GREMLIN Database
YBJG - Putative undecaprenyl-diphosphatase YbjG
UniProt: P75806 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13676
Length: 198 (166)
Sequences: 7237 (5577)
Seq/√Len: 432.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
136_A154_L3.6851.00
114_L161_C3.5141.00
79_P99_D3.3401.00
71_S107_T2.9081.00
101_F152_G2.7601.00
80_H148_L2.6421.00
6_N80_H2.5881.00
118_C165_Q2.4761.00
67_S111_T2.4511.00
66_V160_G2.3521.00
74_M78_F2.3461.00
110_F132_A2.3271.00
67_S107_T2.2671.00
24_I141_Y2.2481.00
106_G136_A2.2251.00
110_F154_L2.0471.00
31_A138_S2.0471.00
10_F147_P1.9851.00
153_G157_G1.9801.00
106_G110_F1.9671.00
10_F140_V1.9131.00
27_A137_W1.9111.00
114_L158_M1.9101.00
110_F136_A1.8911.00
7_L11_S1.8261.00
32_K35_I1.7951.00
162_L166_I1.7851.00
113_A132_A1.7231.00
136_A150_M1.6941.00
109_I135_I1.6811.00
117_L125_G1.6531.00
157_G161_C1.6041.00
33_D131_L1.5681.00
12_L16_T1.5601.00
140_V150_M1.5021.00
106_G154_L1.5021.00
63_A111_T1.4941.00
30_I135_I1.4921.00
14_N17_P1.4781.00
30_I134_V1.4671.00
106_G153_G1.4151.00
25_S28_I1.3791.00
159_I162_L1.2861.00
37_V40_L1.2781.00
6_N148_L1.2701.00
102_P156_A1.2581.00
50_L53_Q1.2301.00
68_L72_W1.2281.00
45_L49_G1.2231.00
125_G128_L1.2101.00
107_T156_A1.1971.00
158_M162_L1.1951.00
126_S130_V1.1901.00
27_A138_S1.1891.00
113_A128_L1.1881.00
78_F101_F1.1861.00
75_G104_D1.1791.00
80_H146_W1.1721.00
74_M102_P1.1651.00
38_V41_L1.1631.00
160_G164_A1.1511.00
53_Q56_L1.1511.00
117_L128_L1.1491.00
73_T77_L1.1461.00
10_F14_N1.1441.00
140_V147_P1.1151.00
113_A131_L1.1141.00
71_S104_D1.1001.00
72_W76_H1.0951.00
23_M27_A1.0751.00
18_D21_P1.0591.00
37_V41_L1.0551.00
106_G150_M1.0461.00
8_S12_L1.0411.00
44_V48_W1.0381.00
100_S146_W1.0351.00
132_A154_L1.0271.00
114_L157_G1.0271.00
63_A67_S1.0171.00
59_K164_A1.0101.00
102_P152_G0.9881.00
121_R125_G0.9641.00
45_L48_W0.9611.00
96_A144_V0.9521.00
129_M132_A0.9511.00
12_L15_A0.9491.00
110_F129_M0.9461.00
156_A160_G0.9421.00
46_W50_L0.9321.00
51_T54_R0.9311.00
22_W26_L0.9271.00
25_S29_F0.9211.00
59_K115_A0.9181.00
9_L12_L0.9081.00
31_A142_L0.9061.00
117_L129_M0.9041.00
84_F96_A0.9041.00
27_A31_A0.8921.00
71_S156_A0.8921.00
60_I115_A0.8891.00
26_L134_V0.8801.00
27_A141_Y0.8731.00
109_I132_A0.8701.00
31_A35_I0.8681.00
131_L135_I0.8591.00
165_Q169_Q0.8581.00
115_A119_W0.8571.00
69_F73_T0.8531.00
154_L158_M0.8491.00
29_F32_K0.8421.00
18_D22_W0.8391.00
110_F161_C0.8341.00
51_T55_Q0.8291.00
115_A161_C0.8281.00
81_D86_E0.8241.00
147_P151_L0.8211.00
113_A117_L0.8181.00
138_S142_L0.8161.00
66_V164_A0.8101.00
74_M156_A0.8091.00
62_I65_A0.8071.00
40_L47_L0.8071.00
110_F133_V0.8041.00
36_T40_L0.8001.00
76_H99_D0.7971.00
28_I32_K0.7951.00
8_S11_S0.7941.00
75_G82_R0.7921.00
118_C161_C0.7911.00
60_I64_L0.7801.00
124_S128_L0.7771.00
52_A55_Q0.7731.00
77_L81_D0.7691.00
34_L135_I0.7681.00
55_Q59_K0.7671.00
114_L129_M0.7581.00
120_H124_S0.7561.00
59_K119_W0.7551.00
24_I28_I0.7531.00
70_V73_T0.7431.00
7_L86_E0.7421.00
100_S149_D0.7421.00
107_T160_G0.7391.00
61_A65_A0.7381.00
81_D85_V0.7371.00
114_L118_C0.7331.00
9_L147_P0.7331.00
35_I104_D0.7281.00
64_L68_L0.7261.00
5_L8_S0.7251.00
63_A66_V0.7231.00
63_A115_A0.7221.00
80_H100_S0.7181.00
23_M141_Y0.7141.00
64_L108_V0.7131.00
137_W141_Y0.7101.00
116_F128_L0.7101.00
38_V42_A0.7081.00
24_I27_A0.7051.00
70_V156_A0.7041.00
84_F146_W0.7041.00
56_L59_K0.7031.00
26_L29_F0.6941.00
59_K118_C0.6921.00
63_A164_A0.6911.00
13_I16_T0.6891.00
107_T153_G0.6881.00
143_G147_P0.6851.00
41_L44_V0.6851.00
59_K63_A0.6821.00
118_C162_L0.6811.00
109_I131_L0.6801.00
144_V147_P0.6781.00
13_I140_V0.6741.00
155_L158_M0.6711.00
164_A168_W0.6701.00
105_H145_H0.6701.00
92_F95_H0.6671.00
70_V160_G0.6631.00
109_I113_A0.6611.00
87_N95_H0.6550.99
39_P42_A0.6520.99
106_G109_I0.6500.99
18_D24_I0.6490.99
110_F158_M0.6490.99
115_A118_C0.6430.99
64_L112_F0.6380.99
31_A135_I0.6370.99
39_P112_F0.6370.99
93_L144_V0.6330.99
31_A144_V0.6330.99
107_T111_T0.6320.99
123_W127_L0.6290.99
31_A34_L0.6250.99
36_T108_V0.6220.99
56_L60_I0.6210.99
39_P46_W0.6190.99
16_T21_P0.6170.99
11_S15_A0.6140.99
104_D108_V0.6110.99
26_L30_I0.6090.99
135_I138_S0.6090.99
37_V48_W0.6080.99
133_V154_L0.6080.99
27_A30_I0.6070.99
67_S108_V0.6060.99
127_L130_V0.6040.99
17_P24_I0.6020.99
101_F149_D0.6010.99
10_F148_L0.5960.99
111_T115_A0.5950.99
6_N10_F0.5940.99
84_F95_H0.5910.99
151_L154_L0.5900.99
40_L44_V0.5890.99
22_W25_S0.5820.99
18_D23_M0.5810.99
155_L159_I0.5760.99
14_N24_I0.5730.99
16_T137_W0.5700.99
9_L13_I0.5680.99
164_A167_I0.5670.99
49_G52_A0.5670.99
10_F142_L0.5640.98
136_A140_V0.5630.98
63_A161_C0.5560.98
84_F144_V0.5540.98
31_A139_R0.5490.98
68_L71_S0.5460.98
37_V43_V0.5450.98
43_V47_L0.5420.98
54_R58_I0.5410.98
30_I138_S0.5380.98
5_L9_L0.5330.98
152_G155_L0.5330.98
64_L67_S0.5320.98
13_I17_P0.5310.98
104_D109_I0.5280.98
169_Q172_G0.5270.98
33_D36_T0.5250.98
111_T161_C0.5240.98
21_P25_S0.5240.98
14_N146_W0.5190.97
41_L45_L0.5180.97
14_N143_G0.5180.97
85_V146_W0.5130.97
58_I62_I0.5070.97
120_H128_L0.5060.97
10_F13_I0.5000.97
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4px7A 1 0.9697 100 0.362 Contact Map
1d2tA 5 0.9242 99.9 0.448 Contact Map
4citA 1 0.8889 99.9 0.458 Contact Map
2ipbA 2 0.9343 99.9 0.484 Contact Map
1qi9A 2 0.9596 99.9 0.491 Contact Map
1up8A 9 0.9394 99.9 0.506 Contact Map
3w36A 2 0.8586 99.9 0.511 Contact Map
3bb0A 1 0.9192 99.8 0.559 Contact Map
2kluA 1 0.2424 26.5 0.931 Contact Map
4mndA 2 0.6616 24.8 0.931 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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