YBJI - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

YBJI - Flavin mononucleotide phosphatase YbjI

UniProt:	P75809	Sequences: MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVASGNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFATVVEHLLTRPEVEIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQVQKALHEAIGDIMVSVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13678
Length:	271 (256)
Sequences:	10979 (8997)
Seq/√Len:	562.3

ECOLI - YBJI SUPH YIDA YBHA COF YIGL MPGP
BACSU - YHAX YKRA YXEH YWPJ YWTE YITU YCSE NTDB
HALSA - PGP
SULSO - PGP1 PGP2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
248_G	257_D	4.120	1.00
17_D	251_N	3.454	1.00
212_V	226_A	3.121	1.00
249_S	252_R	2.908	1.00
223_L	229_S	2.890	1.00
22_N	253_E	2.733	1.00
4_K	209_E	2.729	1.00
25_R	253_E	2.575	1.00
200_Q	210_V	2.555	1.00
25_R	260_D	2.488	1.00
8_V	40_F	2.441	1.00
237_S	241_A	2.423	1.00
16_S	20_T	2.396	1.00
44_S	51_L	2.352	1.00
224_R	242_A	2.308	1.00
197_R	225_Q	2.224	1.00
207_D	225_Q	2.040	1.00
191_H	221_E	2.012	1.00
24_E	28_A	1.896	1.00
220_I	239_V	1.881	1.00
32_Q	35_A	1.866	1.00
80_F	198_Q	1.841	1.00
220_I	242_A	1.837	1.00
217_G	238_A	1.830	1.00
32_Q	260_D	1.816	1.00
3_I	211_V	1.786	1.00
237_S	240_V	1.783	1.00
217_G	236_G	1.777	1.00
229_S	244_K	1.774	1.00
248_G	252_R	1.774	1.00
231_A	243_A	1.763	1.00
30_Y	40_F	1.756	1.00
27_M	57_E	1.735	1.00
85_S	88_A	1.729	1.00
5_L	41_V	1.726	1.00
7_A	196_L	1.719	1.00
33_M	38_I	1.706	1.00
206_D	209_E	1.704	1.00
197_R	201_K	1.689	1.00
74_S	77_K	1.658	1.00
198_Q	202_L	1.637	1.00
32_Q	36_Q	1.624	1.00
198_Q	201_K	1.600	1.00
230_F	258_V	1.583	1.00
228_F	244_K	1.580	1.00
228_F	245_Y	1.577	1.00
239_V	242_A	1.564	1.00
245_Y	262_V	1.559	1.00
194_N	197_R	1.537	1.00
193_A	225_Q	1.531	1.00
196_L	222_M	1.520	1.00
10_M	15_L	1.517	1.00
82_G	198_Q	1.513	1.00
22_N	26_F	1.508	1.00
3_I	38_I	1.500	1.00
8_V	213_F	1.478	1.00
39_R	203_W	1.476	1.00
97_L	115_L	1.463	1.00
138_N	141_N	1.454	1.00
91_T	172_I	1.449	1.00
245_Y	258_V	1.440	1.00
28_A	32_Q	1.439	1.00
96_L	151_L	1.436	1.00
212_V	222_M	1.431	1.00
25_R	257_D	1.421	1.00
213_F	255_V	1.418	1.00
26_F	253_E	1.392	1.00
208_S	227_G	1.382	1.00
162_Q	166_H	1.375	1.00
27_M	31_Q	1.372	1.00
3_I	228_F	1.338	1.00
231_A	235_A	1.337	1.00
3_I	209_E	1.334	1.00
7_A	43_A	1.301	1.00
233_E	249_S	1.291	1.00
34_K	61_E	1.286	1.00
81_N	145_I	1.281	1.00
223_L	239_V	1.277	1.00
88_A	91_T	1.275	1.00
213_F	258_V	1.274	1.00
29_Q	256_L	1.273	1.00
207_D	210_V	1.247	1.00
200_Q	207_D	1.245	1.00
88_A	172_I	1.240	1.00
86_K	90_A	1.239	1.00
174_V	221_E	1.220	1.00
238_A	241_A	1.214	1.00
220_I	224_R	1.212	1.00
245_Y	261_K	1.210	1.00
82_G	187_I	1.207	1.00
78_D	81_N	1.204	1.00
157_L	160_Q	1.186	1.00
29_Q	260_D	1.185	1.00
16_S	251_N	1.182	1.00
240_V	246_R	1.180	1.00
258_V	262_V	1.179	1.00
71_W	78_D	1.178	1.00
6_I	33_M	1.177	1.00
255_V	259_I	1.172	1.00
88_A	173_M	1.169	1.00
31_Q	35_A	1.167	1.00
25_R	29_Q	1.166	1.00
63_A	203_W	1.160	1.00
17_D	250_N	1.153	1.00
211_V	262_V	1.149	1.00
6_I	259_I	1.148	1.00
22_N	25_R	1.141	1.00
210_V	226_A	1.136	1.00
41_V	199_L	1.130	1.00
41_V	63_A	1.129	1.00
174_V	189_G	1.120	1.00
5_L	205_I	1.118	1.00
120_D	124_T	1.116	1.00
120_D	123_K	1.115	1.00
5_L	200_Q	1.114	1.00
159_P	163_K	1.111	1.00
159_P	177_H	1.107	1.00
212_V	223_L	1.107	1.00
247_A	258_V	1.106	1.00
247_A	254_G	1.102	1.00
148_K	184_D	1.099	1.00
65_V	195_G	1.089	1.00
234_N	250_N	1.088	1.00
72_V	198_Q	1.085	1.00
176_V	186_I	1.078	1.00
6_I	38_I	1.076	1.00
7_A	210_V	1.075	1.00
226_A	229_S	1.061	1.00
81_N	147_F	1.054	1.00
207_D	227_G	1.049	1.00
232_M	254_G	1.049	1.00
10_M	54_F	1.038	1.00
34_K	62_I	1.037	1.00
230_F	247_A	1.032	1.00
236_G	239_V	1.030	1.00
94_E	98_T	1.026	1.00
187_I	190_V	1.024	1.00
153_L	157_L	1.017	1.00
24_E	27_M	1.014	1.00
5_L	210_V	1.007	1.00
31_Q	34_K	1.006	1.00
14_F	26_F	1.005	1.00
257_D	261_K	1.005	1.00
256_L	260_D	1.001	1.00
191_H	194_N	0.996	1.00
211_V	230_F	0.987	1.00
200_Q	225_Q	0.983	1.00
14_F	30_Y	0.983	1.00
235_A	240_V	0.976	1.00
172_I	188_P	0.975	1.00
72_V	80_F	0.973	1.00
230_F	245_Y	0.969	1.00
258_V	261_K	0.966	1.00
216_G	236_G	0.964	1.00
95_H	98_T	0.964	1.00
193_A	221_E	0.960	1.00
211_V	228_F	0.959	1.00
31_Q	59_A	0.955	1.00
196_L	226_A	0.954	1.00
82_G	189_G	0.953	1.00
248_G	254_G	0.952	1.00
199_L	203_W	0.944	1.00
90_A	94_E	0.944	1.00
211_V	258_V	0.942	1.00
233_E	240_V	0.939	1.00
70_G	190_V	0.938	1.00
83_E	145_I	0.931	1.00
48_Y	66_A	0.929	1.00
231_A	239_V	0.911	1.00
163_K	166_H	0.908	1.00
28_A	31_Q	0.908	1.00
197_R	207_D	0.907	1.00
160_Q	163_K	0.906	1.00
200_Q	205_I	0.905	1.00
8_V	255_V	0.905	1.00
73_V	78_D	0.901	1.00
33_M	40_F	0.901	1.00
200_Q	227_G	0.899	1.00
72_V	195_G	0.898	1.00
232_M	247_A	0.895	1.00
217_G	220_I	0.893	1.00
7_A	41_V	0.893	1.00
100_P	164_A	0.887	1.00
79_V	202_L	0.887	1.00
233_E	248_G	0.884	1.00
160_Q	164_A	0.883	1.00
257_D	260_D	0.880	1.00
81_N	109_K	0.876	1.00
66_A	71_W	0.871	1.00
186_I	191_H	0.864	1.00
26_F	256_L	0.859	1.00
210_V	227_G	0.853	1.00
52_I	76_G	0.851	1.00
233_E	252_R	0.843	1.00
95_H	100_P	0.839	1.00
44_S	66_A	0.837	1.00
65_V	199_L	0.832	1.00
153_L	158_I	0.832	1.00
52_I	56_P	0.829	1.00
16_S	22_N	0.828	1.00
73_V	76_G	0.828	1.00
63_A	74_S	0.827	1.00
238_A	242_A	0.821	1.00
84_L	187_I	0.819	1.00
91_T	94_E	0.819	1.00
210_V	225_Q	0.812	1.00
43_A	65_V	0.810	1.00
87_D	91_T	0.804	1.00
63_A	199_L	0.801	1.00
212_V	229_S	0.797	1.00
6_I	211_V	0.796	1.00
227_G	244_K	0.796	1.00
94_E	140_D	0.795	1.00
18_Q	251_N	0.791	1.00
39_R	63_A	0.790	1.00
223_L	242_A	0.789	1.00
175_S	185_L	0.788	1.00
38_I	211_V	0.787	1.00
171_D	188_P	0.783	1.00
48_Y	73_V	0.776	1.00
29_Q	32_Q	0.775	1.00
25_R	256_L	0.769	1.00
66_A	73_V	0.768	1.00
83_E	147_F	0.766	1.00
33_M	259_I	0.766	1.00
8_V	14_F	0.763	1.00
93_V	97_L	0.761	1.00
26_F	29_Q	0.759	1.00
162_Q	177_H	0.758	1.00
174_V	191_H	0.756	1.00
98_T	164_A	0.751	1.00
10_M	42_V	0.743	1.00
95_H	169_I	0.743	1.00
248_G	261_K	0.743	1.00
47_Q	67_E	0.742	1.00
232_M	235_A	0.741	1.00
100_P	160_Q	0.730	1.00
86_K	145_I	0.728	1.00
159_P	162_Q	0.728	1.00
77_K	202_L	0.727	1.00
111_S	134_E	0.726	1.00
123_K	127_E	0.723	1.00
51_L	64_F	0.721	1.00
235_A	239_V	0.718	1.00
223_L	243_A	0.711	1.00
91_T	95_H	0.709	1.00
95_H	164_A	0.708	1.00
190_V	194_N	0.706	1.00
196_L	212_V	0.701	1.00
137_D	141_N	0.701	1.00
194_N	198_Q	0.701	1.00
51_L	66_A	0.696	1.00
42_V	51_L	0.692	1.00
68_N	184_D	0.689	1.00
209_E	227_G	0.688	1.00
122_M	125_V	0.687	1.00
14_F	21_Y	0.684	1.00
126_A	133_L	0.683	1.00
215_D	235_A	0.682	1.00
16_S	250_N	0.679	1.00
137_D	140_D	0.676	1.00
71_W	147_F	0.676	1.00
10_M	51_L	0.675	1.00
48_Y	52_I	0.672	1.00
12_G	232_M	0.670	1.00
60_N	63_A	0.667	1.00
108_G	146_F	0.667	1.00
215_D	232_M	0.666	1.00
97_L	104_I	0.663	1.00
14_F	250_N	0.662	1.00
43_A	222_M	0.661	1.00
245_Y	248_G	0.661	1.00
150_G	184_D	0.660	1.00
245_Y	257_D	0.659	1.00
164_A	167_E	0.658	1.00
197_R	200_Q	0.655	1.00
91_T	169_I	0.654	1.00
118_Y	122_M	0.648	1.00
229_S	243_A	0.643	1.00
229_S	239_V	0.641	1.00
70_G	187_I	0.640	1.00
89_F	146_F	0.639	1.00
213_F	230_F	0.636	1.00
174_V	186_I	0.634	1.00
213_F	247_A	0.630	1.00
221_E	224_R	0.628	1.00
87_D	90_A	0.627	1.00
78_D	109_K	0.626	1.00
14_F	42_V	0.626	1.00
174_V	188_P	0.625	1.00
109_K	145_I	0.623	1.00
118_Y	123_K	0.621	1.00
234_N	240_V	0.621	1.00
253_E	256_L	0.621	1.00
25_R	28_A	0.617	1.00
108_G	144_D	0.617	1.00
127_E	130_Y	0.608	1.00
42_V	55_F	0.608	1.00
10_M	14_F	0.608	1.00
163_K	167_E	0.607	1.00
5_L	199_L	0.606	1.00
148_K	178_T	0.602	1.00
38_I	209_E	0.602	1.00
136_V	139_F	0.598	1.00
55_F	64_F	0.598	1.00
228_F	258_V	0.595	1.00
71_W	109_K	0.594	1.00
29_Q	33_M	0.590	1.00
247_A	257_D	0.590	1.00
256_L	259_I	0.588	1.00
220_I	223_L	0.585	1.00
53_S	56_P	0.583	1.00
93_V	106_A	0.583	1.00
6_I	213_F	0.581	1.00
90_A	140_D	0.581	1.00
231_A	242_A	0.580	1.00
193_A	197_R	0.579	1.00
106_A	146_F	0.577	1.00
105_I	150_G	0.574	0.99
72_V	202_L	0.572	0.99
189_G	194_N	0.570	0.99
239_V	243_A	0.569	0.99
153_L	161_V	0.567	0.99
67_E	70_G	0.567	0.99
67_E	147_F	0.566	0.99
156_E	160_Q	0.565	0.99
33_M	256_L	0.562	0.99
89_F	93_V	0.561	0.99
217_G	239_V	0.560	0.99
43_A	68_N	0.559	0.99
158_I	183_I	0.556	0.99
175_S	183_I	0.556	0.99
8_V	33_M	0.554	0.99
86_K	143_E	0.554	0.99
236_G	240_V	0.554	0.99
15_L	250_N	0.553	0.99
165_L	175_S	0.552	0.99
74_S	79_V	0.552	0.99
205_I	210_V	0.552	0.99
232_M	250_N	0.550	0.99
248_G	258_V	0.550	0.99
74_S	202_L	0.549	0.99
213_F	259_I	0.547	0.99
28_A	260_D	0.547	0.99
109_K	144_D	0.546	0.99
234_N	249_S	0.545	0.99
101_E	157_L	0.545	0.99
72_V	199_L	0.541	0.99
39_R	62_I	0.540	0.99
21_Y	27_M	0.533	0.99
253_E	257_D	0.533	0.99
22_N	256_L	0.532	0.99
4_K	38_I	0.531	0.99
119_D	122_M	0.531	0.99
26_F	30_Y	0.530	0.99
53_S	57_E	0.527	0.99
39_R	205_I	0.524	0.99
51_L	54_F	0.521	0.99
230_F	244_K	0.517	0.99
47_Q	50_Q	0.515	0.99
94_E	97_L	0.514	0.99
154_S	157_L	0.514	0.99
127_E	131_H	0.514	0.99
166_H	175_S	0.514	0.99
30_Y	259_I	0.512	0.99
196_L	200_Q	0.509	0.99
5_L	39_R	0.509	0.99
158_I	177_H	0.509	0.99
126_A	132_R	0.508	0.99
126_A	130_Y	0.508	0.99
34_K	59_A	0.507	0.99
179_G	216_G	0.507	0.99
42_V	58_I	0.507	0.99
67_E	182_S	0.506	0.99
151_L	161_V	0.505	0.99
95_H	165_L	0.504	0.99
14_F	255_V	0.504	0.99
7_A	200_Q	0.504	0.99
108_G	111_S	0.504	0.99
199_L	202_L	0.502	0.99
104_I	149_F	0.501	0.99
205_I	227_G	0.501	0.99
152_N	182_S	0.500	0.99
34_K	40_F	0.500	0.99

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3pgvA	3	0.9446	100	0.218	Contact Map
3l7yA	1	0.9668	100	0.219	Contact Map
1rlmA	1	0.9926	100	0.23	Contact Map
1nrwA	1	0.9483	100	0.232	Contact Map
2b30A	2	0.9631	100	0.238	Contact Map
3daoA	1	0.9631	100	0.238	Contact Map
1rkqA	1	0.9705	100	0.246	Contact Map
4qjbA	1	0.9668	100	0.248	Contact Map
1nf2A	4	0.9705	100	0.251	Contact Map
2pq0A	1	0.9446	100	0.261	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0096 seconds.