YFEO - ECOLI - GREMLIN Contacts

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YFEO - Putative ion-transport protein YfeO

UniProt:	P67729	Sequences: MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPGLIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRMEWTILASAGTIGALFGTPVAAALIFSQTLNGSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHAMMHQMKNPVLVLGIGGFILGILGVIGGPVSLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPNTTLLPLLCIVMLPAWLLLAGKPMMMVNRPKQQPPHDNV	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG14156
Length:	418 (385)
Sequences:	5346 (3777)
Seq/√Len:	192.5

ECOLI - YFEO CLCA CLCB
HALSA - Q9HPN8
SULSO - Q97U23

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
358_G	390_V	4.149	1.00
302_F	338_M	3.498	1.00
110_G	115_V	3.387	1.00
242_W	246_R	3.333	1.00
117_L	315_A	3.272	1.00
115_V	315_A	3.197	1.00
116_S	308_K	3.148	1.00
116_S	312_L	3.111	1.00
354_C	390_V	3.061	1.00
127_N	151_A	2.912	1.00
72_L	76_F	2.880	1.00
88_E	91_I	2.792	1.00
232_I	335_L	2.791	1.00
26_I	130_L	2.759	1.00
63_L	66_T	2.646	1.00
32_K	36_V	2.642	1.00
271_L	311_A	2.494	1.00
229_V	339_L	2.467	1.00
67_G	71_G	2.463	1.00
246_R	250_M	2.451	1.00
226_G	354_C	2.445	1.00
236_A	359_I	2.415	1.00
230_A	234_I	2.327	1.00
168_L	372_F	2.323	1.00
371_L	388_C	2.313	1.00
305_A	338_M	2.307	1.00
222_D	351_T	2.233	1.00
77_S	80_H	2.170	1.00
246_R	249_A	2.157	1.00
272_G	280_L	2.152	1.00
361_L	391_M	2.146	1.00
139_L	143_N	2.140	1.00
243_C	313_V	2.138	1.00
16_A	20_G	2.136	1.00
63_L	67_G	2.122	1.00
236_A	335_L	2.106	1.00
234_I	397_L	2.093	1.00
36_V	40_L	2.025	1.00
140_P	143_N	2.004	1.00
287_M	333_V	1.983	1.00
237_G	362_V	1.968	1.00
251_M	318_S	1.964	1.00
110_G	117_L	1.962	1.00
19_I	23_S	1.961	1.00
66_T	113_G	1.951	1.00
110_G	320_F	1.944	1.00
328_A	363_V	1.919	1.00
267_I	314_V	1.868	1.00
247_L	317_A	1.866	1.00
224_L	228_I	1.864	1.00
305_A	335_L	1.861	1.00
100_L	129_A	1.857	1.00
298_T	338_M	1.835	1.00
78_Q	81_A	1.807	1.00
135_G	144_R	1.803	1.00
73_V	80_H	1.761	1.00
309_L	331_V	1.754	1.00
24_S	28_I	1.748	1.00
235_A	239_V	1.741	1.00
25_L	203_F	1.736	1.00
27_L	123_I	1.733	1.00
290_M	334_A	1.726	1.00
305_A	331_V	1.724	1.00
33_I	108_I	1.680	1.00
227_A	393_P	1.667	1.00
264_G	318_S	1.652	1.00
240_A	312_L	1.651	1.00
23_S	127_N	1.629	1.00
357_L	391_M	1.606	1.00
270_I	274_I	1.600	1.00
87_C	128_I	1.592	1.00
169_I	173_T	1.581	1.00
28_I	203_F	1.576	1.00
286_E	330_F	1.571	1.00
37_L	112_A	1.566	1.00
110_G	315_A	1.539	1.00
226_G	390_V	1.519	1.00
231_A	397_L	1.512	1.00
301_Y	337_L	1.511	1.00
233_A	335_L	1.508	1.00
249_A	253_Q	1.504	1.00
133_A	137_R	1.501	1.00
365_R	399_A	1.494	1.00
71_G	75_R	1.488	1.00
227_A	231_A	1.481	1.00
230_A	393_P	1.479	1.00
225_S	343_V	1.465	1.00
83_P	88_E	1.457	1.00
149_I	189_P	1.457	1.00
104_I	126_V	1.451	1.00
230_A	394_A	1.446	1.00
220_M	224_L	1.444	1.00
328_A	359_I	1.434	1.00
395_W	399_A	1.430	1.00
62_V	65_L	1.419	1.00
74_I	79_G	1.418	1.00
375_A	384_L	1.408	1.00
21_I	199_T	1.408	1.00
73_V	77_S	1.407	1.00
192_A	196_G	1.399	1.00
30_V	34_A	1.398	1.00
333_V	352_V	1.395	1.00
329_V	356_I	1.394	1.00
233_A	358_G	1.384	1.00
69_A	73_V	1.376	1.00
233_A	359_I	1.374	1.00
339_L	343_V	1.368	1.00
305_A	334_A	1.366	1.00
70_V	74_I	1.357	1.00
17_V	195_A	1.353	1.00
106_A	321_R	1.345	1.00
154_G	192_A	1.345	1.00
265_G	269_G	1.344	1.00
161_G	201_G	1.338	1.00
153_A	157_G	1.329	1.00
103_L	321_R	1.327	1.00
132_V	144_R	1.317	1.00
353_S	378_V	1.315	1.00
40_L	44_R	1.310	1.00
303_L	307_I	1.307	1.00
59_I	66_T	1.307	1.00
360_V	364_T	1.301	1.00
61_G	64_T	1.298	1.00
337_L	352_V	1.279	1.00
31_M	34_A	1.274	1.00
25_L	29_V	1.261	1.00
390_V	394_A	1.261	1.00
231_A	235_A	1.259	1.00
19_I	147_W	1.256	1.00
23_S	154_G	1.249	1.00
153_A	170_F	1.248	1.00
301_Y	338_M	1.247	1.00
101_P	105_V	1.242	1.00
229_V	233_A	1.240	1.00
360_V	370_S	1.232	1.00
55_S	58_W	1.228	1.00
16_A	19_I	1.227	1.00
301_Y	334_A	1.225	1.00
27_L	158_A	1.221	1.00
62_V	66_T	1.208	1.00
41_L	113_G	1.208	1.00
66_T	69_A	1.207	1.00
149_I	175_N	1.205	1.00
251_M	264_G	1.197	1.00
186_L	190_L	1.191	1.00
268_L	311_A	1.184	1.00
73_V	78_Q	1.182	1.00
71_G	76_F	1.182	1.00
362_V	394_A	1.179	1.00
374_A	387_L	1.177	1.00
247_L	313_V	1.177	1.00
150_L	192_A	1.173	1.00
85_P	88_E	1.172	1.00
238_M	398_L	1.158	1.00
86_A	90_L	1.158	1.00
256_N	259_L	1.153	1.00
152_S	174_L	1.146	1.00
225_S	339_L	1.146	1.00
350_I	383_L	1.145	1.00
28_I	199_T	1.145	1.00
12_L	16_A	1.136	1.00
276_G	307_I	1.133	1.00
74_I	81_A	1.132	1.00
36_V	39_N	1.125	1.00
85_P	91_I	1.119	1.00
136_A	144_R	1.115	1.00
35_S	39_N	1.115	1.00
234_I	398_L	1.105	1.00
93_A	132_V	1.105	1.00
164_V	372_F	1.095	1.00
268_L	315_A	1.091	1.00
335_L	359_I	1.087	1.00
122_P	160_F	1.085	1.00
340_H	346_V	1.079	1.00
74_I	78_Q	1.077	1.00
371_L	391_M	1.075	1.00
340_H	348_A	1.070	1.00
71_G	74_I	1.065	1.00
97_P	133_A	1.065	1.00
302_F	306_V	1.058	1.00
82_G	103_L	1.057	1.00
58_W	64_T	1.052	1.00
288_Q	292_A	1.050	1.00
279_S	311_A	1.047	1.00
29_V	104_I	1.042	1.00
297_S	300_D	1.042	1.00
33_I	36_V	1.037	1.00
153_A	189_P	1.036	1.00
66_T	109_L	1.036	1.00
83_P	91_I	1.032	1.00
37_L	41_L	1.028	1.00
237_G	363_V	1.017	1.00
26_I	30_V	1.017	1.00
28_I	32_K	1.015	1.00
257_P	260_V	1.013	1.00
82_G	321_R	1.011	1.00
117_L	322_G	1.011	1.00
64_T	67_G	1.006	1.00
72_L	77_S	1.004	1.00
357_L	374_A	0.999	1.00
191_M	195_A	0.990	0.99
67_G	70_V	0.990	0.99
270_I	273_V	0.989	0.99
383_L	387_L	0.980	0.99
21_I	25_L	0.978	0.99
197_A	201_G	0.976	0.99
82_G	85_P	0.974	0.99
159_L	173_T	0.974	0.99
365_R	398_L	0.973	0.99
59_I	63_L	0.968	0.99
222_D	226_G	0.967	0.99
345_A	351_T	0.966	0.99
30_V	107_L	0.962	0.99
64_T	266_F	0.961	0.99
99_A	125_T	0.957	0.99
29_V	33_I	0.957	0.99
157_G	193_A	0.956	0.99
221_T	225_S	0.953	0.99
153_A	193_A	0.951	0.99
87_C	90_L	0.948	0.99
29_V	32_K	0.948	0.99
16_A	31_M	0.945	0.99
83_P	86_A	0.943	0.99
283_G	330_F	0.943	0.99
201_G	206_P	0.934	0.99
22_A	130_L	0.932	0.99
299_S	303_L	0.929	0.99
348_A	352_V	0.927	0.99
69_A	109_L	0.916	0.99
228_I	339_L	0.914	0.99
286_E	289_Q	0.913	0.99
199_T	203_F	0.911	0.99
346_V	351_T	0.910	0.99
230_A	358_G	0.906	0.99
67_G	265_G	0.905	0.99
62_V	67_G	0.904	0.99
116_S	268_L	0.900	0.99
64_T	269_G	0.898	0.99
250_M	254_M	0.895	0.99
309_L	313_V	0.892	0.99
167_A	190_L	0.891	0.99
54_D	58_W	0.890	0.99
367_G	370_S	0.890	0.99
86_A	91_I	0.889	0.99
339_L	351_T	0.889	0.99
64_T	262_G	0.887	0.99
71_G	261_L	0.885	0.99
330_F	334_A	0.882	0.99
264_G	311_A	0.881	0.99
22_A	26_I	0.881	0.99
26_I	100_L	0.879	0.99
120_E	159_L	0.877	0.99
234_I	394_A	0.874	0.99
351_T	355_A	0.873	0.99
21_I	195_A	0.873	0.99
60_I	63_L	0.867	0.99
84_D	124_M	0.867	0.99
304_L	334_A	0.862	0.99
278_V	304_L	0.861	0.99
313_V	317_A	0.861	0.99
240_A	315_A	0.859	0.99
279_S	307_I	0.857	0.99
364_T	377_V	0.854	0.98
243_C	309_L	0.852	0.98
87_C	91_I	0.850	0.98
250_M	253_Q	0.849	0.98
278_V	289_Q	0.846	0.98
108_I	112_A	0.844	0.98
238_M	401_K	0.844	0.98
340_H	351_T	0.840	0.98
74_I	77_S	0.840	0.98
251_M	260_V	0.838	0.98
76_F	80_H	0.837	0.98
325_I	377_V	0.837	0.98
207_H	211_P	0.833	0.98
283_G	287_M	0.828	0.98
83_P	121_H	0.826	0.98
16_A	23_S	0.826	0.98
59_I	62_V	0.826	0.98
71_G	258_V	0.824	0.98
37_L	108_I	0.818	0.98
124_M	169_I	0.813	0.98
68_I	71_G	0.813	0.98
255_K	263_I	0.811	0.98
393_P	397_L	0.811	0.98
117_L	316_A	0.804	0.98
56_P	59_I	0.803	0.98
127_N	131_A	0.799	0.98
259_L	262_G	0.796	0.98
238_M	242_W	0.796	0.98
30_V	126_V	0.795	0.98
290_M	337_L	0.793	0.98
115_V	320_F	0.792	0.98
15_P	140_P	0.788	0.97
92_G	96_P	0.786	0.97
65_L	69_A	0.785	0.97
102_G	106_A	0.782	0.97
236_A	239_V	0.781	0.97
219_E	222_D	0.781	0.97
166_A	169_I	0.781	0.97
165_A	369_L	0.780	0.97
233_A	362_V	0.778	0.97
16_A	191_M	0.778	0.97
349_A	352_V	0.776	0.97
235_A	397_L	0.771	0.97
31_M	35_S	0.770	0.97
62_V	69_A	0.770	0.97
64_T	265_G	0.765	0.97
41_L	44_R	0.760	0.97
38_Q	42_W	0.759	0.97
85_P	90_L	0.757	0.97
276_G	303_L	0.755	0.97
364_T	367_G	0.754	0.97
248_H	252_H	0.754	0.97
392_L	396_L	0.752	0.97
239_V	243_C	0.750	0.97
63_L	265_G	0.750	0.97
166_A	170_F	0.748	0.96
68_I	75_R	0.745	0.96
123_I	326_F	0.745	0.96
53_Q	57_L	0.742	0.96
73_V	76_F	0.742	0.96
54_D	57_L	0.740	0.96
266_F	271_L	0.739	0.96
103_L	155_T	0.738	0.96
259_L	263_I	0.735	0.96
239_V	309_L	0.731	0.96
66_T	70_V	0.727	0.96
65_L	113_G	0.725	0.96
284_L	326_F	0.723	0.96
173_T	316_A	0.718	0.96
66_T	73_V	0.718	0.96
231_A	393_P	0.718	0.96
83_P	90_L	0.718	0.96
352_V	355_A	0.716	0.96
289_Q	294_Q	0.716	0.96
276_G	279_S	0.715	0.95
96_P	133_A	0.714	0.95
369_L	373_M	0.714	0.95
262_G	266_F	0.714	0.95
157_G	197_A	0.714	0.95
94_P	136_A	0.713	0.95
261_L	265_G	0.712	0.95
268_L	271_L	0.712	0.95
350_I	354_C	0.707	0.95
76_F	79_G	0.707	0.95
82_G	86_A	0.707	0.95
144_R	148_T	0.704	0.95
303_L	306_V	0.703	0.95
387_L	391_M	0.700	0.95
139_L	142_V	0.700	0.95
80_H	102_G	0.698	0.95
58_W	61_G	0.697	0.95
31_M	159_L	0.696	0.95
226_G	350_I	0.696	0.95
306_V	310_A	0.695	0.95
166_A	370_S	0.694	0.95
247_L	251_M	0.692	0.95
193_A	197_A	0.687	0.94
67_G	262_G	0.687	0.94
283_G	308_K	0.682	0.94
75_R	78_Q	0.682	0.94
354_C	358_G	0.681	0.94
59_I	70_V	0.680	0.94
293_N	297_S	0.679	0.94
145_M	148_T	0.677	0.94
337_L	348_A	0.676	0.94
69_A	72_L	0.674	0.94
135_G	151_A	0.674	0.94
69_A	74_I	0.671	0.94
157_G	381_T	0.671	0.94
240_A	331_V	0.669	0.94
59_I	75_R	0.669	0.94
28_I	204_F	0.669	0.94
116_S	315_A	0.667	0.93
30_V	121_H	0.667	0.93
230_A	233_A	0.667	0.93
242_W	245_P	0.666	0.93
34_A	119_P	0.665	0.93
190_L	392_L	0.665	0.93
63_L	79_G	0.664	0.93
103_L	122_P	0.663	0.93
221_T	224_L	0.661	0.93
24_S	34_A	0.659	0.93
237_G	361_L	0.656	0.93
152_S	329_V	0.655	0.93
73_V	79_G	0.654	0.93
60_I	64_T	0.652	0.93
60_I	270_I	0.651	0.93
312_L	331_V	0.651	0.93
27_L	31_M	0.651	0.93
103_L	121_H	0.650	0.93
258_V	261_L	0.647	0.92
338_M	341_E	0.646	0.92
290_M	352_V	0.646	0.92
199_T	202_L	0.645	0.92
366_D	369_L	0.644	0.92
91_I	174_L	0.644	0.92
65_L	68_I	0.643	0.92
71_G	262_G	0.643	0.92
397_L	400_G	0.639	0.92
73_V	102_G	0.637	0.92
237_G	359_I	0.636	0.92
23_S	27_L	0.636	0.92
82_G	87_C	0.635	0.92
143_N	315_A	0.634	0.92
195_A	198_L	0.631	0.91
271_L	274_I	0.630	0.91
359_I	363_V	0.629	0.91
19_I	131_A	0.628	0.91
375_A	381_T	0.627	0.91
62_V	70_V	0.627	0.91
244_L	247_L	0.627	0.91
374_A	383_L	0.627	0.91
298_T	341_E	0.626	0.91
60_I	67_G	0.625	0.91
337_L	340_H	0.623	0.91
234_I	362_V	0.622	0.91
121_H	321_R	0.622	0.91
190_L	368_W	0.621	0.91
308_K	319_G	0.621	0.91
372_F	375_A	0.620	0.91
338_M	342_H	0.619	0.91
35_S	38_Q	0.619	0.91
68_I	262_G	0.617	0.91
330_F	333_V	0.613	0.90
321_R	324_R	0.613	0.90
68_I	72_L	0.611	0.90
226_G	230_A	0.611	0.90
34_A	38_Q	0.611	0.90
96_P	99_A	0.611	0.90
336_G	340_H	0.610	0.90
241_V	245_P	0.610	0.90
294_Q	297_S	0.607	0.90
23_S	31_M	0.605	0.90
34_A	111_L	0.605	0.90
38_Q	41_L	0.604	0.90
111_L	123_I	0.603	0.90
229_V	355_A	0.603	0.90
74_I	80_H	0.603	0.90
63_L	70_V	0.602	0.89
41_L	62_V	0.602	0.89
285_D	289_Q	0.600	0.89
28_I	31_M	0.599	0.89
71_G	259_L	0.599	0.89
300_D	303_L	0.599	0.89
186_L	197_A	0.598	0.89
200_T	204_F	0.598	0.89
277_P	280_L	0.597	0.89
329_V	359_I	0.597	0.89
278_V	281_F	0.595	0.89
16_A	28_I	0.595	0.89
237_G	241_V	0.594	0.89
332_G	355_A	0.593	0.89
286_E	334_A	0.591	0.89
14_L	18_A	0.590	0.89
83_P	321_R	0.590	0.89
17_V	191_M	0.586	0.88
188_A	317_A	0.585	0.88
61_G	69_A	0.583	0.88
16_A	192_A	0.582	0.88
230_A	389_I	0.582	0.88
364_T	373_M	0.582	0.88
133_A	136_A	0.582	0.88
69_A	78_Q	0.581	0.88
149_I	170_F	0.581	0.88
12_L	23_S	0.580	0.88
59_I	65_L	0.580	0.88
121_H	376_V	0.579	0.88
32_K	35_S	0.578	0.88
248_H	321_R	0.576	0.87
70_V	81_A	0.575	0.87
232_I	339_L	0.572	0.87
66_T	112_A	0.571	0.87
159_L	316_A	0.571	0.87
171_S	189_P	0.571	0.87
283_G	329_V	0.570	0.87
111_L	122_P	0.569	0.87
186_L	395_W	0.569	0.87
19_I	26_I	0.568	0.87
119_P	125_T	0.567	0.87
103_L	125_T	0.566	0.86
290_M	301_Y	0.565	0.86
116_S	311_A	0.564	0.86
237_G	313_V	0.563	0.86
220_M	223_I	0.562	0.86
90_L	132_V	0.561	0.86
224_L	227_A	0.560	0.86
126_V	387_L	0.560	0.86
62_V	74_I	0.560	0.86
226_G	229_V	0.559	0.86
332_G	336_G	0.558	0.86
107_L	364_T	0.557	0.86
125_T	321_R	0.556	0.85
124_M	325_I	0.554	0.85
86_A	103_L	0.553	0.85
165_A	366_D	0.551	0.85
13_S	396_L	0.551	0.85
20_G	31_M	0.551	0.85
152_S	156_I	0.550	0.85
39_N	236_A	0.550	0.85
62_V	73_V	0.550	0.85
72_L	75_R	0.549	0.85
150_L	189_P	0.549	0.85
284_L	288_Q	0.548	0.85
85_P	89_P	0.548	0.85
71_G	78_Q	0.546	0.84
162_T	205_H	0.546	0.84
233_A	363_V	0.545	0.84
123_I	369_L	0.545	0.84
40_L	43_Q	0.545	0.84
62_V	78_Q	0.542	0.84
107_L	119_P	0.542	0.84
75_R	258_V	0.541	0.84
99_A	103_L	0.541	0.84
23_S	26_I	0.539	0.84
156_I	325_I	0.538	0.84
42_W	46_P	0.538	0.84
91_I	168_L	0.538	0.84
95_V	129_A	0.538	0.84
185_R	189_P	0.537	0.83
173_T	366_D	0.537	0.83
13_S	20_G	0.537	0.83
17_V	199_T	0.536	0.83
165_A	324_R	0.534	0.83
15_P	134_I	0.534	0.83
97_P	136_A	0.531	0.83
73_V	105_V	0.530	0.83
22_A	134_I	0.529	0.83
279_S	286_E	0.528	0.82
66_T	110_G	0.528	0.82
146_E	150_L	0.527	0.82
93_A	96_P	0.524	0.82
111_L	370_S	0.523	0.82
148_T	181_P	0.523	0.82
296_F	301_Y	0.522	0.82
229_V	351_T	0.522	0.82
110_G	321_R	0.522	0.82
83_P	87_C	0.521	0.82
16_A	150_L	0.521	0.82
34_A	108_I	0.520	0.81
66_T	264_G	0.520	0.81
43_Q	47_G	0.518	0.81
233_A	237_G	0.518	0.81
203_F	207_H	0.518	0.81
181_P	200_T	0.518	0.81
304_L	330_F	0.518	0.81
255_K	259_L	0.518	0.81
18_A	22_A	0.516	0.81
39_N	43_Q	0.515	0.81
266_F	270_I	0.514	0.81
111_L	324_R	0.513	0.81
279_S	282_K	0.513	0.81
171_S	186_L	0.513	0.81
63_L	269_G	0.513	0.81
197_A	385_P	0.512	0.80
162_T	325_I	0.512	0.80
103_L	106_A	0.512	0.80
28_I	34_A	0.509	0.80
329_V	360_V	0.509	0.80
43_Q	342_H	0.509	0.80
291_V	349_A	0.508	0.80
155_T	366_D	0.507	0.80
83_P	122_P	0.507	0.80
117_L	326_F	0.507	0.80
325_I	329_V	0.505	0.80
28_I	158_A	0.505	0.80
346_V	349_A	0.504	0.79
66_T	78_Q	0.504	0.79
71_G	77_S	0.504	0.79
167_A	171_S	0.504	0.79
340_H	362_V	0.502	0.79
61_G	65_L	0.502	0.79
31_M	119_P	0.501	0.79
53_Q	56_P	0.501	0.79
67_G	261_L	0.501	0.79
245_P	249_A	0.500	0.79
325_I	369_L	0.500	0.79

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3nd0A	2	0.9785	100	0.159	Contact Map
4eneA	2	0.9928	100	0.178	Contact Map
3orgA	2	0.9139	100	0.25	Contact Map
1jcnA	6	0.2033	98.7	0.876	Contact Map
3usbA	4	0.1962	46.3	0.96	Contact Map
1ldfA	3	0.1962	24.7	0.965	Contact Map
4nefA	4	0.2153	20.8	0.966	Contact Map
2ksfA	1	0.2464	19.7	0.967	Contact Map
2nq2A	2	0.4474	19.1	0.967	Contact Map
4g1uA	2	0.4498	18.7	0.967	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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