AMTB - ECOLI - GREMLIN Contacts

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AMTB - Ammonia channel

UniProt:	P69681	Sequences: MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNNFFGNINWLMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYNA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11821
Length:	428 (393)
Sequences:	5418 (2876)
Seq/√Len:	145.1

ECOLI - AMTB
BACSU - NRGA
SULSO - Q97Z75

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
199_V	389_G	4.607	1.00
44_F	229_I	4.558	1.00
397_K	400_D	4.054	1.00
346_V	350_M	3.574	1.00
293_G	313_A	3.319	1.00
266_G	311_V	3.288	1.00
200_G	396_Y	3.228	1.00
84_Y	159_T	3.195	1.00
301_I	309_I	3.143	1.00
320_G	342_V	2.901	1.00
408_P	411_Q	2.888	1.00
174_L	383_I	2.805	1.00
349_I	378_L	2.719	1.00
227_T	284_C	2.706	1.00
121_I	250_A	2.665	1.00
353_I	369_T	2.620	1.00
75_A	264_I	2.584	1.00
345_I	381_I	2.580	1.00
397_K	401_L	2.533	1.00
375_L	379_E	2.514	1.00
235_F	257_V	2.448	1.00
272_W	278_P	2.444	1.00
180_A	380_S	2.325	1.00
316_A	346_V	2.308	1.00
317_G	343_C	2.279	1.00
105_L	123_V	2.254	1.00
239_A	253_F	2.247	1.00
393_F	397_K	2.231	1.00
39_T	124_A	2.215	1.00
312_V	346_V	2.190	1.00
168_M	174_L	2.187	1.00
294_V	301_I	2.098	1.00
264_I	287_A	2.086	1.00
203_L	393_F	2.077	1.00
208_V	409_E	2.059	1.00
181_L	299_G	2.032	1.00
251_L	255_N	2.030	1.00
152_I	403_V	2.000	1.00
262_A	307_L	1.973	1.00
78_C	127_G	1.960	1.00
378_L	382_A	1.955	1.00
165_I	192_N	1.940	1.00
77_V	158_L	1.928	1.00
407_V	416_L	1.905	1.00
161_S	391_V	1.904	1.00
38_C	240_G	1.896	1.00
165_I	384_T	1.891	1.00
187_T	348_C	1.891	1.00
264_I	283_A	1.874	1.00
88_L	97_F	1.868	1.00
83_V	104_M	1.864	1.00
141_L	145_I	1.843	1.00
70_V	138_V	1.808	1.00
134_V	154_V	1.774	1.00
80_L	155_V	1.758	1.00
224_F	280_L	1.722	1.00
350_M	353_I	1.707	1.00
82_V	258_V	1.698	1.00
196_A	388_S	1.697	1.00
31_D	116_S	1.689	1.00
293_G	309_I	1.687	1.00
372_H	376_V	1.685	1.00
89_A	166_A	1.678	1.00
178_H	379_E	1.676	1.00
90_F	122_H	1.668	1.00
57_L	281_L	1.639	1.00
149_A	399_A	1.636	1.00
72_V	151_L	1.618	1.00
387_W	391_V	1.616	1.00
270_G	315_L	1.598	1.00
79_I	307_L	1.579	1.00
78_C	257_V	1.575	1.00
80_L	163_I	1.556	1.00
223_V	284_C	1.550	1.00
123_V	254_V	1.539	1.00
102_W	119_Q	1.531	1.00
194_A	341_G	1.525	1.00
195_I	389_G	1.517	1.00
411_Q	419_N	1.492	1.00
349_I	374_L	1.481	1.00
196_A	392_A	1.477	1.00
86_Y	119_Q	1.469	1.00
168_M	383_I	1.466	1.00
178_H	376_V	1.461	1.00
400_D	404_G	1.449	1.00
191_I	195_I	1.448	1.00
34_F	37_I	1.447	1.00
30_A	33_A	1.446	1.00
375_L	378_L	1.444	1.00
258_V	307_L	1.440	1.00
208_V	413_R	1.435	1.00
146_R	404_G	1.419	1.00
152_I	399_A	1.416	1.00
68_T	283_A	1.412	1.00
78_C	261_A	1.412	1.00
399_A	403_V	1.385	1.00
181_L	300_Y	1.384	1.00
320_G	338_G	1.382	1.00
379_E	383_I	1.380	1.00
376_V	379_E	1.364	1.00
220_L	281_L	1.362	1.00
80_L	159_T	1.357	1.00
43_L	74_F	1.353	1.00
399_A	402_T	1.335	1.00
43_L	232_I	1.328	1.00
76_L	155_V	1.327	1.00
80_L	84_Y	1.325	1.00
195_I	385_I	1.313	1.00
136_L	336_V	1.310	1.00
367_G	370_M	1.307	1.00
409_E	413_R	1.306	1.00
346_V	353_I	1.299	1.00
169_V	188_V	1.278	1.00
156_V	395_G	1.276	1.00
76_L	151_L	1.276	1.00
32_N	121_I	1.273	1.00
141_L	200_G	1.271	1.00
145_I	405_L	1.268	1.00
203_L	397_K	1.265	1.00
79_I	262_A	1.259	1.00
315_L	319_W	1.253	1.00
32_N	118_Y	1.252	1.00
28_D	31_D	1.249	1.00
187_T	384_T	1.242	1.00
270_G	319_W	1.235	1.00
79_I	265_L	1.235	1.00
65_S	69_Q	1.232	1.00
82_V	307_L	1.232	1.00
73_T	150_V	1.222	1.00
218_H	426_Y	1.218	1.00
242_A	249_A	1.217	1.00
34_F	38_C	1.203	1.00
35_M	117_I	1.202	1.00
74_F	131_C	1.200	1.00
242_A	246_N	1.192	1.00
175_L	380_S	1.184	1.00
219_N	222_M	1.183	1.00
288_I	339_V	1.172	1.00
195_I	199_V	1.170	1.00
192_N	388_S	1.168	1.00
210_F	325_K	1.163	1.00
124_A	253_F	1.162	1.00
414_E	419_N	1.162	1.00
62_N	416_L	1.162	1.00
352_G	374_L	1.156	1.00
31_D	246_N	1.151	1.00
374_L	378_L	1.143	0.99
379_E	382_A	1.142	0.99
140_A	197_G	1.135	0.99
251_L	303_V	1.135	0.99
201_A	330_V	1.133	0.99
231_Y	287_A	1.131	0.99
302_G	356_A	1.127	0.99
55_G	63_V	1.126	0.99
394_I	398_L	1.122	0.99
40_A	232_I	1.114	0.99
43_L	128_S	1.111	0.99
169_V	384_T	1.110	0.99
345_I	385_I	1.107	0.99
304_G	308_I	1.103	0.99
349_I	381_I	1.088	0.99
39_T	121_I	1.088	0.99
411_Q	420_S	1.087	0.99
191_I	385_I	1.085	0.99
146_R	149_A	1.083	0.99
191_I	381_I	1.082	0.99
35_M	121_I	1.078	0.99
341_G	385_I	1.072	0.99
158_L	163_I	1.070	0.99
69_Q	138_V	1.066	0.99
151_L	155_V	1.065	0.99
198_L	330_V	1.062	0.99
190_H	193_A	1.058	0.99
80_L	158_L	1.058	0.99
302_G	305_G	1.056	0.99
46_T	131_C	1.055	0.99
90_F	126_Q	1.054	0.99
348_C	381_I	1.053	0.99
57_L	223_V	1.048	0.99
385_I	389_G	1.048	0.99
410_E	414_E	1.047	0.99
309_I	350_M	1.045	0.99
399_A	404_G	1.043	0.99
266_G	314_G	1.040	0.99
65_S	421_H	1.036	0.99
109_E	113_V	1.030	0.99
258_V	303_V	1.026	0.99
257_V	260_T	1.020	0.99
202_Y	330_V	1.020	0.99
171_G	176_A	1.018	0.99
409_E	412_E	1.015	0.99
398_L	401_L	1.015	0.99
48_P	225_T	1.014	0.99
159_T	163_I	1.013	0.99
320_G	324_L	1.009	0.99
33_A	37_I	1.005	0.99
187_T	191_I	1.003	0.99
308_I	312_V	1.002	0.99
311_V	315_L	1.002	0.99
179_G	376_V	0.996	0.99
191_I	345_I	0.994	0.99
386_V	390_V	0.988	0.98
330_V	338_G	0.987	0.98
262_A	311_V	0.987	0.98
165_I	387_W	0.986	0.98
40_A	253_F	0.984	0.98
63_V	218_H	0.984	0.98
391_V	395_G	0.983	0.98
260_T	263_A	0.981	0.98
102_W	105_L	0.974	0.98
242_A	248_I	0.974	0.98
111_T	115_G	0.971	0.98
395_G	399_A	0.970	0.98
199_V	393_F	0.964	0.98
199_V	203_L	0.964	0.98
396_Y	405_L	0.963	0.98
66_M	142_A	0.961	0.98
180_A	348_C	0.961	0.98
312_V	316_A	0.961	0.98
104_M	304_G	0.957	0.98
209_G	215_F	0.955	0.98
117_I	243_G	0.953	0.98
35_M	243_G	0.950	0.98
145_I	204_I	0.948	0.98
59_R	143_E	0.946	0.98
263_A	286_G	0.945	0.98
285_S	339_V	0.943	0.98
352_G	377_Q	0.942	0.98
266_G	315_L	0.936	0.98
353_I	374_L	0.935	0.98
357_S	370_M	0.935	0.98
203_L	400_D	0.935	0.98
231_Y	257_V	0.934	0.98
122_H	243_G	0.934	0.98
120_Y	251_L	0.934	0.98
160_L	391_V	0.932	0.98
127_G	257_V	0.931	0.98
389_G	393_F	0.931	0.98
72_V	268_I	0.927	0.98
265_L	269_F	0.922	0.98
400_D	403_V	0.921	0.98
289_A	343_C	0.919	0.98
52_L	225_T	0.919	0.98
406_R	412_E	0.917	0.98
337_F	341_G	0.914	0.97
301_I	354_F	0.912	0.97
44_F	232_I	0.911	0.97
372_H	375_L	0.908	0.97
399_A	405_L	0.906	0.97
63_V	425_A	0.905	0.97
73_T	154_V	0.903	0.97
79_I	83_V	0.903	0.97
224_F	284_C	0.902	0.97
234_W	295_T	0.901	0.97
297_A	301_I	0.896	0.97
138_V	150_V	0.893	0.97
373_Q	376_V	0.893	0.97
120_Y	254_V	0.885	0.97
321_V	338_G	0.882	0.97
312_V	350_M	0.879	0.97
109_E	112_A	0.876	0.97
41_L	236_G	0.869	0.97
91_G	99_N	0.866	0.97
319_W	323_M	0.865	0.96
252_A	298_C	0.865	0.96
172_G	176_A	0.864	0.96
174_L	379_E	0.861	0.96
272_W	276_G	0.861	0.96
324_L	338_G	0.861	0.96
120_Y	250_A	0.860	0.96
58_I	334_C	0.860	0.96
29_K	244_T	0.855	0.96
202_Y	389_G	0.854	0.96
174_L	178_H	0.852	0.96
262_A	266_G	0.847	0.96
390_V	394_I	0.846	0.96
309_I	354_F	0.845	0.96
378_L	381_I	0.844	0.96
270_G	314_G	0.839	0.96
149_A	403_V	0.837	0.96
368_V	371_G	0.835	0.96
269_F	273_A	0.833	0.96
33_A	245_A	0.832	0.96
382_A	386_V	0.831	0.96
186_G	296_P	0.828	0.96
259_A	294_V	0.823	0.95
195_I	341_G	0.822	0.95
126_Q	241_S	0.821	0.95
255_N	298_C	0.820	0.95
289_A	339_V	0.818	0.95
268_I	278_P	0.817	0.95
350_M	354_F	0.812	0.95
111_T	114_M	0.812	0.95
52_L	221_P	0.810	0.95
63_V	67_L	0.809	0.95
59_R	215_F	0.809	0.95
30_A	245_A	0.808	0.95
62_N	143_E	0.804	0.95
46_T	70_V	0.803	0.95
172_G	177_S	0.803	0.95
323_M	328_L	0.800	0.95
222_M	225_T	0.800	0.95
300_Y	355_A	0.797	0.94
305_G	308_I	0.796	0.94
238_N	295_T	0.792	0.94
165_I	168_M	0.792	0.94
395_G	398_L	0.791	0.94
393_F	400_D	0.789	0.94
320_G	323_M	0.788	0.94
66_M	70_V	0.788	0.94
345_I	349_I	0.787	0.94
110_L	113_V	0.785	0.94
155_V	159_T	0.784	0.94
374_L	381_I	0.782	0.94
29_K	32_N	0.778	0.94
394_I	397_K	0.778	0.94
165_I	388_S	0.772	0.93
263_A	266_G	0.772	0.93
92_E	101_N	0.772	0.93
84_Y	163_I	0.771	0.93
220_L	280_L	0.770	0.93
81_W	166_A	0.767	0.93
35_M	39_T	0.766	0.93
208_V	212_K	0.765	0.93
112_A	115_G	0.762	0.93
33_A	38_C	0.760	0.93
192_N	196_A	0.759	0.93
411_Q	414_E	0.759	0.93
88_L	163_I	0.758	0.93
156_V	160_L	0.758	0.93
187_T	292_V	0.757	0.93
73_T	138_V	0.755	0.93
148_S	152_I	0.754	0.93
52_L	222_M	0.753	0.93
279_S	423_E	0.752	0.93
161_S	392_A	0.750	0.92
293_G	346_V	0.747	0.92
293_G	350_M	0.745	0.92
325_K	335_D	0.744	0.92
266_G	270_G	0.742	0.92
199_V	202_Y	0.742	0.92
297_A	309_I	0.742	0.92
167_H	171_G	0.736	0.92
68_T	147_F	0.734	0.92
294_V	309_I	0.733	0.92
43_L	131_C	0.732	0.92
392_A	396_Y	0.732	0.92
117_I	121_I	0.731	0.92
145_I	396_Y	0.729	0.91
27_A	32_N	0.728	0.91
118_Y	121_I	0.725	0.91
195_I	345_I	0.723	0.91
270_G	318_L	0.723	0.91
102_W	107_N	0.723	0.91
76_L	265_L	0.722	0.91
64_L	280_L	0.721	0.91
110_L	114_M	0.720	0.91
198_L	202_Y	0.720	0.91
407_V	412_E	0.719	0.91
82_V	123_V	0.718	0.91
157_W	196_A	0.718	0.91
137_I	196_A	0.717	0.91
321_V	335_D	0.717	0.91
285_S	314_G	0.715	0.91
187_T	381_I	0.713	0.90
138_V	141_L	0.712	0.90
323_M	327_L	0.712	0.90
223_V	281_L	0.712	0.90
102_W	108_I	0.710	0.90
305_G	370_M	0.708	0.90
145_I	200_G	0.707	0.90
67_L	224_F	0.706	0.90
341_G	345_I	0.705	0.90
78_C	287_A	0.704	0.90
141_L	396_Y	0.704	0.90
50_I	228_A	0.701	0.90
144_R	331_D	0.699	0.90
129_F	237_F	0.698	0.90
293_G	343_C	0.697	0.89
277_K	422_G	0.695	0.89
161_S	395_G	0.694	0.89
28_D	32_N	0.693	0.89
65_S	138_V	0.691	0.89
32_N	117_I	0.690	0.89
181_L	355_A	0.689	0.89
206_K	329_R	0.685	0.89
86_Y	122_H	0.683	0.89
147_F	421_H	0.681	0.88
59_R	209_G	0.680	0.88
153_F	392_A	0.679	0.88
87_S	100_I	0.678	0.88
87_S	91_G	0.677	0.88
139_G	332_D	0.677	0.88
183_F	252_A	0.676	0.88
148_S	272_W	0.675	0.88
132_I	135_G	0.674	0.88
86_Y	90_F	0.673	0.88
169_V	176_A	0.672	0.88
72_V	147_F	0.671	0.88
204_I	405_L	0.669	0.88
195_I	337_F	0.668	0.87
314_G	317_G	0.668	0.87
130_A	158_L	0.667	0.87
197_G	201_A	0.666	0.87
274_L	318_L	0.663	0.87
153_F	196_A	0.661	0.87
50_I	132_I	0.660	0.87
245_A	249_A	0.657	0.87
316_A	342_V	0.656	0.86
386_V	393_F	0.656	0.86
356_A	370_M	0.655	0.86
324_L	337_F	0.655	0.86
100_I	103_L	0.655	0.86
92_E	95_N	0.654	0.86
242_A	252_A	0.652	0.86
66_M	69_Q	0.652	0.86
27_A	113_V	0.650	0.86
78_C	131_C	0.650	0.86
170_W	188_V	0.649	0.86
280_L	284_C	0.648	0.86
313_A	346_V	0.647	0.86
271_E	282_G	0.645	0.86
205_G	406_R	0.645	0.86
153_F	157_W	0.642	0.85
192_N	384_T	0.639	0.85
180_A	187_T	0.638	0.85
319_W	324_L	0.636	0.85
113_V	116_S	0.636	0.85
259_A	313_A	0.636	0.85
88_L	164_P	0.634	0.85
282_G	317_G	0.632	0.84
314_G	346_V	0.631	0.84
64_L	423_E	0.631	0.84
390_V	393_F	0.629	0.84
254_V	303_V	0.629	0.84
268_I	283_A	0.627	0.84
200_G	392_A	0.626	0.84
36_M	40_A	0.625	0.84
48_P	229_I	0.622	0.83
153_F	396_Y	0.621	0.83
69_Q	142_A	0.620	0.83
74_F	257_V	0.617	0.83
78_C	258_V	0.616	0.83
351_T	374_L	0.616	0.83
62_N	407_V	0.616	0.83
195_I	388_S	0.616	0.83
382_A	385_I	0.615	0.83
238_N	241_S	0.615	0.83
169_V	180_A	0.615	0.83
45_M	238_N	0.612	0.82
305_G	356_A	0.611	0.82
39_T	128_S	0.610	0.82
141_L	150_V	0.609	0.82
348_C	351_T	0.608	0.82
270_G	316_A	0.607	0.82
36_M	253_F	0.607	0.82
191_I	341_G	0.606	0.82
86_Y	102_W	0.605	0.82
146_R	411_Q	0.605	0.82
74_F	127_G	0.605	0.82
263_A	293_G	0.605	0.82
418_V	424_N	0.604	0.82
190_H	340_H	0.603	0.82
289_A	317_G	0.598	0.81
34_F	242_A	0.598	0.81
234_W	291_L	0.598	0.81
147_F	278_P	0.597	0.81
308_I	354_F	0.596	0.81
356_A	359_L	0.596	0.81
81_W	89_A	0.596	0.81
124_A	127_G	0.593	0.80
137_I	157_W	0.592	0.80
338_G	341_G	0.592	0.80
274_L	322_T	0.591	0.80
190_H	348_C	0.591	0.80
128_S	189_V	0.591	0.80
45_M	230_L	0.589	0.80
88_L	100_I	0.589	0.80
370_M	374_L	0.589	0.80
101_N	104_M	0.588	0.80
33_A	40_A	0.587	0.80
302_G	370_M	0.587	0.80
168_M	387_W	0.585	0.80
175_L	180_A	0.583	0.79
75_A	265_L	0.583	0.79
237_F	295_T	0.582	0.79
36_M	250_A	0.582	0.79
69_Q	150_V	0.581	0.79
143_E	215_F	0.580	0.79
93_G	167_H	0.579	0.79
91_G	102_W	0.579	0.79
410_E	413_R	0.577	0.79
161_S	388_S	0.577	0.79
110_L	115_G	0.577	0.79
357_S	360_G	0.577	0.79
324_L	328_L	0.574	0.78
207_R	331_D	0.573	0.78
227_T	287_A	0.571	0.78
65_S	141_L	0.571	0.78
338_G	342_V	0.570	0.78
123_V	127_G	0.570	0.78
414_E	418_V	0.569	0.78
251_L	359_L	0.569	0.78
238_N	256_T	0.568	0.78
237_F	256_T	0.567	0.77
128_S	253_F	0.563	0.77
248_I	251_L	0.563	0.77
74_F	78_C	0.561	0.77
375_L	382_A	0.557	0.76
87_S	101_N	0.556	0.76
71_T	287_A	0.556	0.76
203_L	396_Y	0.554	0.76
73_T	135_G	0.554	0.76
312_V	354_F	0.554	0.76
67_L	280_L	0.553	0.76
376_V	380_S	0.551	0.75
67_L	221_P	0.549	0.75
300_Y	360_G	0.547	0.75
155_V	265_L	0.547	0.75
323_M	330_V	0.546	0.75
73_T	134_V	0.545	0.75
352_G	369_T	0.545	0.75
109_E	114_M	0.544	0.75
351_T	373_Q	0.544	0.75
137_I	141_L	0.544	0.75
84_Y	158_L	0.543	0.74
384_T	388_S	0.542	0.74
249_A	252_A	0.542	0.74
59_R	62_N	0.541	0.74
39_T	253_F	0.540	0.74
248_I	252_A	0.540	0.74
111_T	116_S	0.539	0.74
387_W	390_V	0.538	0.74
77_V	134_V	0.538	0.74
89_A	163_I	0.536	0.73
152_I	395_G	0.536	0.73
66_M	138_V	0.536	0.73
269_F	272_W	0.535	0.73
367_G	371_G	0.535	0.73
307_L	311_V	0.535	0.73
184_A	241_S	0.534	0.73
301_I	306_A	0.534	0.73
302_G	306_A	0.534	0.73
151_L	272_W	0.529	0.72
263_A	288_I	0.529	0.72
279_S	282_G	0.528	0.72
82_V	304_G	0.528	0.72
141_L	154_V	0.528	0.72
61_K	215_F	0.527	0.72
373_Q	377_Q	0.527	0.72
199_V	385_I	0.527	0.72
312_V	353_I	0.526	0.72
50_I	69_Q	0.526	0.72
134_V	141_L	0.524	0.72
187_T	380_S	0.524	0.72
153_F	399_A	0.522	0.71
69_Q	141_L	0.521	0.71
305_G	354_F	0.520	0.71
31_D	244_T	0.520	0.71
51_A	67_L	0.520	0.71
117_I	122_H	0.519	0.71
388_S	392_A	0.518	0.71
103_L	106_K	0.516	0.71
194_A	344_G	0.516	0.71
367_G	373_Q	0.516	0.71
248_I	360_G	0.516	0.71
134_V	158_L	0.516	0.71
324_L	342_V	0.515	0.70
190_H	260_T	0.515	0.70
91_G	167_H	0.514	0.70
155_V	158_L	0.514	0.70
29_K	245_A	0.513	0.70
275_R	322_T	0.512	0.70
46_T	135_G	0.512	0.70
257_V	261_A	0.512	0.70
27_A	31_D	0.511	0.70
267_W	282_G	0.511	0.70
44_F	48_P	0.510	0.70
392_A	395_G	0.510	0.70
188_V	384_T	0.510	0.70
38_C	128_S	0.509	0.70
122_H	126_Q	0.508	0.69
386_V	389_G	0.508	0.69
110_L	176_A	0.507	0.69
95_N	177_S	0.505	0.69
94_N	97_F	0.504	0.69
146_R	402_T	0.504	0.69
42_V	236_G	0.504	0.69
301_I	305_G	0.501	0.68
120_Y	303_V	0.500	0.68

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
2b2hA	3	0.9065	100	0.067	Contact Map
1u7gA	3	0.8949	100	0.121	Contact Map
3hd6A	3	0.8785	100	0.287	Contact Map
3b9wA	3	0.8224	100	0.313	Contact Map
4tphA	2	0.4673	37.6	0.971	Contact Map
1pw4A	1	0.4556	36.8	0.971	Contact Map
4xnjA	1	0.4673	35.3	0.972	Contact Map
4j05A	3	0.8037	31.6	0.972	Contact Map
2qi9A	2	0.493	30.5	0.973	Contact Map
4pypA	1	0.4486	19.8	0.975	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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