YBHI - ECOLI - GREMLIN Contacts

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YBHI - Inner membrane protein YbhI

UniProt:	P75763	Sequences: MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13665
Length:	477 (408)
Sequences:	9079 (6158)
Seq/√Len:	304.9

ECOLI - YBHI TTDT CITT YFBS ARSB YFJV YBIR
BACSU - YFLS YWRK YDFA
HALSA - Q9HMC9
SULSO - Q980X8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
77_K	80_A	4.785	1.00
123_T	126_G	4.468	1.00
347_E	351_E	4.188	1.00
105_T	316_D	4.089	1.00
80_A	342_K	3.244	1.00
281_A	302_V	3.036	1.00
272_K	276_G	3.026	1.00
195_F	205_L	2.958	1.00
115_L	119_K	2.812	1.00
94_F	327_L	2.750	1.00
135_D	153_V	2.733	1.00
443_K	447_L	2.695	1.00
441_D	444_S	2.681	1.00
260_G	263_E	2.660	1.00
217_S	220_G	2.628	1.00
180_M	434_I	2.623	1.00
363_G	366_A	2.619	1.00
313_T	316_D	2.569	1.00
115_L	118_G	2.541	1.00
42_A	60_A	2.512	1.00
102_A	306_M	2.454	1.00
36_F	345_F	2.454	1.00
315_E	320_N	2.431	1.00
33_W	37_G	2.409	1.00
444_S	447_L	2.321	1.00
98_T	303_M	2.304	1.00
275_L	279_V	2.290	1.00
223_L	227_L	2.221	1.00
136_L	229_G	2.211	1.00
125_L	241_Y	2.180	1.00
44_V	48_I	2.087	1.00
181_M	185_M	2.072	1.00
348_W	352_V	2.052	1.00
280_L	284_G	2.012	1.00
157_I	183_I	2.011	1.00
269_I	273_M	2.003	1.00
277_V	302_V	1.992	1.00
111_R	115_L	1.981	1.00
267_M	271_E	1.967	1.00
95_S	303_M	1.961	1.00
222_A	226_G	1.952	1.00
131_T	157_I	1.932	1.00
376_I	453_T	1.913	1.00
38_I	63_A	1.897	1.00
261_L	265_G	1.878	1.00
287_F	291_L	1.877	1.00
375_I	391_M	1.852	1.00
189_T	232_M	1.828	1.00
41_A	45_G	1.818	1.00
338_S	342_K	1.815	1.00
283_L	287_F	1.812	1.00
412_A	464_G	1.811	1.00
462_T	466_W	1.803	1.00
238_L	242_T	1.774	1.00
219_G	223_L	1.770	1.00
193_M	229_G	1.770	1.00
137_V	141_A	1.756	1.00
61_V	82_L	1.754	1.00
232_M	456_T	1.746	1.00
242_T	245_P	1.727	1.00
369_V	461_I	1.710	1.00
95_S	299_A	1.707	1.00
454_I	458_L	1.706	1.00
373_L	457_F	1.694	1.00
267_M	270_R	1.690	1.00
362_H	366_A	1.671	1.00
102_A	274_L	1.661	1.00
220_G	407_M	1.656	1.00
99_L	281_A	1.654	1.00
111_R	271_E	1.635	1.00
268_K	271_E	1.629	1.00
272_K	275_L	1.617	1.00
45_G	48_I	1.611	1.00
38_I	60_A	1.601	1.00
196_T	218_W	1.597	1.00
135_D	187_T	1.593	1.00
265_G	271_E	1.585	1.00
45_G	56_V	1.584	1.00
365_V	465_V	1.583	1.00
277_V	305_T	1.568	1.00
220_G	223_L	1.562	1.00
372_F	416_S	1.554	1.00
273_M	276_G	1.548	1.00
139_A	190_T	1.534	1.00
38_I	64_S	1.529	1.00
38_I	67_V	1.529	1.00
276_G	280_L	1.528	1.00
94_F	98_T	1.517	1.00
230_I	234_L	1.514	1.00
62_A	304_A	1.511	1.00
277_V	281_A	1.510	1.00
425_H	435_F	1.498	1.00
64_S	339_L	1.483	1.00
90_T	327_L	1.475	1.00
377_V	381_F	1.470	1.00
32_A	345_F	1.466	1.00
186_V	190_T	1.456	1.00
85_Y	331_G	1.454	1.00
120_I	130_V	1.450	1.00
352_V	355_N	1.446	1.00
279_V	283_L	1.443	1.00
277_V	306_M	1.441	1.00
51_F	55_V	1.440	1.00
132_V	186_V	1.440	1.00
270_R	273_M	1.431	1.00
263_E	267_M	1.408	1.00
34_V	75_A	1.398	1.00
51_F	56_V	1.395	1.00
287_F	290_S	1.391	1.00
380_F	453_T	1.387	1.00
101_A	104_V	1.384	1.00
460_H	464_G	1.376	1.00
446_W	450_A	1.375	1.00
129_Y	237_P	1.369	1.00
34_V	67_V	1.368	1.00
388_I	417_N	1.364	1.00
104_V	321_K	1.359	1.00
35_L	339_L	1.354	1.00
193_M	226_G	1.353	1.00
122_N	126_G	1.352	1.00
67_V	75_A	1.349	1.00
235_V	455_L	1.343	1.00
423_V	453_T	1.343	1.00
54_P	325_N	1.328	1.00
259_A	263_E	1.326	1.00
259_A	262_A	1.322	1.00
184_Y	434_I	1.321	1.00
121_G	126_G	1.303	1.00
255_T	259_A	1.297	1.00
340_L	346_F	1.293	1.00
274_L	278_F	1.283	1.00
52_P	56_V	1.282	1.00
239_V	242_T	1.279	1.00
340_L	345_F	1.270	1.00
238_L	241_Y	1.266	1.00
450_A	454_I	1.266	1.00
262_A	265_G	1.263	1.00
463_L	467_W	1.263	1.00
101_A	322_G	1.260	1.00
32_A	348_W	1.256	1.00
379_Y	384_G	1.247	1.00
341_S	347_E	1.236	1.00
132_V	182_S	1.225	1.00
190_T	233_L	1.223	1.00
39_Y	42_A	1.204	1.00
37_G	41_A	1.204	1.00
254_K	258_K	1.203	1.00
261_L	267_M	1.201	1.00
227_L	463_L	1.199	1.00
268_K	272_K	1.199	1.00
277_V	285_W	1.198	1.00
261_L	264_L	1.195	1.00
278_F	285_W	1.194	1.00
124_T	178_Y	1.193	1.00
61_V	332_G	1.187	1.00
36_F	40_L	1.182	1.00
274_L	277_V	1.178	1.00
280_L	305_T	1.176	1.00
63_A	67_V	1.174	1.00
190_T	197_A	1.172	1.00
180_M	440_N	1.172	1.00
42_A	56_V	1.171	1.00
244_Y	448_V	1.169	1.00
154_L	433_V	1.168	1.00
273_M	277_V	1.167	1.00
80_A	83_S	1.166	1.00
65_M	81_V	1.161	1.00
412_A	416_S	1.157	1.00
41_A	63_A	1.155	1.00
35_L	64_S	1.155	1.00
145_N	191_S	1.144	1.00
228_P	459_V	1.144	1.00
351_E	355_N	1.138	1.00
395_F	413_L	1.134	1.00
67_V	74_G	1.132	1.00
263_E	266_P	1.130	1.00
131_T	160_V	1.117	1.00
273_M	309_L	1.104	1.00
40_L	44_V	1.100	1.00
443_K	446_W	1.097	1.00
132_V	236_T	1.096	1.00
144_S	147_A	1.090	1.00
457_F	461_I	1.084	1.00
136_L	233_L	1.084	1.00
191_S	198_M	1.074	1.00
208_I	410_A	1.071	1.00
88_G	296_S	1.065	1.00
38_I	42_A	1.063	1.00
373_L	377_V	1.061	1.00
462_T	465_V	1.059	1.00
161_A	179_L	1.052	1.00
404_A	409_T	1.051	1.00
378_R	387_Y	1.048	1.00
235_V	459_V	1.044	1.00
266_P	269_I	1.038	1.00
436_G	439_Y	1.035	1.00
273_M	285_W	1.032	1.00
330_Y	385_S	1.031	1.00
392_L	410_A	1.028	1.00
83_S	338_S	1.023	1.00
265_G	269_I	1.022	1.00
257_A	261_L	1.019	1.00
338_S	341_S	1.016	1.00
118_G	258_K	1.012	1.00
58_L	328_I	1.005	1.00
231_I	459_V	0.998	1.00
274_L	285_W	0.992	1.00
226_G	230_I	0.991	1.00
88_G	294_D	0.987	1.00
372_F	412_A	0.987	1.00
84_G	335_G	0.982	1.00
149_A	187_T	0.978	1.00
350_A	354_K	0.976	1.00
39_Y	340_L	0.976	1.00
200_G	418_S	0.974	1.00
101_A	321_K	0.972	1.00
384_G	427_G	0.968	1.00
274_L	281_A	0.966	1.00
93_V	385_S	0.964	1.00
380_F	420_G	0.953	1.00
273_M	311_I	0.952	1.00
155_P	159_S	0.949	1.00
425_H	432_P	0.949	1.00
191_S	194_F	0.948	1.00
110_K	114_Y	0.944	1.00
255_T	258_K	0.944	1.00
77_K	81_V	0.943	1.00
132_V	233_L	0.942	1.00
423_V	446_W	0.939	1.00
393_P	396_A	0.938	1.00
276_G	279_V	0.923	1.00
348_W	351_E	0.922	1.00
373_L	461_I	0.922	1.00
239_V	455_L	0.922	1.00
384_G	420_G	0.918	1.00
42_A	336_L	0.914	1.00
146_T	198_M	0.911	1.00
458_L	462_T	0.908	1.00
195_F	222_A	0.907	1.00
269_I	272_K	0.906	1.00
95_S	300_I	0.904	1.00
184_Y	431_G	0.904	1.00
383_S	386_A	0.903	1.00
264_L	267_M	0.902	1.00
200_G	385_S	0.901	1.00
151_G	433_V	0.899	1.00
396_A	400_N	0.898	1.00
189_T	236_T	0.898	1.00
181_M	448_V	0.892	1.00
396_A	399_A	0.892	1.00
351_E	354_K	0.884	1.00
424_T	427_G	0.883	1.00
81_V	335_G	0.883	1.00
277_V	284_G	0.882	1.00
400_N	406_L	0.879	1.00
239_V	243_M	0.877	1.00
415_F	460_H	0.874	1.00
61_V	335_G	0.873	1.00
148_R	187_T	0.873	1.00
140_P	193_M	0.870	1.00
134_L	153_V	0.870	1.00
103_F	108_L	0.869	1.00
285_W	299_A	0.868	1.00
111_R	114_Y	0.867	1.00
385_S	429_A	0.867	1.00
376_I	457_F	0.861	1.00
284_G	301_V	0.859	1.00
194_F	197_A	0.853	1.00
200_G	428_G	0.853	1.00
282_L	285_W	0.853	1.00
45_G	59_I	0.852	1.00
35_L	75_A	0.851	1.00
375_I	413_L	0.846	1.00
192_Y	229_G	0.846	1.00
284_G	298_V	0.843	1.00
198_M	201_N	0.842	1.00
294_D	297_T	0.841	1.00
144_S	385_S	0.836	1.00
57_L	332_G	0.835	1.00
451_V	454_I	0.834	1.00
75_A	339_L	0.834	1.00
146_T	191_S	0.833	1.00
42_A	46_L	0.832	1.00
203_L	392_L	0.832	1.00
310_G	313_T	0.831	1.00
204_A	414_L	0.830	1.00
453_T	456_T	0.830	1.00
117_I	160_V	0.829	1.00
166_S	179_L	0.828	1.00
57_L	61_V	0.828	1.00
380_F	423_V	0.827	1.00
281_A	284_G	0.826	1.00
111_R	265_G	0.825	1.00
260_G	264_L	0.822	1.00
380_F	427_G	0.821	1.00
385_S	428_G	0.819	1.00
449_G	452_L	0.815	1.00
273_M	281_A	0.814	1.00
44_V	50_P	0.814	1.00
423_V	450_A	0.810	1.00
99_L	306_M	0.809	1.00
371_I	413_L	0.808	1.00
133_F	137_V	0.807	1.00
77_K	342_K	0.805	1.00
138_L	148_R	0.805	1.00
199_A	385_S	0.805	1.00
47_V	50_P	0.803	1.00
275_L	283_L	0.796	1.00
279_V	282_L	0.796	1.00
190_T	194_F	0.795	1.00
76_F	335_G	0.791	1.00
128_G	179_L	0.788	1.00
180_M	183_I	0.786	0.99
200_G	388_I	0.786	0.99
203_L	385_S	0.785	0.99
397_M	400_N	0.783	0.99
74_G	77_K	0.783	0.99
334_I	389_V	0.783	0.99
242_T	246_P	0.781	0.99
207_M	392_L	0.780	0.99
203_L	389_V	0.780	0.99
323_G	326_T	0.775	0.99
383_S	420_G	0.775	0.99
125_L	237_P	0.774	0.99
374_S	378_R	0.772	0.99
221_W	411_L	0.772	0.99
368_F	412_A	0.771	0.99
277_V	282_L	0.771	0.99
444_S	448_V	0.768	0.99
95_S	296_S	0.766	0.99
184_Y	430_A	0.765	0.99
87_S	206_K	0.760	0.99
37_G	40_L	0.760	0.99
392_L	396_A	0.759	0.99
271_E	278_F	0.759	0.99
281_A	285_W	0.759	0.99
204_A	388_I	0.757	0.99
90_T	331_G	0.757	0.99
159_S	163_A	0.756	0.99
313_T	317_V	0.753	0.99
154_L	180_M	0.753	0.99
385_S	388_I	0.752	0.99
35_L	343_V	0.752	0.99
379_Y	420_G	0.752	0.99
363_G	370_I	0.751	0.99
195_F	202_I	0.748	0.99
157_I	179_L	0.748	0.99
379_Y	427_G	0.746	0.99
59_I	304_A	0.744	0.99
45_G	50_P	0.744	0.99
266_P	270_R	0.743	0.99
193_M	197_A	0.742	0.99
39_Y	336_L	0.742	0.99
364_N	368_F	0.739	0.99
201_N	221_W	0.739	0.99
110_K	260_G	0.737	0.99
222_A	227_L	0.736	0.99
375_I	417_N	0.734	0.99
46_L	57_L	0.734	0.99
234_L	238_L	0.732	0.99
299_A	302_V	0.732	0.99
369_V	373_L	0.731	0.99
377_V	453_T	0.728	0.99
260_G	267_M	0.728	0.99
375_I	416_S	0.726	0.99
139_A	145_N	0.723	0.99
193_M	222_A	0.722	0.99
54_P	61_V	0.722	0.99
53_E	57_L	0.720	0.99
59_I	62_A	0.718	0.99
146_T	383_S	0.718	0.99
256_I	259_A	0.717	0.99
91_W	331_G	0.717	0.99
76_F	80_A	0.715	0.99
198_M	418_S	0.714	0.99
240_I	244_Y	0.711	0.99
257_A	260_G	0.711	0.99
226_G	229_G	0.711	0.99
192_Y	419_Y	0.706	0.99
221_W	414_L	0.705	0.99
137_V	140_P	0.704	0.99
326_T	385_S	0.704	0.99
218_W	222_A	0.703	0.99
52_P	55_V	0.702	0.99
228_P	232_M	0.700	0.99
184_Y	188_K	0.700	0.99
232_M	419_Y	0.699	0.99
236_T	452_L	0.697	0.99
145_N	197_A	0.697	0.99
260_G	265_G	0.696	0.99
90_T	330_Y	0.695	0.99
411_L	415_F	0.694	0.99
58_L	332_G	0.690	0.99
59_I	63_A	0.689	0.99
264_L	271_E	0.689	0.99
303_M	307_L	0.687	0.99
260_G	266_P	0.686	0.99
293_V	298_V	0.686	0.99
204_A	392_L	0.685	0.99
89_T	93_V	0.685	0.99
129_Y	133_F	0.685	0.99
188_K	422_M	0.684	0.99
263_E	269_I	0.684	0.99
372_F	457_F	0.684	0.99
233_L	237_P	0.683	0.99
396_A	410_A	0.683	0.99
200_G	330_Y	0.683	0.99
288_S	291_L	0.678	0.99
273_M	287_F	0.677	0.99
227_L	230_I	0.674	0.98
46_L	333_I	0.673	0.98
267_M	272_K	0.665	0.98
225_A	415_F	0.664	0.98
240_I	448_V	0.664	0.98
397_M	401_V	0.663	0.98
140_P	194_F	0.662	0.98
261_L	266_P	0.661	0.98
287_F	292_G	0.661	0.98
139_A	191_S	0.660	0.98
192_Y	418_S	0.658	0.98
365_V	369_V	0.657	0.98
258_K	262_A	0.654	0.98
84_G	338_S	0.654	0.98
65_M	297_T	0.653	0.98
149_A	434_I	0.652	0.98
64_S	67_V	0.651	0.98
92_L	299_A	0.648	0.98
53_E	56_V	0.648	0.98
254_K	257_A	0.647	0.98
53_E	383_S	0.647	0.98
81_V	84_G	0.640	0.98
303_M	317_V	0.640	0.98
75_A	343_V	0.639	0.98
375_I	387_Y	0.638	0.98
94_F	322_G	0.635	0.98
178_Y	246_P	0.635	0.98
145_N	148_R	0.631	0.98
331_G	335_G	0.630	0.98
224_A	463_L	0.629	0.98
149_A	430_A	0.629	0.98
379_Y	383_S	0.629	0.98
208_I	215_Q	0.628	0.98
46_L	56_V	0.626	0.98
272_K	277_V	0.625	0.97
101_A	105_T	0.624	0.97
135_D	148_R	0.624	0.97
83_S	87_S	0.624	0.97
49_K	435_F	0.623	0.97
419_Y	456_T	0.623	0.97
236_T	240_I	0.622	0.97
383_S	387_Y	0.622	0.97
67_V	76_F	0.620	0.97
451_V	455_L	0.620	0.97
370_I	374_S	0.613	0.97
103_F	274_L	0.613	0.97
93_V	97_F	0.612	0.97
78_T	82_L	0.608	0.97
182_S	240_I	0.607	0.97
92_L	144_S	0.606	0.97
367_F	402_S	0.605	0.97
422_M	431_G	0.604	0.97
31_L	34_V	0.604	0.97
282_L	286_I	0.604	0.97
64_S	336_L	0.603	0.97
43_I	381_F	0.602	0.97
284_G	305_T	0.602	0.97
88_G	206_K	0.601	0.97
78_T	81_V	0.601	0.97
205_L	215_Q	0.601	0.97
188_K	430_A	0.600	0.97
135_D	183_I	0.599	0.97
181_M	449_G	0.599	0.97
230_I	233_L	0.598	0.97
263_E	270_R	0.598	0.97
93_V	330_Y	0.597	0.97
266_P	271_E	0.597	0.97
257_A	267_M	0.597	0.97
408_L	465_V	0.596	0.97
145_N	199_A	0.594	0.97
264_L	269_I	0.594	0.97
259_A	264_L	0.594	0.97
372_F	460_H	0.592	0.97
205_L	216_I	0.592	0.97
384_G	387_Y	0.590	0.96
145_N	198_M	0.590	0.96
103_F	106_T	0.589	0.96
131_T	135_D	0.588	0.96
265_G	268_K	0.586	0.96
113_A	160_V	0.583	0.96
265_G	270_R	0.583	0.96
229_G	234_L	0.583	0.96
340_L	343_V	0.582	0.96
35_L	39_Y	0.581	0.96
224_A	468_W	0.580	0.96
35_L	340_L	0.580	0.96
231_I	235_V	0.579	0.96
227_L	231_I	0.577	0.96
403_G	406_L	0.577	0.96
32_A	35_L	0.574	0.96
189_T	233_L	0.574	0.96
191_S	200_G	0.574	0.96
198_M	428_G	0.573	0.96
218_W	221_W	0.572	0.96
76_F	339_L	0.572	0.96
378_R	381_F	0.571	0.96
96_A	299_A	0.570	0.96
62_A	300_I	0.567	0.96
148_R	153_V	0.566	0.96
353_F	374_S	0.564	0.95
253_N	259_A	0.564	0.95
144_S	148_R	0.563	0.95
369_V	457_F	0.562	0.95
201_N	418_S	0.562	0.95
85_Y	91_W	0.561	0.95
130_V	206_K	0.560	0.95
145_N	188_K	0.560	0.95
76_F	342_K	0.560	0.95
182_S	186_V	0.559	0.95
277_V	280_L	0.558	0.95
99_L	302_V	0.555	0.95
154_L	434_I	0.555	0.95
92_L	145_N	0.553	0.95
227_L	467_W	0.553	0.95
32_A	36_F	0.553	0.95
354_K	398_L	0.552	0.95
274_L	282_L	0.552	0.95
61_V	65_M	0.551	0.95
388_I	413_L	0.551	0.95
428_G	431_G	0.551	0.95
34_V	38_I	0.550	0.95
420_G	427_G	0.550	0.95
216_I	221_W	0.549	0.95
188_K	428_G	0.546	0.95
431_G	449_G	0.545	0.95
78_T	297_T	0.545	0.95
145_N	187_T	0.545	0.95
400_N	403_G	0.545	0.95
169_E	178_Y	0.545	0.95
247_E	250_K	0.543	0.94
145_N	196_T	0.539	0.94
104_V	109_G	0.539	0.94
139_A	142_T	0.538	0.94
78_T	296_S	0.538	0.94
258_K	261_L	0.536	0.94
110_K	163_A	0.536	0.94
262_A	271_E	0.535	0.94
96_A	430_A	0.535	0.94
379_Y	413_L	0.534	0.94
363_G	398_L	0.534	0.94
340_L	390_A	0.534	0.94
280_L	285_W	0.533	0.94
135_D	186_V	0.533	0.94
39_Y	46_L	0.532	0.94
204_A	410_A	0.531	0.94
92_L	199_A	0.531	0.94
139_A	148_R	0.530	0.94
200_G	430_A	0.529	0.94
414_L	418_S	0.529	0.94
52_P	325_N	0.528	0.94
100_S	326_T	0.527	0.94
139_A	197_A	0.525	0.93
194_F	431_G	0.525	0.93
45_G	51_F	0.525	0.93
145_N	200_G	0.524	0.93
408_L	412_A	0.524	0.93
101_A	320_N	0.523	0.93
245_P	249_K	0.523	0.93
343_V	393_P	0.523	0.93
128_G	237_P	0.523	0.93
234_L	237_P	0.523	0.93
49_K	52_P	0.521	0.93
45_G	60_A	0.520	0.93
456_T	459_V	0.520	0.93
453_T	457_F	0.520	0.93
125_L	129_Y	0.519	0.93
55_V	59_I	0.519	0.93
158_N	162_V	0.518	0.93
92_L	96_A	0.517	0.93
399_A	406_L	0.517	0.93
35_L	38_I	0.517	0.93
365_V	461_I	0.517	0.93
272_K	278_F	0.516	0.93
114_Y	265_G	0.516	0.93
256_I	260_G	0.515	0.93
259_A	265_G	0.515	0.93
427_G	431_G	0.515	0.93
295_E	299_A	0.514	0.93
278_F	282_L	0.514	0.93
187_T	427_G	0.514	0.93
275_L	278_F	0.514	0.93
60_A	64_S	0.512	0.93
284_G	288_S	0.512	0.93
256_I	262_A	0.512	0.93
371_I	395_F	0.510	0.92
231_I	463_L	0.510	0.92
105_T	313_T	0.509	0.92
100_S	144_S	0.509	0.92
200_G	417_N	0.508	0.92
272_K	287_F	0.508	0.92
199_A	429_A	0.507	0.92
272_K	279_V	0.507	0.92
301_V	305_T	0.506	0.92
464_G	468_W	0.506	0.92
301_V	304_A	0.505	0.92
221_W	285_W	0.505	0.92
128_G	178_Y	0.505	0.92
280_L	287_F	0.505	0.92
278_F	287_F	0.503	0.92
66_V	301_V	0.503	0.92
201_N	205_L	0.501	0.92
79_T	83_S	0.501	0.92
461_I	465_V	0.500	0.92

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4f35D	2	0.8994	100	0.373	Contact Map
4r1iA	2	0.9057	100	0.672	Contact Map
4r0cA	3	0.8763	99.9	0.722	Contact Map
2ksfA	1	0.2222	11.4	0.97	Contact Map
2rddB	1	0.0755	7.6	0.972	Contact Map
4pd6A	3	0.7547	6.9	0.972	Contact Map
1ldfA	3	0.4696	6.1	0.973	Contact Map
3tdsE	3	0.478	5.6	0.974	Contact Map
3giaA	1	0.4717	5.1	0.974	Contact Map
3qe7A	2	0.4759	4.6	0.975	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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