GREMLIN Database
YQJD - Uncharacterized protein YqjD
UniProt: P64581 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12743
Length: 101 (96)
Sequences: 415 (250)
Seq/√Len: 25.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
75_Y81_W3.2371.00
79_N82_T2.6360.99
73_D77_R2.3630.98
83_G92_V2.2730.98
92_V98_L2.1540.97
24_V72_A2.1420.97
93_V98_L2.1120.97
35_E38_K2.0470.96
49_Q53_R2.0340.96
36_L65_T1.9220.94
66_R73_D1.9210.94
51_R64_Q1.8670.93
81_W84_V1.8500.93
10_L54_L1.7920.92
20_T23_E1.7420.90
70_A77_R1.7170.90
38_K42_K1.6990.89
62_A69_A1.6810.89
28_S36_L1.6410.87
18_S50_S1.5250.83
55_G98_L1.4860.82
36_L44_E1.4520.80
80_P100_R1.4110.78
43_A58_G1.4030.78
79_N92_V1.3710.76
8_E38_K1.3520.75
21_L58_G1.3410.74
86_I90_I1.3350.74
25_L68_A1.2750.70
13_E16_S1.2720.70
12_A85_G1.2690.70
84_V89_A1.2690.70
70_A79_N1.2690.70
34_E63_K1.2650.70
54_L101_R1.2590.69
36_L47_L1.2350.68
51_R55_G1.2320.68
73_D76_V1.2200.67
41_S45_Q1.1980.65
32_S36_L1.1800.64
90_I98_L1.1630.63
35_E92_V1.1610.63
7_T32_S1.1520.62
18_S43_A1.1480.62
24_V53_R1.1360.61
37_S84_V1.1330.61
73_D84_V1.1310.61
23_E42_K1.1260.61
72_A79_N1.1200.60
57_T60_A1.1020.59
41_S48_K1.0990.59
15_K69_A1.0650.56
18_S33_K1.0290.54
37_S40_R1.0250.53
73_D87_G0.9830.50
17_L37_S0.9610.49
71_R75_Y0.9500.48
39_I74_E0.9400.47
35_E65_T0.9390.47
31_K83_G0.9230.46
26_S42_K0.9210.46
7_T16_S0.9170.45
62_A66_R0.9150.45
86_I89_A0.9100.45
45_Q48_K0.9050.45
12_A15_K0.8930.44
26_S79_N0.8900.43
97_L101_R0.8620.41
22_E71_R0.8540.41
86_I93_V0.8520.41
65_T98_L0.8420.40
13_E64_Q0.8370.40
72_A87_G0.8200.38
24_V28_S0.8200.38
57_T66_R0.8020.37
40_R99_S0.7800.36
89_A94_L0.7770.36
50_S58_G0.7660.35
55_G59_D0.7630.35
35_E42_K0.7610.34
29_G40_R0.7590.34
32_S38_K0.7470.34
6_T94_L0.7460.33
13_E17_L0.7410.33
55_G70_A0.7260.32
20_T33_K0.7250.32
80_P88_A0.7230.32
66_R100_R0.6990.30
87_G99_S0.6980.30
32_S88_A0.6970.30
83_G87_G0.6950.30
43_A46_A0.6920.30
56_E67_V0.6790.29
14_L65_T0.6780.29
48_K56_E0.6750.29
44_E87_G0.6740.29
32_S75_Y0.6740.29
70_A73_D0.6620.28
6_T10_L0.6600.28
67_V86_I0.6550.28
87_G91_G0.6520.28
35_E63_K0.6500.28
28_S32_S0.6460.27
41_S90_I0.6430.27
68_A85_G0.6420.27
89_A96_V0.6410.27
49_Q67_V0.6250.26
27_S42_K0.6210.26
28_S31_K0.6190.26
15_K62_A0.6190.26
12_A34_E0.6160.26
19_D43_A0.6140.25
15_K90_I0.6110.25
20_T28_S0.6100.25
6_T98_L0.6050.25
56_E62_A0.6020.25
39_I84_V0.5950.24
52_Y99_S0.5860.24
38_K94_L0.5840.24
26_S85_G0.5830.24
93_V97_L0.5800.24
22_E51_R0.5800.24
18_S24_V0.5760.23
53_R100_R0.5750.23
73_D92_V0.5720.23
45_Q86_I0.5700.23
21_L80_P0.5650.23
23_E26_S0.5640.23
19_D71_R0.5500.22
53_R66_R0.5450.22
7_T24_V0.5370.21
29_G41_S0.5370.21
26_S56_E0.5360.21
30_E94_L0.5330.21
13_E29_G0.5330.21
55_G78_E0.5330.21
71_R82_T0.5320.21
52_Y70_A0.5270.21
14_L53_R0.5200.21
92_V100_R0.5190.21
79_N99_S0.5190.21
23_E76_V0.5070.20
11_R51_R0.5020.20
14_L50_S0.5000.20
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4dndA 1 0.7327 70.8 0.879 Contact Map
4j2cA 1 0.8119 61.2 0.886 Contact Map
2qywA 1 0.6139 39.4 0.9 Contact Map
2f9yA 2 0.8416 25.9 0.909 Contact Map
4aurA 1 1 24.5 0.91 Contact Map
2wvqA 2 0.6832 23.2 0.911 Contact Map
1vcsA 1 0.7129 21.4 0.913 Contact Map
4kboA 1 0.7129 19.4 0.914 Contact Map
2lomA 1 0.4752 15 0.919 Contact Map
2f9iA 2 0.8515 14 0.92 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0053 seconds.