A1.8581.00
209_E324_K1.8491.00
248_K251_D1.8431.00
28_R48_V1.8391.00
28_R67_I1.8201.00
5_V17_V1.8151.00
55_L99_E1.7961.00
237_G307_Q1.7551.00
95_R150_V1.7321.00
241_T244_S1.7211.00
23_K216_W1.7161.00
172_F321_G1.6931.00
23_K220_Q1.6691.00
26_S46_E1.6231.00
95_R99_E1.6081.00
92_R95_R1.6081.00
145_A149_E1.5911.00
216_W220_Q1.5881.00
94_T147_S1.5741.00
207_Y324_K1.5721.00
53_T88_L1.5641.00
16_A212_V1.5491.00
87_D146_A1.5451.00
16_A71_W1.5231.00
19_F22_Q1.5111.00
68_D107_R1.5091.00
217_L221_E1.5071.00
303_I307_Q1.5061.00
28_R65_A1.5031.00
33_N47_F1.4881.00
16_A73_C1.4741.00
185_H189_H1.4621.00
323_E327_A1.4571.00
113_S117_L1.4551.00
306_A310_L1.4511.00
55_L96_R1.4411.00
248_K252_E1.4411.00
84_Q88_L1.4291.00
19_F212_V1.3981.00
17_V29_A1.3901.00
134_H145_A1.3891.00
61_K103_A1.3871.00
70_L101_A1.3831.00
12_L171_L1.3781.00
202_L239_H1.3631.00
73_C112_I1.3601.00
38_K41_E1.3591.00
62_V67_I1.3551.00
168_P211_A1.3381.00
155_S163_F1.3301.00
129_E305_R1.3271.00
18_E175_H1.3211.00
207_Y321_G1.3101.00
102_V159_P1.3091.00
149_E152_N1.3081.00
112_I168_P1.3001.00
244_S247_Q1.2881.00
62_V65_A1.2871.00
320_E323_E1.2831.00
111_H147_S1.2781.00
316_I324_K1.2621.00
230_R309_E1.2621.00
8_A17_V1.2561.00
25_I220_Q1.2561.00
194_L260_R1.2521.00
3_V25_I1.2521.00
98_G154_L1.2461.00
124_H131_F1.2361.00
166_L215_M1.2331.00
108_N164_T1.2231.00
71_W215_M1.2231.00
320_E324_K1.2221.00
152_N165_I1.2211.00
124_H128_K1.2191.00
90_N143_S1.2151.00
64_L67_I1.2081.00
99_E102_V1.2051.00
52_L93_A1.1931.00
186_M191_G1.1881.00
243_R261_S1.1881.00
57_S60_A1.1821.00
4_L30_T1.1721.00
118_Y233_N1.1661.00
140_F144_K1.1641.00
305_R309_E1.1631.00
72_H94_T1.1611.00
101_A109_F1.1581.00
192_S260_R1.1521.00
60_A63_M1.1411.00
150_V153_M1.1391.00
29_A45_A1.1301.00
169_Q301_L1.1281.00
142_R146_A1.1271.00
127_I131_F1.1221.00
208_Y212_V1.1221.00
97_L109_F1.1201.00
206_T211_A1.1191.00
111_H151_I1.1181.00
200_S241_T1.1081.00
200_S243_R1.1051.00
9_T31_G1.0871.00
303_I314_P1.0871.00
18_E22_Q1.0831.00
240_R318_L1.0771.00
128_K302_D1.0761.00
98_G109_F1.0761.00
111_H165_I1.0741.00
46_E65_A1.0721.00
20_L216_W1.0661.00
152_N231_V1.0631.00
250_I256_D1.0601.00
221_E226_L1.0591.00
19_F209_E1.0531.00
130_D305_R1.0471.00
265_P268_D1.0451.00
110_I166_L1.0431.00
167_R231_V1.0321.00
319_D323_E1.0301.00
247_Q250_I1.0301.00
52_L74_S1.0241.00
214_A306_A1.0171.00
92_R96_R1.0171.00
21_C44_G1.0161.00
3_V20_L1.0161.00
76_F89_A1.0131.00
14_R175_H1.0061.00
3_V69_T1.0051.00
240_R244_S1.0031.00
202_L298_D1.0021.00
62_V66_G0.9981.00
107_R162_R0.9941.00
21_C45_A0.9931.00
30_T57_S0.9891.00
253_L326_A0.9881.00
99_E103_A0.9861.00
204_D237_G0.9851.00
100_W104_W0.9831.00
239_H300_T0.9791.00
235_T301_L0.9741.00
15_N209_E0.9691.00
11_G173_G0.9691.00
101_A106_V0.9651.00
182_R186_M0.9611.00
34_E49_P0.9601.00
162_R228_S0.9601.00
152_N163_F0.9601.00
213_H316_I0.9571.00
96_R99_E0.9521.00
179_F183_L0.9501.00
217_L220_Q0.9431.00
89_A93_A0.9431.00
252_E326_A0.9421.00
324_K327_A0.9391.00
262_V267_L0.9381.00
33_N36_M0.9371.00
91_V146_A0.9311.00
87_D92_R0.9271.00
207_Y316_I0.9201.00
109_F151_I0.9191.00
6_T97_L0.9191.00
73_C215_M0.9171.00
213_H312_Y0.9161.00
171_L211_A0.9131.00
209_E316_I0.9081.00
87_D91_V0.9071.00
148_E167_R0.9051.00
102_V161_T0.9031.00
100_W103_A0.9021.00
185_H188_H0.9021.00
48_V64_L0.9011.00
167_R233_N0.9001.00
38_K42_K0.8971.00
61_K65_A0.8941.00
31_G47_F0.8921.00
98_G151_I0.8921.00
263_P266_M0.8911.00
11_G208_Y0.8901.00
264_Y268_D0.8881.00
99_E154_L0.8861.00
252_E319_D0.8861.00
239_H298_D0.8761.00
39_L42_K0.8731.00
232_Y305_R0.8711.00
182_R185_H0.8701.00
304_T307_Q0.8681.00
15_N18_E0.8671.00
15_N208_Y0.8661.00
32_R51_D0.8611.00
164_T218_A0.8601.00
152_N156_Q0.8591.00
33_N49_P0.8581.00
250_I255_I0.8531.00
192_S258_R0.8531.00
250_I257_C0.8521.00
210_N236_N0.8471.00
69_T108_N0.8451.00
316_I320_E0.8441.00
190_Y193_I0.8411.00
227_P230_R0.8401.00
96_R100_W0.8361.00
166_L234_I0.8321.00
115_P169_Q0.8251.00
15_N19_F0.8241.00
16_A20_L0.8211.00
262_V265_P0.8201.00
149_E153_M0.8171.00
217_L310_L0.8161.00
86_F143_S0.8131.00
17_V27_V0.8061.00
171_L206_T0.8021.00
21_C27_V0.8021.00
214_A312_Y0.8001.00
98_G150_V0.8001.00
235_T303_I0.7991.00
165_I231_V0.7981.00
264_Y267_L0.7981.00
244_S248_K0.7981.00
238_E317_T0.7981.00
25_I68_D0.7941.00
125_R131_F0.7941.00
199_G243_R0.7931.00
265_P269_M0.7901.00
213_H216_W0.7901.00
202_L241_T0.7871.00
172_F207_Y0.7871.00
76_F85_A0.7791.00
70_L97_L0.7791.00
146_A149_E0.7761.00
261_S264_Y0.7711.00
6_T74_S0.7701.00
305_R308_E0.7651.00
174_P324_K0.7631.00
113_S148_E0.7631.00
48_V65_A0.7621.00
94_T151_I0.7611.00
53_T89_A0.7591.00
72_H97_L0.7571.00
218_A310_L0.7561.00
55_L103_A0.7541.00
263_P267_L0.7541.00
257_C260_R0.7511.00
94_T98_G0.7501.00
252_E327_A0.7461.00
63_M104_W0.7461.00
262_V269_M0.7461.00
210_N213_H0.7441.00
61_K64_L0.7441.00
16_A215_M0.7421.00
115_P301_L0.7411.00
102_V154_L0.7401.00
261_S267_L0.7391.00
180_I183_L0.7381.00
76_F86_F0.7371.00
87_D143_S0.7331.00
237_G303_I0.7301.00
56_V60_A0.7281.00
69_T107_R0.7211.00
123_H131_F0.7191.00
26_S44_G0.7161.00
3_V71_W0.7151.00
60_A67_I0.7141.00
136_F141_A0.7131.00
217_L312_Y0.7131.00
247_Q251_D0.7091.00
154_L159_P0.7051.00
187_M250_I0.7051.00
24_G44_G0.7051.00
83_Q142_R0.7041.00
266_M269_M0.7031.00
85_A88_L0.7021.00
252_E322_I0.7011.00
129_E306_A0.7001.00
221_E227_P0.6961.00
261_S268_D0.6961.00
207_Y210_N0.6951.00
3_V219_S0.6931.00
262_V268_D0.6921.00
138_N141_A0.6921.00
70_L109_F0.6921.00
146_A150_V0.6901.00
82_T85_A0.6841.00
245_I318_L0.6821.00
248_K318_L0.6801.00
163_F229_G0.6741.00
256_D259_I0.6731.00
227_P309_E0.6721.00
218_A306_A0.6721.00
116_S141_A0.6711.00
14_R18_E0.6711.00
93_A96_R0.6691.00
48_V61_K0.6601.00
183_L186_M0.6541.00
240_R245_I0.6531.00
85_A89_A0.6531.00
316_I321_G0.6531.00
101_A105_G0.6531.00
168_P171_L0.6471.00
5_V20_L0.6461.00
30_T61_K0.6461.00
15_N212_V0.6461.00
307_Q314_P0.6391.00
62_V100_W0.6351.00
181_P185_H0.6341.00
142_R149_E0.6321.00
12_L211_A0.6281.00
184_A188_H0.6281.00
169_Q235_T0.6271.00
234_I306_A0.6251.00
28_R66_G0.6251.00
147_S151_I0.6231.00
51_D54_E0.6231.00
102_V160_Q0.6211.00
20_L219_S0.6191.00
139_E142_R0.6191.00
217_L311_G0.6171.00
61_K67_I0.6121.00
153_M158_N0.6121.00
174_P207_Y0.6101.00
62_V70_L0.6081.00
150_V154_L0.6071.00
117_L148_E0.6071.00
262_V266_M0.6061.00
212_V216_W0.6051.00
25_I69_T0.6041.00
110_I219_S0.5971.00
155_S229_G0.5961.00
110_I215_M0.5921.00
69_T110_I0.5921.00
126_D302_D0.5901.00
153_M156_Q0.5901.00
117_L167_R0.5891.00
23_K213_H0.5881.00
29_A47_F0.5841.00
55_L100_W0.5821.00
250_I253_L0.5801.00
4_L50_A0.5801.00
62_V104_W0.5801.00
184_A326_A0.5781.00
183_L187_M0.5771.00
194_L262_V0.5771.00
246_V250_I0.5741.00
263_P268_D0.5721.00
202_L300_T0.5711.00
250_I259_I0.5701.00
181_P184_A0.5691.00
261_S265_P0.5691.00
261_S266_M0.5681.00
143_S147_S0.5661.00
210_N315_V0.5661.00
128_K304_T0.5641.00
136_F145_A0.5621.00
315_V320_E0.5621.00
154_L161_T0.5601.00
4_L70_L0.5601.00
57_S61_K0.5591.00
60_A65_A0.5541.00
142_R153_M0.5521.00
191_G194_L0.5521.00
204_D236_N0.5511.00
87_D142_R0.5511.00
23_K217_L0.5511.00
240_R248_K0.5501.00
15_N175_H0.5501.00
165_I229_G0.5481.00
114_S117_L0.5471.00
101_A104_W0.5461.00
20_L24_G0.5451.00
24_G27_V0.5451.00
238_E319_D0.5451.00
75_S90_N0.5441.00
121_Y127_I0.5431.00
152_N155_S0.5411.00
123_H127_I0.5391.00
139_E143_S0.5381.00
259_I262_V0.5361.00
267_L270_I0.5361.00
72_H109_F0.5351.00
166_L214_A0.5341.00
65_A104_W0.5331.00
264_Y269_M0.5281.00
201_A242_L0.5271.00
17_V21_C0.5261.00
61_K104_W0.5261.00
126_D300_T0.5231.00
190_Y194_L0.5231.00
33_N37_G0.5231.00
64_L70_L0.5221.00
164_T226_L0.5221.00
18_E209_E0.5211.00
125_R298_D0.5201.00
151_I165_I0.5191.00
303_I312_Y0.5191.00
248_K322_I0.5181.00
204_D239_H0.5181.00
119_F135_R0.5101.00
306_A314_P0.5081.00
11_G15_N0.5081.00
179_F182_R0.5071.00
189_H192_S0.5071.00
110_I218_A0.5051.00
98_G102_V0.5051.00
148_E165_I0.5001.00
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3m2pA 2 0.8694 100 0.238 Contact Map
2c20A 2 0.908 100 0.242 Contact Map
2x4gA 2 0.8694 100 0.244 Contact Map
1sb8A 2 0.905 100 0.246 Contact Map
3rufA 2 0.8902 100 0.246 Contact Map
1rkxA 3 0.9021 100 0.247 Contact Map
1gy8A 2 0.9139 100 0.248 Contact Map
1orrA 3 0.8902 100 0.251 Contact Map
1udbA 2 0.9139 100 0.254 Contact Map
2bllA 2 0.9139 100 0.255 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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