FLAV - ECOLI - GREMLIN Contacts

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FLAV - Flavodoxin-1

UniProt:	P61949	Sequences: MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKWVKQISEELHLDEILNA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10318
Length:	176 (138)
Sequences:	2927 (1971)
Seq/√Len:	167.8

ECOLI - FLAV FLAW MIOC CYSJ YQCA
BACSU - FLAV FLAW CYSJ CYPD CYPE

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
87_G	102_L	3.959	1.00
82_L	115_T	3.406	1.00
106_R	116_I	3.273	1.00
110_E	116_I	3.181	1.00
103_G	122_T	2.915	1.00
53_G	86_F	2.791	1.00
108_I	112_R	2.691	1.00
108_I	111_P	2.415	1.00
100_D	104_T	2.405	1.00
11_D	64_C	2.289	1.00
49_I	82_L	2.283	1.00
74_E	108_I	2.260	1.00
6_I	23_Q	2.132	1.00
23_Q	33_V	2.083	1.00
4_T	26_L	2.073	1.00
85_L	102_L	2.019	1.00
7_F	36_I	1.914	1.00
36_I	69_F	1.907	1.00
83_V	106_R	1.905	1.00
15_T	53_G	1.868	1.00
32_D	47_Y	1.831	1.00
6_I	31_A	1.830	1.00
83_V	116_I	1.762	1.00
100_D	103_G	1.731	1.00
35_D	38_K	1.636	1.00
39_S	47_Y	1.635	1.00
16_E	20_K	1.625	1.00
70_F	105_I	1.622	1.00
40_S	43_D	1.620	1.00
83_V	114_A	1.570	1.00
58_Y	61_E	1.551	1.00
54_I	101_A	1.528	1.00
9_G	54_I	1.467	1.00
109_I	114_A	1.429	1.00
106_R	110_E	1.425	1.00
9_G	66_W	1.419	1.00
18_I	88_C	1.418	1.00
59_Y	97_Y	1.414	1.00
106_R	120_W	1.410	1.00
86_F	123_A	1.392	1.00
131_K	134_A	1.357	1.00
109_I	116_I	1.350	1.00
5_G	47_Y	1.350	1.00
103_G	120_W	1.313	1.00
61_E	104_T	1.310	1.00
23_Q	27_G	1.293	1.00
17_N	21_M	1.268	1.00
52_L	109_I	1.254	1.00
83_V	110_E	1.251	1.00
7_F	39_S	1.224	1.00
54_I	105_I	1.221	1.00
50_L	81_K	1.207	1.00
138_H	142_L	1.202	1.00
52_L	105_I	1.191	1.00
10_S	15_T	1.172	1.00
43_D	46_A	1.145	1.00
62_A	101_A	1.119	1.00
51_L	84_A	1.114	1.00
9_G	65_D	1.114	1.00
139_F	142_L	1.109	1.00
127_F	133_L	1.107	1.00
34_H	39_S	1.097	1.00
9_G	63_Q	1.075	1.00
26_L	31_A	1.057	0.99
99_C	102_L	1.055	0.99
36_I	66_W	1.023	0.99
70_F	101_A	1.018	0.99
20_K	33_V	1.013	0.99
107_D	111_P	1.011	0.99
37_A	65_D	0.988	0.99
49_I	117_V	0.974	0.99
64_C	67_D	0.954	0.99
62_A	104_T	0.948	0.99
138_H	143_A	0.926	0.99
89_G	99_C	0.922	0.99
80_G	115_T	0.919	0.99
5_G	34_H	0.905	0.98
107_D	110_E	0.902	0.98
59_Y	96_E	0.881	0.98
4_T	51_L	0.874	0.98
70_F	104_T	0.874	0.98
106_R	119_H	0.869	0.98
133_L	137_D	0.867	0.98
99_C	143_A	0.864	0.98
17_N	20_K	0.852	0.98
4_T	49_I	0.846	0.97
127_F	131_K	0.845	0.97
22_I	53_G	0.831	0.97
102_L	143_A	0.818	0.97
87_G	99_C	0.817	0.97
55_P	63_Q	0.816	0.97
23_Q	31_A	0.816	0.97
137_D	141_G	0.801	0.96
78_F	114_A	0.799	0.96
25_Q	29_D	0.796	0.96
39_S	69_F	0.793	0.96
19_A	33_V	0.789	0.96
84_A	118_G	0.789	0.96
14_N	18_I	0.786	0.96
51_L	139_F	0.782	0.96
3_I	30_V	0.778	0.96
6_I	33_V	0.773	0.96
123_A	127_F	0.767	0.95
84_A	117_V	0.752	0.95
22_I	87_G	0.747	0.95
85_L	116_I	0.747	0.95
6_I	48_D	0.732	0.94
116_I	119_H	0.726	0.94
85_L	106_R	0.723	0.94
7_F	47_Y	0.719	0.94
69_F	105_I	0.715	0.93
130_S	133_L	0.712	0.93
32_D	43_D	0.711	0.93
89_G	98_F	0.708	0.93
41_K	72_T	0.707	0.93
67_D	71_P	0.701	0.93
118_G	138_H	0.695	0.92
34_H	38_K	0.692	0.92
83_V	109_I	0.690	0.92
16_E	64_C	0.689	0.92
102_L	120_W	0.684	0.92
6_I	22_I	0.677	0.91
24_K	29_D	0.672	0.91
9_G	88_C	0.671	0.91
48_D	80_G	0.669	0.91
22_I	51_L	0.662	0.91
54_I	58_Y	0.661	0.90
70_F	74_E	0.658	0.90
18_I	53_G	0.656	0.90
39_S	43_D	0.652	0.90
15_T	88_C	0.652	0.90
55_P	124_G	0.651	0.90
78_F	112_R	0.651	0.90
76_I	112_R	0.649	0.90
10_S	13_G	0.648	0.90
131_K	135_D	0.643	0.89
27_G	30_V	0.642	0.89
11_D	63_Q	0.640	0.89
44_L	50_L	0.640	0.89
52_L	85_L	0.639	0.89
88_C	94_Y	0.636	0.89
7_F	34_H	0.634	0.89
13_G	69_F	0.634	0.89
36_I	105_I	0.633	0.88
31_A	34_H	0.631	0.88
7_F	52_L	0.626	0.88
140_V	143_A	0.625	0.88
9_G	101_A	0.622	0.88
57_W	101_A	0.621	0.88
10_S	63_Q	0.621	0.88
54_I	102_L	0.620	0.87
106_R	134_A	0.616	0.87
44_L	99_C	0.610	0.87
25_Q	135_D	0.606	0.86
13_G	16_E	0.601	0.86
45_E	76_I	0.596	0.85
121_P	130_S	0.595	0.85
137_D	140_V	0.594	0.85
73_L	108_I	0.594	0.85
54_I	62_A	0.584	0.84
5_G	32_D	0.584	0.84
5_G	50_L	0.583	0.84
5_G	39_S	0.581	0.84
139_F	143_A	0.580	0.84
52_L	63_Q	0.579	0.84
21_M	24_K	0.579	0.84
58_Y	100_D	0.577	0.83
25_Q	28_K	0.576	0.83
41_K	69_F	0.570	0.83
27_G	32_D	0.566	0.82
69_F	72_T	0.563	0.82
34_H	43_D	0.562	0.82
87_G	123_A	0.555	0.81
60_G	63_Q	0.554	0.81
104_T	107_D	0.552	0.81
18_I	21_M	0.552	0.81
73_L	109_I	0.552	0.81
37_A	63_Q	0.547	0.80
74_E	107_D	0.547	0.80
54_I	65_D	0.547	0.80
29_D	118_G	0.546	0.80
96_E	128_E	0.546	0.80
8_F	20_K	0.545	0.80
19_A	86_F	0.544	0.80
86_F	131_K	0.540	0.79
88_C	124_G	0.536	0.79
8_F	65_D	0.535	0.79
16_E	57_W	0.527	0.78
57_W	65_D	0.527	0.78
70_F	108_I	0.522	0.77
10_S	65_D	0.521	0.77
13_G	58_Y	0.520	0.77
55_P	101_A	0.519	0.77
42_E	47_Y	0.518	0.76
97_Y	100_D	0.518	0.76
47_Y	50_L	0.514	0.76
56_T	102_L	0.513	0.76
10_S	124_G	0.511	0.75
48_D	81_K	0.511	0.75
128_E	132_G	0.510	0.75
74_E	112_R	0.510	0.75
12_T	16_E	0.507	0.75
40_S	72_T	0.505	0.75
26_L	140_V	0.503	0.74
107_D	134_A	0.502	0.74
46_A	77_D	0.501	0.74
119_H	138_H	0.500	0.74

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1tllA	2	0.9432	100	0.359	Contact Map
1ag9A	2	0.9943	100	0.376	Contact Map
2bpoA	1	0.983	100	0.381	Contact Map
3qe2A	1	0.9716	100	0.389	Contact Map
2wc1A	1	0.983	100	0.404	Contact Map
2bmvA	1	0.9261	100	0.405	Contact Map
1yobA	1	0.9659	100	0.406	Contact Map
2fcrA	1	0.9489	100	0.434	Contact Map
3hr4A	2	0.9034	100	0.435	Contact Map
1oboA	1	0.9545	100	0.444	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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