GREMLIN Database
CLPB - Chaperone protein ClpB
UniProt: P63284 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG10157
Length: 857 (846)
Sequences: 3836 (1821)
Seq/√Len: 62.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
170_E174_Q6.8531.00
776_Q800_L5.3051.00
167_D236_R5.1501.00
796_S847_E5.1251.00
419_I448_L4.6841.00
772_A801_K4.6241.00
165_T238_L4.4031.00
508_E512_Q4.4011.00
490_R502_Q4.0801.00
412_L455_Y4.0741.00
243_G298_M3.8511.00
26_N68_L3.7731.00
716_M757_I3.6181.00
567_H574_N3.6131.00
768_E805_E3.5541.00
423_K452_E3.5501.00
832_Q837_E3.5201.00
565_E568_H3.5111.00
426_Q445_N3.4631.00
798_E847_E3.4601.00
561_R564_Q3.4391.00
496_A500_E3.3511.00
166_I171_R3.2581.00
346_T374_A3.2531.00
780_K783_Y3.1061.00
479_L506_I3.0721.00
159_Q162_K2.9211.00
497_R500_E2.8931.00
264_N268_K2.8481.00
230_E233_K2.8331.00
267_A307_E2.8221.00
471_G512_Q2.8091.00
486_I506_I2.7671.00
482_A506_I2.7411.00
446_E450_D2.7251.00
343_V374_A2.6821.00
36_S65_N2.6721.00
90_V114_A2.5931.00
602_L757_I2.5901.00
500_E505_K2.5721.00
505_K508_E2.5151.00
50_L55_I2.4951.00
488_Q492_V2.4071.00
427_Q430_M2.3921.00
475_I513_L2.3921.00
353_L356_R2.3651.00
27_Q74_V2.3291.00
478_E505_K2.3091.00
693_V714_V2.2711.00
162_K170_E2.2571.00
463_K467_A2.2551.00
567_H577_V2.2411.00
479_L513_L2.2381.00
582_N831_Q2.2361.00
602_L679_V2.2311.00
720_L745_V2.1911.00
408_K416_D2.1871.00
796_S845_R2.1841.00
482_A501_L2.1581.00
510_E514_E2.1521.00
690_L693_V2.1311.00
485_A497_R2.1261.00
321_Q658_E2.1081.00
63_D128_A2.0901.00
481_Q485_A2.0801.00
791_Y844_I2.0751.00
339_A669_R2.0691.00
132_T135_N2.0591.00
514_E518_Q2.0581.00
426_Q441_L2.0481.00
434_D437_S2.0321.00
782_L821_I2.0161.00
402_R406_D2.0141.00
343_V378_H2.0141.00
337_F669_R2.0141.00
794_H845_R2.0131.00
644_S647_V2.0021.00
483_K510_E2.0001.00
459_E463_K1.9991.00
52_S142_Q1.9911.00
577_V614_L1.9901.00
393_L540_L1.9791.00
563_E585_R1.9781.00
425_E440_R1.9731.00
250_K254_E1.9641.00
167_D170_E1.9581.00
477_A481_Q1.9361.00
587_S592_A1.9251.00
600_S694_L1.9251.00
482_A505_K1.9241.00
234_G272_N1.9241.00
563_E578_D1.9131.00
745_V754_I1.9081.00
640_K685_D1.8921.00
203_V280_L1.8871.00
416_D459_E1.8761.00
641_H650_P1.8711.00
138_Q142_Q1.8581.00
439_K443_M1.8431.00
85_Q89_R1.8431.00
173_E236_R1.8421.00
839_V842_K1.8401.00
562_M621_F1.8401.00
342_S345_D1.8361.00
372_A533_D1.8331.00
453_R456_S1.8231.00
34_L87_L1.8221.00
10_F111_F1.8221.00
569_R613_E1.8191.00
394_I536_I1.8121.00
742_L812_Y1.8061.00
453_R457_E1.8031.00
430_M445_N1.7841.00
641_H644_S1.7831.00
422_L444_L1.7831.00
724_L744_V1.7781.00
474_T478_E1.7751.00
478_E512_Q1.7721.00
280_L323_I1.7681.00
242_M245_L1.7671.00
838_L844_I1.7661.00
343_V375_T1.7540.99
794_H843_V1.7430.99
223_I237_V1.7370.99
767_G770_H1.7330.99
825_I846_L1.7310.99
39_L64_I1.7270.99
104_N150_N1.7080.99
511_K515_A1.7030.99
792_E843_V1.6990.99
496_A499_S1.6960.99
226_G233_K1.6940.99
151_D157_Q1.6820.99
97_L133_T1.6800.99
482_A509_L1.6790.99
511_K514_E1.6780.99
24_H69_N1.6720.99
40_N61_R1.6690.99
575_E738_K1.6650.99
359_L362_H1.6620.99
475_I509_L1.6620.99
514_E517_T1.6580.99
779_L795_I1.6540.99
83_P87_L1.6460.99
90_V115_A1.6340.99
474_T477_A1.6280.99
190_T336_V1.6270.99
284_V329_L1.6220.99
67_A125_I1.6170.99
30_E84_S1.6170.99
829_L844_I1.6160.99
553_E561_R1.6070.99
418_R447_E1.6070.99
647_V689_I1.5960.99
482_A486_I1.5920.99
411_E454_Q1.5890.99
638_M642_S1.5880.99
408_K459_E1.5860.99
720_L744_V1.5790.99
775_A804_S1.5750.99
55_I60_L1.5740.99
449_S453_R1.5730.99
41_Q44_G1.5730.99
177_L221_Q1.5720.99
569_R620_N1.5700.99
123_A127_K1.5630.99
370_I394_I1.5510.99
133_T137_T1.5490.99
264_N267_A1.5480.99
102_G148_S1.5450.99
742_L762_V1.5440.99
666_V709_F1.5370.99
698_R706_T1.5330.99
802_L848_V1.5310.99
222_R417_R1.5290.99
9_K12_L1.5280.99
693_V699_L1.5260.99
628_A669_R1.5240.99
65_N69_N1.5170.98
569_R626_D1.5120.98
36_S64_I1.5070.98
776_Q797_D1.5060.98
478_E481_Q1.5000.98
48_P159_Q1.4990.98
160_A261_G1.4990.98
63_D66_Q1.4940.98
742_L745_V1.4900.98
789_R840_P1.4880.98
638_M688_N1.4870.98
516_A520_E1.4800.98
97_L100_K1.4780.98
280_L312_G1.4730.98
482_A485_A1.4710.98
807_G817_L1.4640.98
13_A38_L1.4600.98
171_R176_K1.4580.98
107_S149_V1.4570.98
720_L748_N1.4540.98
723_D744_V1.4490.98
541_A548_V1.4460.98
31_P87_L1.4420.98
499_S502_Q1.4320.98
734_Y737_M1.4280.98
778_Q781_R1.4260.98
637_F661_Y1.4250.98
515_A519_L1.4220.98
153_G156_D1.4210.98
124_D128_A1.4200.98
231_G406_D1.4180.98
450_D454_Q1.4170.98
508_E511_K1.4140.98
144_R149_V1.4140.98
26_N71_L1.4130.98
561_R565_E1.4130.98
364_Q530_K1.4080.98
467_A471_G1.3990.97
736_H740_L1.3980.97
24_H73_Q1.3970.97
36_S61_R1.3960.97
803_L820_A1.3940.97
782_L826_E1.3840.97
733_D736_H1.3830.97
415_L451_K1.3810.97
97_L114_A1.3770.97
32_L67_A1.3770.97
630_V666_V1.3720.97
435_E439_K1.3720.97
321_Q657_E1.3710.97
516_A519_L1.3670.97
569_R617_A1.3630.97
848_V851_D1.3610.97
582_N827_N1.3610.97
470_S474_T1.3600.97
131_A136_I1.3580.97
723_D727_E1.3580.97
36_S40_N1.3550.97
615_C715_I1.3540.97
602_L745_V1.3500.97
802_L806_N1.3490.97
806_N820_A1.3420.97
432_E437_S1.3400.97
100_K137_T1.3350.97
744_V747_H1.3350.97
632_I646_L1.3330.97
820_A824_Q1.3320.96
725_I737_M1.3320.96
471_G516_A1.3310.96
437_S440_R1.3290.96
207_E316_L1.3280.96
242_M283_M1.3270.96
795_I799_A1.3210.96
177_L180_V1.3180.96
50_L60_L1.3180.96
168_L239_A1.3170.96
571_I777_I1.3160.96
801_K805_E1.3110.96
528_R532_T1.3080.96
638_M685_D1.3010.96
594_P785_R1.2940.96
67_A121_T1.2900.96
13_A41_Q1.2890.96
227_E417_R1.2890.96
20_L24_H1.2860.96
479_L509_L1.2790.96
630_V672_S1.2790.96
469_L527_L1.2780.96
96_K99_Q1.2750.95
423_K448_L1.2750.95
775_A800_L1.2750.95
245_L262_V1.2730.95
107_S154_A1.2720.95
18_Q29_I1.2660.95
452_E456_S1.2630.95
242_M246_V1.2590.95
773_S776_Q1.2580.95
6_L10_F1.2550.95
791_Y838_L1.2550.95
764_H770_H1.2540.95
283_M296_G1.2530.95
565_E617_A1.2510.95
798_E801_K1.2490.95
348_A421_Q1.2480.95
24_H68_L1.2420.95
57_A61_R1.2420.95
739_E743_G1.2420.95
637_F645_R1.2410.95
795_I800_L1.2380.95
93_L96_K1.2350.95
575_E764_H1.2330.95
20_L37_A1.2310.95
738_K762_V1.2290.94
167_D238_L1.2290.94
56_N59_Q1.2240.94
494_D497_R1.2240.94
499_S503_Y1.2230.94
439_K790_G1.2220.94
480_E484_I1.2200.94
419_I451_K1.2180.94
790_G840_P1.2160.94
592_A598_I1.2160.94
44_G47_S1.2140.94
484_I488_Q1.2090.94
166_I239_A1.2090.94
31_P90_V1.2080.94
455_Y459_E1.2040.94
557_E561_R1.2030.94
564_Q567_H1.1990.94
585_R834_L1.1980.94
617_A620_N1.1970.94
117_E133_T1.1950.94
738_K742_L1.1930.94
362_H473_Q1.1900.93
372_A375_T1.1900.93
498_M502_Q1.1900.93
768_E801_K1.1900.93
416_D455_Y1.1870.93
124_D127_K1.1850.93
350_L373_A1.1830.93
735_A739_E1.1790.93
566_L617_A1.1750.93
14_L91_L1.1700.93
193_V336_V1.1600.93
23_G96_K1.1540.92
772_A797_D1.1530.92
563_E581_S1.1520.92
366_T532_T1.1510.92
728_R737_M1.1470.92
423_K426_Q1.1440.92
145_G149_V1.1420.92
560_L834_L1.1400.92
779_L783_Y1.1390.92
775_A821_I1.1370.92
565_E621_F1.1370.92
49_L143_M1.1350.92
560_L831_Q1.1340.92
784_K787_E1.1320.92
438_K441_L1.1320.92
160_A265_D1.1320.92
419_I455_Y1.1310.92
199_K392_D1.1300.92
242_M266_L1.1290.92
826_E830_A1.1280.92
263_L302_A1.1280.92
486_I502_Q1.1260.91
450_D453_R1.1260.91
67_A70_R1.1240.91
121_T124_D1.1220.91
134_A138_Q1.1190.91
185_E414_R1.1180.91
787_E792_E1.1170.91
745_V760_V1.1160.91
442_D445_N1.1150.91
266_L273_V1.1130.91
585_R827_N1.1100.91
93_L117_E1.1090.91
135_N138_Q1.1060.91
32_L71_L1.0990.90
495_L504_G1.0980.90
221_Q225_N1.0980.90
137_T140_I1.0980.90
448_L452_E1.0960.90
442_D446_E1.0950.90
13_A34_L1.0910.90
603_F715_I1.0890.90
53_A131_A1.0880.90
464_A467_A1.0880.90
562_M581_S1.0830.90
45_S107_S1.0810.90
429_L432_E1.0810.90
381_I540_L1.0800.90
578_D582_N1.0770.90
461_E465_E1.0740.89
222_R227_E1.0730.89
779_L825_I1.0710.89
36_S68_L1.0630.89
8_N152_Q1.0590.89
821_I825_I1.0560.89
98_A106_I1.0550.89
18_Q81_V1.0530.88
806_N824_Q1.0520.88
118_S123_A1.0520.88
208_P385_Q1.0510.88
35_M122_L1.0510.88
192_Q400_S1.0490.88
831_Q835_S1.0480.88
796_S799_A1.0480.88
105_F152_Q1.0480.88
6_L91_L1.0460.88
604_L718_S1.0450.88
469_L476_K1.0430.88
197_R591_L1.0410.88
290_D321_Q1.0400.88
783_Y793_I1.0390.88
785_R826_E1.0390.88
29_I83_P1.0380.88
798_E848_V1.0340.88
559_L585_R1.0300.87
832_Q835_S1.0300.87
126_L129_A1.0300.87
426_Q444_L1.0290.87
776_Q783_Y1.0250.87
377_S389_K1.0250.87
368_P533_D1.0200.87
509_L517_T1.0150.87
486_I501_L1.0130.86
517_T521_G1.0110.86
227_E413_D1.0100.86
568_H780_K1.0090.86
30_E86_D1.0080.86
510_E517_T1.0080.86
594_P788_E1.0080.86
734_Y764_H1.0050.86
603_F763_F1.0040.86
676_L693_V1.0030.86
16_D37_A1.0010.86
63_D129_A0.9990.86
468_S472_T0.9970.86
471_G475_I0.9950.85
772_A800_L0.9950.85
807_G820_A0.9940.85
8_N153_G0.9930.85
38_L108_S0.9930.85
269_Q273_V0.9900.85
685_D688_N0.9900.85
501_L505_K0.9830.85
7_T107_S0.9830.85
101_R110_L0.9830.85
60_L125_I0.9830.85
457_E461_E0.9820.85
205_I335_K0.9810.85
485_A488_Q0.9810.85
438_K442_D0.9800.85
97_L137_T0.9790.84
366_T530_K0.9780.84
740_L744_V0.9780.84
679_V716_M0.9760.84
120_G123_A0.9760.84
221_Q224_I0.9750.84
540_L548_V0.9720.84
249_A262_V0.9720.84
246_V298_M0.9720.84
27_Q77_T0.9710.84
585_R831_Q0.9710.84
795_I846_L0.9690.84
405_I469_L0.9670.84
204_L338_V0.9660.84
12_L16_D0.9660.84
140_I147_E0.9650.84
46_V136_I0.9640.84
94_C111_F0.9560.83
643_V686_V0.9560.83
242_M282_T0.9560.83
418_R421_Q0.9530.83
252_R290_D0.9530.83
736_H739_E0.9530.83
46_V112_V0.9530.83
778_Q818_K0.9510.83
528_R535_E0.9510.83
32_L86_D0.9510.83
6_L111_F0.9510.83
771_I804_S0.9500.83
513_L517_T0.9500.83
424_L427_Q0.9490.83
410_E415_L0.9490.83
162_K165_T0.9480.83
317_D321_Q0.9470.82
289_A293_M0.9470.82
679_V757_I0.9430.82
316_L703_Q0.9430.82
797_D801_K0.9430.82
595_N627_E0.9420.82
454_Q457_E0.9390.82
802_L820_A0.9390.82
779_L821_I0.9380.82
170_E173_E0.9360.82
461_E524_M0.9320.81
479_L482_A0.9310.81
130_G136_I0.9310.81
39_L60_L0.9310.81
116_L136_I0.9280.81
20_L23_G0.9280.81
16_D19_S0.9280.81
6_L95_D0.9270.81
177_L570_V0.9260.81
28_F82_Q0.9260.81
320_R649_A0.9240.81
500_E504_G0.9240.81
776_Q795_I0.9230.81
412_L526_L0.9220.81
458_L526_L0.9200.81
288_K321_Q0.9190.81
101_R137_T0.9180.80
106_I111_F0.9160.80
28_F84_S0.9120.80
66_Q70_R0.9110.80
130_G133_T0.9070.80
497_R505_K0.9050.80
169_T238_L0.9040.79
515_A518_Q0.9010.79
639_E650_P0.9010.79
645_R700_T0.8990.79
772_A776_Q0.8980.79
415_L455_Y0.8980.79
67_A124_D0.8950.79
475_I512_Q0.8920.79
61_R65_N0.8920.79
139_A142_Q0.8910.78
280_L311_V0.8900.78
490_R493_G0.8880.78
236_R272_N0.8860.78
419_I452_E0.8860.78
679_V745_V0.8860.78
423_K427_Q0.8860.78
509_L512_Q0.8840.78
104_N148_S0.8810.78
8_N12_L0.8800.78
580_V603_F0.8780.77
35_M112_V0.8750.77
443_M446_E0.8750.77
566_L570_V0.8720.77
632_I644_S0.8710.77
400_S404_Q0.8690.77
498_M507_P0.8690.77
443_M676_L0.8690.77
437_S441_L0.8670.77
643_V689_I0.8660.76
132_T136_I0.8660.76
657_E676_L0.8620.76
355_E483_K0.8620.76
666_V712_T0.8610.76
91_L106_I0.8610.76
471_G474_T0.8600.76
495_L502_Q0.8590.76
136_I140_I0.8560.76
495_L499_S0.8560.76
135_N139_A0.8550.76
483_K506_I0.8550.76
197_R357_Y0.8500.75
143_M149_V0.8480.75
350_L390_A0.8480.75
203_V323_I0.8470.75
476_K517_T0.8470.75
189_R192_Q0.8450.75
838_L842_K0.8450.75
240_L262_V0.8440.75
336_V684_P0.8430.74
650_P657_E0.8430.74
416_D420_I0.8420.74
38_L44_G0.8410.74
378_H385_Q0.8390.74
783_Y787_E0.8370.74
172_A197_R0.8360.74
772_A804_S0.8340.74
8_N11_Q0.8340.74
10_F108_S0.8340.74
26_N33_H0.8340.74
208_P327_A0.8330.74
32_L121_T0.8290.73
10_F106_I0.8280.73
377_S386_L0.8280.73
143_M147_E0.8270.73
249_A322_Y0.8260.73
169_T172_A0.8260.73
289_A322_Y0.8250.73
293_M298_M0.8250.73
450_D483_K0.8240.73
640_K647_V0.8240.73
506_I513_L0.8210.73
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386_L390_A0.5350.42
453_R460_E0.5350.42
722_S725_I0.5340.41
473_Q476_K0.5340.41
472_T516_A0.5340.41
425_E428_A0.5330.41
156_D246_V0.5330.41
794_H797_D0.5330.41
353_L703_Q0.5330.41
35_M564_Q0.5330.41
15_A18_Q0.5330.41
443_M447_E0.5330.41
818_K827_N0.5330.41
283_M292_A0.5330.41
163_K249_A0.5320.41
465_E476_K0.5310.41
172_A777_I0.5310.41
103_D110_L0.5300.41
472_T519_L0.5300.41
227_E668_R0.5290.41
642_S685_D0.5280.41
347_I584_I0.5280.41
650_P653_Y0.5280.41
74_V77_T0.5280.41
553_E557_E0.5270.41
674_I713_V0.5260.41
479_L507_P0.5260.41
586_R827_N0.5260.41
598_I623_F0.5250.40
199_K700_T0.5250.40
429_L448_L0.5250.40
13_A44_G0.5250.40
23_G65_N0.5240.40
799_A847_E0.5240.40
638_M689_I0.5240.40
663_T707_V0.5240.40
163_K236_R0.5240.40
770_H773_S0.5240.40
145_G159_Q0.5230.40
666_V672_S0.5230.40
539_V620_N0.5230.40
491_R503_Y0.5230.40
107_S145_G0.5220.40
754_I760_V0.5220.40
6_L14_L0.5220.40
275_L308_L0.5210.40
489_A501_L0.5210.40
511_K837_E0.5210.40
638_M643_V0.5210.40
349_I647_V0.5210.40
146_G266_L0.5200.40
534_A777_I0.5200.40
273_V845_R0.5200.40
461_E526_L0.5200.40
412_L459_E0.5180.40
585_R628_A0.5180.40
103_D109_E0.5180.40
454_Q767_G0.5170.40
68_L149_V0.5170.40
583_A598_I0.5160.39
656_Y702_G0.5150.39
10_F14_L0.5150.39
19_S23_G0.5140.39
45_S676_L0.5140.39
585_R820_A0.5140.39
494_D504_G0.5140.39
788_E830_A0.5140.39
287_G318_E0.5130.39
552_M829_L0.5130.39
118_S128_A0.5130.39
62_T735_A0.5130.39
536_I851_D0.5120.39
16_D40_N0.5120.39
90_V118_S0.5120.39
738_K741_V0.5120.39
550_R555_E0.5120.39
791_Y840_P0.5120.39
429_L441_L0.5120.39
582_N823_Q0.5110.39
86_D128_A0.5110.39
298_M834_L0.5110.39
440_R444_L0.5110.39
629_M674_I0.5110.39
502_Q506_I0.5110.39
243_G354_K0.5100.39
691_L700_T0.5100.39
613_E617_A0.5100.39
461_E525_R0.5100.39
287_G297_N0.5100.39
591_L826_E0.5090.39
729_F737_M0.5090.39
154_A158_R0.5090.39
609_V638_M0.5090.39
481_Q484_I0.5090.39
243_G275_L0.5090.39
400_S403_M0.5090.39
786_L795_I0.5090.39
237_V604_L0.5080.39
587_S596_R0.5080.39
316_L705_R0.5080.39
553_E830_A0.5070.38
347_I847_E0.5070.38
399_S589_A0.5060.38
582_N629_M0.5060.38
126_L131_A0.5050.38
52_S133_T0.5040.38
560_L835_S0.5040.38
195_Q231_G0.5040.38
109_E140_I0.5040.38
769_Q772_A0.5030.38
593_D818_K0.5030.38
392_D688_N0.5030.38
808_Y816_P0.5030.38
91_L779_L0.5020.38
137_T147_E0.5020.38
192_Q778_Q0.5010.38
35_M613_E0.5010.38
208_P623_F0.5010.38
167_D708_D0.5000.38
606_P720_L0.5000.38
225_N442_D0.5000.38
512_Q516_A0.5000.38
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1qvrA 3 0.9335 100 0.438 Contact Map
4d2uA 3 0.9195 100 0.439 Contact Map
1r6bX 1 0.8075 100 0.484 Contact Map
3pxiA 3 0.8308 100 0.506 Contact Map
4ciuA 1 0.7655 100 0.572 Contact Map
3pxgA 3 0.5146 100 0.735 Contact Map
3vkgA 2 0.7993 100 0.771 Contact Map
4hseA 1 0.4306 100 0.775 Contact Map
4lj9A 1 0.3851 100 0.824 Contact Map
4akgA 2 0.7993 100 0.831 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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