MSBA - ECOLI - GREMLIN Contacts

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MSBA - Lipid A export ATP-binding/permease protein MsbA

UniProt:	P60752	Sequences: MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQFGQ	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG10613
Length:	582 (558)
Sequences:	52355 (37099)
Seq/√Len:	1570.5

ECOLI - MSBA CYDD MDLA MDLB CYDC YOJI YDDA
BACSU - YHEH YFIC BMRA YKNV SUNT YGAD YKNU YWJA YHEI YFIB CYDD CYDC YVRA OPUAA
HALSA - Q9HSQ7 Q9HMX3 BTUDA Q9HMW0
SULSO - Q97UJ9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
460_M	470_L	4.632	1.00
370_K	547_E	4.500	1.00
346_N	361_N	4.452	1.00
367_P	370_K	4.334	1.00
343_E	365_K	4.313	1.00
431_D	435_N	3.970	1.00
345_R	399_E	3.935	1.00
547_E	559_R	3.875	1.00
562_H	572_Y	3.844	1.00
434_A	447_R	3.803	1.00
455_R	460_M	3.718	1.00
345_R	401_L	3.368	1.00
460_M	464_N	3.368	1.00
399_E	406_D	3.358	1.00
341_D	365_K	3.279	1.00
344_F	347_V	3.166	1.00
360_R	555_V	3.090	1.00
434_A	471_D	3.021	1.00
454_A	470_L	2.980	1.00
434_A	438_A	2.978	1.00
446_S	449_Q	2.945	1.00
386_A	535_I	2.945	1.00
569_R	573_A	2.901	1.00
447_R	451_E	2.805	1.00
348_T	361_N	2.789	1.00
386_A	503_I	2.764	1.00
357_P	360_R	2.696	1.00
418_Q	500_P	2.585	1.00
437_I	454_A	2.558	1.00
558_E	568_H	2.473	1.00
343_E	401_L	2.462	1.00
420_A	499_S	2.462	1.00
366_I	372_V	2.441	1.00
452_E	456_M	2.419	1.00
391_R	394_D	2.402	1.00
341_D	367_P	2.400	1.00
451_E	460_M	2.388	1.00
498_D	530_R	2.366	1.00
441_R	449_Q	2.356	1.00
558_E	570_G	2.353	1.00
53_D	282_G	2.337	1.00
468_N	472_T	2.325	1.00
350_T	357_P	2.293	1.00
158_I	162_Y	2.290	1.00
549_V	559_R	2.277	1.00
411_T	414_S	2.275	1.00
561_T	564_D	2.255	1.00
364_L	549_V	2.246	1.00
558_E	569_R	2.237	1.00
434_A	450_I	2.223	1.00
371_T	545_A	2.182	1.00
451_E	455_R	2.168	1.00
348_T	357_P	2.164	1.00
437_I	450_I	2.151	1.00
53_D	280_T	2.134	1.00
341_D	368_A	2.130	1.00
344_F	364_L	2.115	1.00
459_A	462_F	2.108	1.00
348_T	397_E	2.096	1.00
340_G	403_D	2.011	1.00
552_E	571_V	1.979	1.00
516_E	538_R	1.978	1.00
19_T	103_R	1.969	1.00
524_D	544_K	1.961	1.00
366_I	533_L	1.960	1.00
394_D	408_R	1.942	1.00
346_N	363_N	1.925	1.00
449_Q	498_D	1.922	1.00
319_F	323_D	1.902	1.00
23_F	99_T	1.897	1.00
350_T	396_D	1.889	1.00
451_E	464_N	1.884	1.00
372_V	547_E	1.853	1.00
560_G	564_D	1.823	1.00
164_S	273_P	1.810	1.00
21_A	24_K	1.802	1.00
452_E	455_R	1.794	1.00
438_A	447_R	1.792	1.00
453_A	457_A	1.788	1.00
438_A	450_I	1.785	1.00
199_T	236_R	1.776	1.00
65_V	69_L	1.766	1.00
107_H	326_Q	1.748	1.00
372_V	549_V	1.732	1.00
511_L	519_I	1.711	1.00
549_V	556_I	1.697	1.00
385_I	551_V	1.688	1.00
131_D	317_T	1.670	1.00
373_A	545_A	1.659	1.00
342_V	533_L	1.645	1.00
447_R	471_D	1.639	1.00
69_L	73_G	1.634	1.00
454_A	463_I	1.633	1.00
339_T	403_D	1.625	1.00
557_V	571_V	1.624	1.00
437_I	496_L	1.621	1.00
458_Y	518_A	1.599	1.00
406_D	409_E	1.591	1.00
517_R	521_A	1.581	1.00
222_G	225_V	1.580	1.00
558_E	573_A	1.577	1.00
456_M	525_E	1.577	1.00
552_E	557_V	1.573	1.00
370_K	546_D	1.573	1.00
194_K	316_Q	1.568	1.00
475_G	480_L	1.566	1.00
451_E	470_L	1.564	1.00
371_T	534_V	1.563	1.00
374_L	385_I	1.562	1.00
566_L	576_H	1.559	1.00
359_L	362_I	1.559	1.00
341_D	403_D	1.549	1.00
461_D	464_N	1.533	1.00
445_Y	496_L	1.520	1.00
474_I	481_L	1.515	1.00
536_A	541_T	1.512	1.00
272_F	276_M	1.506	1.00
543_E	563_N	1.498	1.00
374_L	549_V	1.491	1.00
564_D	568_H	1.490	1.00
352_P	355_D	1.487	1.00
454_A	460_M	1.478	1.00
449_Q	452_E	1.474	1.00
367_P	547_E	1.463	1.00
448_E	451_E	1.445	1.00
107_H	111_M	1.443	1.00
49_K	286_V	1.432	1.00
349_F	384_T	1.431	1.00
161_F	168_S	1.425	1.00
388_L	400_I	1.418	1.00
202_Q	236_R	1.411	1.00
268_Y	272_F	1.408	1.00
45_L	290_S	1.407	1.00
390_T	421_L	1.404	1.00
468_N	473_V	1.385	1.00
361_N	555_V	1.383	1.00
521_A	525_E	1.383	1.00
449_Q	496_L	1.375	1.00
66_W	70_V	1.374	1.00
338_A	403_D	1.374	1.00
226_E	439_Y	1.349	1.00
420_A	494_A	1.343	1.00
377_R	552_E	1.342	1.00
438_A	445_Y	1.339	1.00
525_E	528_K	1.337	1.00
206_S	233_V	1.335	1.00
349_F	388_L	1.322	1.00
447_R	450_I	1.321	1.00
349_F	393_Y	1.321	1.00
433_V	489_I	1.312	1.00
110_G	326_Q	1.308	1.00
462_F	485_Q	1.305	1.00
344_F	389_I	1.301	1.00
563_N	567_E	1.299	1.00
340_G	368_A	1.295	1.00
430_N	473_V	1.294	1.00
347_V	395_I	1.285	1.00
377_R	571_V	1.284	1.00
441_R	445_Y	1.281	1.00
107_H	322_L	1.278	1.00
161_F	165_W	1.273	1.00
373_A	542_I	1.272	1.00
571_V	574_Q	1.271	1.00
442_T	445_Y	1.264	1.00
345_R	363_N	1.254	1.00
378_S	515_S	1.252	1.00
195_N	240_Q	1.251	1.00
395_I	407_L	1.245	1.00
466_M	472_T	1.239	1.00
454_A	459_A	1.232	1.00
188_R	191_N	1.230	1.00
33_A	81_T	1.224	1.00
475_G	478_G	1.222	1.00
199_T	240_Q	1.215	1.00
22_P	99_T	1.215	1.00
462_F	466_M	1.199	1.00
448_E	452_E	1.198	1.00
167_L	287_V	1.198	1.00
218_L	223_Q	1.192	1.00
456_M	495_L	1.188	1.00
341_D	404_G	1.188	1.00
372_V	533_L	1.187	1.00
453_A	495_L	1.184	1.00
389_I	533_L	1.182	1.00
160_M	287_V	1.181	1.00
487_Q	509_S	1.180	1.00
412_L	416_R	1.180	1.00
180_I	184_V	1.178	1.00
548_I	562_H	1.177	1.00
199_T	202_Q	1.177	1.00
405_H	409_E	1.172	1.00
213_G	427_H	1.170	1.00
459_A	463_I	1.167	1.00
348_T	360_R	1.165	1.00
527_Q	532_S	1.165	1.00
210_M	226_E	1.161	1.00
42_T	155_G	1.161	1.00
465_K	485_Q	1.161	1.00
362_I	385_I	1.154	1.00
368_A	500_P	1.153	1.00
117_D	393_Y	1.148	1.00
228_K	232_K	1.145	1.00
446_S	496_L	1.143	1.00
481_L	489_I	1.142	1.00
458_Y	515_S	1.137	1.00
280_T	283_T	1.135	1.00
364_L	385_I	1.124	1.00
451_E	454_A	1.123	1.00
235_N	239_L	1.109	1.00
273_P	278_S	1.106	1.00
224_E	228_K	1.106	1.00
49_K	53_D	1.105	1.00
405_H	410_Y	1.103	1.00
104_L	321_I	1.098	1.00
346_N	397_E	1.097	1.00
102_R	106_G	1.094	1.00
366_I	531_T	1.093	1.00
339_T	368_A	1.088	1.00
62_S	66_W	1.082	1.00
483_G	488_R	1.078	1.00
494_A	502_L	1.076	1.00
536_A	542_I	1.076	1.00
36_L	81_T	1.072	1.00
117_D	387_S	1.068	1.00
463_I	470_L	1.066	1.00
371_T	532_S	1.063	1.00
464_N	469_G	1.061	1.00
123_T	201_G	1.061	1.00
344_F	400_I	1.060	1.00
422_V	494_A	1.060	1.00
174_L	262_A	1.060	1.00
315_C	319_F	1.058	1.00
357_P	396_D	1.055	1.00
562_H	566_L	1.055	1.00
388_L	395_I	1.048	1.00
119_Q	123_T	1.047	1.00
270_A	284_I	1.042	1.00
342_V	389_I	1.038	1.00
120_S	123_T	1.038	1.00
106_G	110_G	1.034	1.00
457_A	492_A	1.033	1.00
506_E	537_H	1.032	1.00
378_S	488_R	1.029	1.00
46_S	50_P	1.025	1.00
461_D	465_K	1.025	1.00
344_F	385_I	1.025	1.00
169_I	173_V	1.023	1.00
370_K	559_R	1.019	1.00
400_I	407_L	1.018	1.00
202_Q	233_V	1.016	1.00
230_F	234_S	1.014	1.00
269_A	273_P	1.012	1.00
107_H	110_G	1.012	1.00
192_I	243_K	1.011	1.00
226_E	229_R	1.010	1.00
500_P	530_R	1.009	1.00
458_Y	522_A	1.006	1.00
91_W	95_K	1.002	1.00
165_W	169_I	0.996	1.00
351_Y	358_A	0.994	1.00
134_Q	314_A	0.994	1.00
426_V	490_A	0.992	1.00
435_N	438_A	0.991	1.00
343_E	404_G	0.989	1.00
502_L	530_R	0.989	1.00
232_K	236_R	0.981	1.00
33_A	84_V	0.979	1.00
550_V	571_V	0.979	1.00
47_L	67_M	0.977	1.00
491_I	504_L	0.976	1.00
414_S	417_N	0.975	1.00
458_Y	521_A	0.973	1.00
217_V	226_E	0.972	1.00
534_V	545_A	0.969	1.00
238_R	242_M	0.969	1.00
26_G	91_W	0.967	1.00
538_R	541_T	0.966	1.00
434_A	470_L	0.965	1.00
350_T	358_A	0.964	1.00
166_Q	278_S	0.964	1.00
468_N	471_D	0.963	1.00
347_V	388_L	0.962	1.00
551_V	556_I	0.957	1.00
373_A	536_A	0.956	1.00
206_S	229_R	0.953	1.00
112_P	327_E	0.952	1.00
383_S	387_S	0.950	1.00
402_M	415_L	0.950	1.00
474_I	480_L	0.949	1.00
243_K	246_S	0.948	1.00
458_Y	525_E	0.947	1.00
453_A	496_L	0.946	1.00
518_A	521_A	0.944	1.00
28_I	32_V	0.942	1.00
450_I	470_L	0.942	1.00
222_G	226_E	0.941	1.00
49_K	283_T	0.941	1.00
342_V	402_M	0.941	1.00
456_M	526_L	0.939	1.00
357_P	397_E	0.938	1.00
154_I	158_I	0.937	1.00
30_A	89_I	0.935	1.00
475_G	479_V	0.930	1.00
99_T	103_R	0.929	1.00
229_R	233_V	0.927	1.00
452_E	498_D	0.927	1.00
464_N	470_L	0.922	1.00
343_E	363_N	0.918	1.00
24_K	28_I	0.914	1.00
225_V	229_R	0.913	1.00
131_D	314_A	0.911	1.00
445_Y	449_Q	0.910	1.00
402_M	501_I	0.910	1.00
184_V	188_R	0.910	1.00
410_Y	415_L	0.908	1.00
33_A	88_C	0.908	1.00
73_G	77_L	0.907	1.00
127_R	320_T	0.906	1.00
437_I	489_I	0.905	1.00
380_S	551_V	0.904	1.00
25_A	29_V	0.903	1.00
434_A	451_E	0.902	1.00
163_Y	283_T	0.900	1.00
181_A	254_I	0.899	1.00
422_V	491_I	0.899	1.00
194_K	198_N	0.898	1.00
361_N	397_E	0.897	1.00
312_M	316_Q	0.895	1.00
455_R	464_N	0.890	1.00
373_A	548_I	0.889	1.00
60_D	63_V	0.889	1.00
508_T	519_I	0.886	1.00
103_R	107_H	0.885	1.00
271_S	275_V	0.885	1.00
514_E	518_A	0.882	1.00
188_R	247_A	0.882	1.00
450_I	496_L	0.879	1.00
457_A	488_R	0.878	1.00
391_R	412_L	0.878	1.00
192_I	240_Q	0.877	1.00
231_D	235_N	0.876	1.00
564_D	567_E	0.874	1.00
50_P	54_D	0.874	1.00
350_T	353_G	0.874	1.00
390_T	503_I	0.873	1.00
274_S	279_L	0.872	1.00
195_N	199_T	0.872	1.00
17_W	21_A	0.871	1.00
235_N	238_R	0.871	1.00
337_R	403_D	0.870	1.00
66_W	69_L	0.870	1.00
170_I	269_A	0.869	1.00
414_S	418_Q	0.869	1.00
195_N	243_K	0.869	1.00
395_I	408_R	0.867	1.00
104_L	128_I	0.864	1.00
115_F	119_Q	0.864	1.00
236_R	240_Q	0.862	1.00
371_T	527_Q	0.862	1.00
98_M	102_R	0.860	1.00
328_K	394_D	0.855	1.00
371_T	524_D	0.852	1.00
114_S	327_E	0.850	1.00
428_L	489_I	0.849	1.00
390_T	419_V	0.848	1.00
428_L	486_R	0.847	1.00
40_S	81_T	0.845	1.00
556_I	559_R	0.843	1.00
157_F	168_S	0.842	1.00
273_P	276_M	0.842	1.00
570_G	573_A	0.841	1.00
325_E	329_D	0.839	1.00
395_I	400_I	0.839	1.00
399_E	408_R	0.839	1.00
215_K	387_S	0.838	1.00
30_A	92_V	0.837	1.00
407_L	415_L	0.835	1.00
335_I	410_Y	0.832	1.00
188_R	192_I	0.825	1.00
552_E	555_V	0.824	1.00
474_I	478_G	0.824	1.00
225_V	228_K	0.822	1.00
40_S	77_L	0.822	1.00
196_M	241_G	0.822	1.00
368_A	403_D	0.822	1.00
499_S	530_R	0.821	1.00
459_A	465_K	0.821	1.00
502_L	527_Q	0.820	1.00
362_I	556_I	0.819	1.00
160_M	168_S	0.816	1.00
516_E	520_Q	0.814	1.00
23_F	95_K	0.814	1.00
352_P	356_V	0.813	1.00
104_L	318_L	0.807	1.00
216_E	220_F	0.807	1.00
331_G	335_I	0.806	1.00
413_A	417_N	0.806	1.00
318_L	322_L	0.805	1.00
432_T	435_N	0.805	1.00
342_V	501_I	0.805	1.00
350_T	355_D	0.804	1.00
228_K	231_D	0.802	1.00
348_T	396_D	0.801	1.00
17_W	20_I	0.801	1.00
340_G	531_T	0.799	1.00
159_M	163_Y	0.799	1.00
179_S	183_R	0.797	1.00
214_H	218_L	0.796	1.00
227_T	231_D	0.796	1.00
335_I	338_A	0.796	1.00
18_P	21_A	0.795	1.00
166_Q	273_P	0.793	1.00
229_R	232_K	0.789	1.00
459_A	489_I	0.789	1.00
345_R	365_K	0.789	1.00
437_I	470_L	0.788	1.00
502_L	532_S	0.787	1.00
124_L	321_I	0.787	1.00
456_M	460_M	0.786	1.00
183_R	187_K	0.782	1.00
112_P	328_K	0.781	1.00
438_A	441_R	0.778	1.00
123_T	127_R	0.776	1.00
34_L	148_R	0.775	1.00
438_A	442_T	0.774	1.00
566_L	573_A	0.772	1.00
191_N	195_N	0.772	1.00
274_S	284_I	0.771	1.00
410_Y	414_S	0.771	1.00
429_F	436_N	0.771	1.00
401_L	404_G	0.770	1.00
233_V	236_R	0.767	1.00
111_M	324_S	0.766	1.00
46_S	159_M	0.765	1.00
240_Q	243_K	0.764	1.00
224_E	227_T	0.764	1.00
419_V	501_I	0.763	1.00
53_D	56_F	0.761	1.00
40_S	74_L	0.761	1.00
80_I	84_V	0.761	1.00
164_S	168_S	0.758	1.00
138_S	308_F	0.758	1.00
333_R	405_H	0.758	1.00
108_M	116_F	0.758	1.00
350_T	356_V	0.757	1.00
50_P	67_M	0.757	1.00
282_G	286_V	0.754	1.00
447_R	470_L	0.753	1.00
242_M	246_S	0.753	1.00
138_S	311_G	0.752	1.00
47_L	70_V	0.751	1.00
47_L	74_L	0.751	1.00
162_Y	165_W	0.751	1.00
562_H	576_H	0.751	1.00
375_V	550_V	0.749	1.00
213_G	216_E	0.749	1.00
114_S	118_K	0.748	1.00
417_N	497_R	0.745	1.00
68_P	72_I	0.744	1.00
483_G	510_A	0.743	1.00
166_Q	169_I	0.742	1.00
333_R	409_E	0.742	1.00
273_P	277_D	0.742	1.00
127_R	131_D	0.741	1.00
466_M	481_L	0.740	1.00
107_H	325_E	0.740	1.00
32_V	36_L	0.740	1.00
425_N	486_R	0.739	1.00
378_S	506_E	0.738	1.00
395_I	399_E	0.738	1.00
467_D	472_T	0.737	1.00
50_P	53_D	0.736	1.00
38_A	151_A	0.736	1.00
199_T	233_V	0.735	1.00
203_V	237_M	0.735	1.00
508_T	516_E	0.734	1.00
63_V	66_W	0.733	1.00
487_Q	510_A	0.733	1.00
569_R	574_Q	0.728	1.00
149_E	300_S	0.728	1.00
454_A	457_A	0.727	1.00
337_R	500_P	0.727	1.00
163_Y	286_V	0.727	1.00
236_R	239_L	0.726	1.00
173_V	176_P	0.725	1.00
328_K	391_R	0.724	1.00
46_S	49_K	0.724	1.00
239_L	243_K	0.722	1.00
39_A	43_F	0.722	1.00
335_I	414_S	0.721	1.00
459_A	470_L	0.721	1.00
462_F	465_K	0.719	1.00
164_S	279_L	0.716	1.00
159_M	162_Y	0.715	1.00
67_M	70_V	0.715	1.00
360_R	553_D	0.715	1.00
395_I	406_D	0.712	1.00
69_L	72_I	0.712	1.00
134_Q	310_R	0.712	1.00
519_I	522_A	0.710	1.00
441_R	498_D	0.708	1.00
70_V	73_G	0.708	1.00
168_S	287_V	0.708	1.00
369_G	531_T	0.707	1.00
83_Y	87_Y	0.704	1.00
520_Q	536_A	0.704	1.00
77_L	81_T	0.703	1.00
36_L	77_L	0.701	1.00
26_G	95_K	0.700	1.00
29_V	88_C	0.700	1.00
430_N	475_G	0.700	1.00
161_F	172_I	0.698	1.00
488_R	515_S	0.697	1.00
401_L	406_D	0.695	1.00
155_G	158_I	0.695	1.00
563_N	566_L	0.695	1.00
332_K	414_S	0.694	1.00
369_G	529_N	0.694	1.00
257_L	261_L	0.693	1.00
366_I	370_K	0.691	1.00
334_V	414_S	0.687	1.00
54_D	63_V	0.685	1.00
54_D	57_G	0.685	1.00
52_L	285_T	0.685	1.00
156_L	293_A	0.684	1.00
104_L	322_L	0.684	1.00
103_R	106_G	0.683	1.00
372_V	559_R	0.682	1.00
187_K	191_N	0.681	1.00
516_E	541_T	0.681	1.00
46_S	163_Y	0.679	1.00
356_V	360_R	0.679	1.00
441_R	497_R	0.678	1.00
387_S	393_Y	0.677	1.00
195_N	198_N	0.676	1.00
150_G	154_I	0.675	1.00
270_A	274_S	0.674	1.00
180_I	183_R	0.673	1.00
458_Y	461_D	0.670	1.00
520_Q	541_T	0.669	1.00
42_T	45_L	0.669	1.00
131_D	197_Q	0.668	1.00
97_V	136_A	0.667	1.00
558_E	571_V	0.666	1.00
197_Q	200_M	0.665	1.00
332_K	335_I	0.664	1.00
311_G	314_A	0.664	1.00
438_A	454_A	0.662	1.00
542_I	545_A	0.662	1.00
386_A	533_L	0.662	1.00
90_S	141_G	0.662	1.00
351_Y	384_T	0.661	1.00
503_I	533_L	0.661	1.00
491_I	495_L	0.661	1.00
135_V	315_C	0.661	1.00
456_M	522_A	0.660	1.00
316_Q	320_T	0.660	1.00
26_G	88_C	0.659	1.00
402_M	407_L	0.659	1.00
433_V	463_I	0.659	1.00
451_E	463_I	0.658	1.00
428_L	474_I	0.658	1.00
334_V	411_T	0.657	1.00
106_G	227_T	0.657	1.00
547_E	561_T	0.657	1.00
156_L	294_L	0.657	1.00
568_H	571_V	0.656	1.00
359_L	551_V	0.655	1.00
100_M	132_S	0.655	1.00
339_T	531_T	0.654	1.00
103_R	322_L	0.653	1.00
344_F	362_I	0.653	1.00
449_Q	453_A	0.653	1.00
18_P	103_R	0.653	1.00
388_L	393_Y	0.650	1.00
120_S	205_T	0.650	1.00
349_F	358_A	0.650	1.00
415_L	419_V	0.644	1.00
431_D	473_V	0.641	1.00
76_I	80_I	0.641	1.00
245_V	249_S	0.639	1.00
256_Q	299_K	0.639	1.00
23_F	26_G	0.638	1.00
158_I	161_F	0.638	1.00
374_L	533_L	0.637	1.00
104_L	132_S	0.634	1.00
113_V	117_D	0.633	1.00
482_S	485_Q	0.633	1.00
441_R	446_S	0.633	1.00
371_T	544_K	0.631	1.00
171_L	291_M	0.631	1.00
403_D	500_P	0.631	1.00
201_G	317_T	0.631	1.00
97_V	101_R	0.630	1.00
347_V	398_G	0.629	1.00
156_L	290_S	0.627	1.00
457_A	491_I	0.626	1.00
53_D	57_G	0.626	1.00
558_E	566_L	0.624	1.00
458_Y	519_I	0.623	1.00
111_M	326_Q	0.623	1.00
571_V	575_L	0.622	1.00
123_T	317_T	0.622	1.00
37_N	82_S	0.622	1.00
425_N	477_N	0.622	1.00
261_L	265_F	0.621	1.00
491_I	519_I	0.621	1.00
430_N	480_L	0.621	1.00
558_E	565_L	0.620	1.00
63_V	67_M	0.620	1.00
21_A	25_A	0.619	1.00
364_L	556_I	0.618	1.00
126_S	204_T	0.618	1.00
562_H	565_L	0.617	1.00
513_T	516_E	0.615	1.00
137_S	307_Q	0.615	1.00
366_I	371_T	0.615	1.00
340_G	500_P	0.614	1.00
146_V	150_G	0.612	1.00
378_S	536_A	0.612	1.00
488_R	511_L	0.612	1.00
436_N	489_I	0.611	1.00
185_V	251_S	0.611	1.00
511_L	515_S	0.611	1.00
93_S	140_S	0.610	1.00
25_A	28_I	0.610	1.00
43_F	74_L	0.610	1.00
447_R	454_A	0.610	1.00
386_A	421_L	0.610	1.00
469_G	472_T	0.608	1.00
107_H	324_S	0.608	1.00
547_E	564_D	0.608	1.00
516_E	540_S	0.608	1.00
432_T	471_D	0.608	1.00
193_S	244_M	0.607	1.00
167_L	273_P	0.607	1.00
296_R	300_S	0.606	1.00
332_K	411_T	0.606	1.00
559_R	564_D	0.606	1.00
314_A	317_T	0.605	1.00
98_M	234_S	0.605	1.00
34_L	85_S	0.604	1.00
269_A	272_F	0.603	1.00
453_A	492_A	0.603	1.00
350_T	397_E	0.603	1.00
326_Q	329_D	0.602	1.00
95_K	98_M	0.600	1.00
367_P	372_V	0.599	1.00
362_I	551_V	0.598	1.00
192_I	195_N	0.598	1.00
181_A	258_I	0.598	1.00
271_S	274_S	0.597	1.00
197_Q	313_A	0.596	1.00
484_G	512_D	0.595	1.00
333_R	336_E	0.595	1.00
441_R	496_L	0.594	1.00
135_V	318_L	0.594	1.00
347_V	363_N	0.593	1.00
338_A	418_Q	0.592	1.00
353_G	396_D	0.591	1.00
422_V	504_L	0.590	1.00
420_A	497_R	0.590	1.00
343_E	399_E	0.590	1.00
243_K	247_A	0.589	1.00
457_A	495_L	0.588	1.00
450_I	453_A	0.588	1.00
412_L	415_L	0.587	1.00
36_L	40_S	0.587	1.00
100_M	135_V	0.587	1.00
455_R	470_L	0.586	1.00
450_I	454_A	0.585	1.00
353_G	357_P	0.585	1.00
49_K	282_G	0.584	1.00
520_Q	544_K	0.584	1.00
452_E	526_L	0.584	1.00
553_D	557_V	0.583	1.00
61_R	65_V	0.582	1.00
126_S	200_M	0.582	1.00
543_E	562_H	0.581	1.00
216_E	219_I	0.579	1.00
353_G	356_V	0.579	1.00
501_I	531_T	0.579	1.00
568_H	573_A	0.578	1.00
126_S	201_G	0.578	1.00
166_Q	269_A	0.576	1.00
548_I	561_T	0.576	1.00
437_I	440_A	0.576	1.00
279_L	284_I	0.576	1.00
279_L	283_T	0.575	1.00
105_F	109_M	0.575	1.00
362_I	549_V	0.575	1.00
62_S	65_V	0.572	1.00
522_A	525_E	0.572	1.00
23_F	96_V	0.572	1.00
65_V	68_P	0.572	1.00
132_S	318_L	0.571	1.00
133_E	136_A	0.570	1.00
115_F	124_L	0.568	1.00
550_V	558_E	0.568	1.00
356_V	553_D	0.568	1.00
199_T	237_M	0.565	1.00
153_I	157_F	0.565	1.00
90_S	94_G	0.564	1.00
195_N	236_R	0.563	1.00
405_H	414_S	0.563	1.00
164_S	167_L	0.562	1.00
512_D	515_S	0.562	1.00
118_K	352_P	0.561	1.00
501_I	533_L	0.561	1.00
438_A	496_L	0.560	1.00
179_S	182_I	0.559	1.00
515_S	519_I	0.559	1.00
184_V	187_K	0.558	1.00
507_A	536_A	0.558	1.00
572_Y	575_L	0.557	1.00
357_P	361_N	0.557	1.00
347_V	400_I	0.556	1.00
94_G	97_V	0.556	1.00
176_P	180_I	0.555	1.00
126_S	130_Y	0.555	1.00
387_S	421_L	0.555	1.00
455_R	461_D	0.554	1.00
495_L	526_L	0.554	1.00
192_I	244_M	0.554	1.00
81_T	84_V	0.553	1.00
360_R	363_N	0.553	1.00
558_E	574_Q	0.552	1.00
402_M	410_Y	0.551	1.00
113_V	392_F	0.550	1.00
378_S	511_L	0.549	1.00
112_P	115_F	0.548	1.00
56_F	59_T	0.547	1.00
460_M	463_I	0.547	1.00
557_V	569_R	0.546	1.00
137_S	141_G	0.545	1.00
239_L	242_M	0.545	1.00
338_A	368_A	0.544	1.00
46_S	286_V	0.544	1.00
22_P	103_R	0.544	1.00
423_S	426_V	0.543	1.00
331_G	414_S	0.543	1.00
198_N	202_Q	0.542	1.00
145_T	300_S	0.541	1.00
566_L	569_R	0.540	1.00
550_V	570_G	0.540	1.00
521_A	524_D	0.539	1.00
331_G	409_E	0.539	1.00
37_N	81_T	0.539	1.00
213_G	429_F	0.538	1.00
165_W	168_S	0.537	1.00
121_T	125_L	0.537	1.00
265_F	269_A	0.537	1.00
366_I	549_V	0.536	1.00
19_T	22_P	0.535	1.00
55_G	63_V	0.535	1.00
433_V	474_I	0.535	1.00
28_I	31_G	0.534	1.00
148_R	152_S	0.534	1.00
433_V	459_A	0.534	1.00
72_I	76_I	0.534	1.00
270_A	273_P	0.533	1.00
70_V	74_L	0.533	1.00
422_V	507_A	0.533	1.00
79_G	83_Y	0.533	1.00
260_S	264_A	0.532	1.00
149_E	153_I	0.531	1.00
122_G	205_T	0.531	1.00
522_A	526_L	0.530	1.00
495_L	522_A	0.529	1.00
550_V	557_V	0.528	1.00
206_S	210_M	0.528	1.00
162_Y	166_Q	0.528	1.00
463_I	466_M	0.528	1.00
384_T	388_L	0.527	1.00
329_D	411_T	0.525	1.00
424_Q	483_G	0.524	1.00
534_V	542_I	0.524	1.00
383_S	386_A	0.524	1.00
177_I	180_I	0.524	1.00
325_E	328_K	0.524	1.00
196_M	244_M	0.523	1.00
375_V	542_I	0.523	1.00
358_A	362_I	0.522	1.00
527_Q	530_R	0.522	1.00
172_I	176_P	0.520	1.00
371_T	529_N	0.520	1.00
127_R	317_T	0.520	1.00
87_Y	91_W	0.520	1.00
454_A	492_A	0.519	1.00
488_R	510_A	0.519	1.00
520_Q	534_V	0.519	1.00
374_L	551_V	0.519	1.00
116_F	119_Q	0.518	1.00
47_L	71_V	0.517	1.00
338_A	402_M	0.517	1.00
330_E	334_V	0.517	1.00
344_F	388_L	0.515	1.00
114_S	352_P	0.515	1.00
367_P	531_T	0.515	1.00
348_T	359_L	0.514	1.00
208_E	212_K	0.514	1.00
130_Y	197_Q	0.513	1.00
149_E	301_L	0.512	1.00
249_S	253_P	0.511	1.00
484_G	488_R	0.511	1.00
391_R	407_L	0.511	1.00
54_D	60_D	0.511	1.00
331_G	411_T	0.510	1.00
200_M	204_T	0.510	1.00
337_R	340_G	0.509	1.00
507_A	534_V	0.509	1.00
109_M	112_P	0.508	1.00
406_D	410_Y	0.507	1.00
533_L	549_V	0.507	1.00
47_L	50_P	0.506	1.00
432_T	473_V	0.506	1.00
26_G	92_V	0.506	1.00
272_F	275_V	0.505	1.00
365_K	559_R	0.505	1.00
201_G	313_A	0.505	1.00
160_M	171_L	0.505	1.00
448_E	455_R	0.505	1.00
23_F	92_V	0.505	1.00
41_D	78_R	0.504	1.00
237_M	241_G	0.504	1.00
38_A	42_T	0.504	1.00
478_G	486_R	0.504	1.00
384_T	393_Y	0.504	1.00
157_F	161_F	0.502	1.00
552_E	574_Q	0.502	1.00
128_I	132_S	0.502	1.00
536_A	540_S	0.502	1.00
508_T	511_L	0.501	1.00
97_V	132_S	0.501	1.00
49_K	163_Y	0.501	1.00
144_I	147_V	0.500	1.00
84_V	88_C	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4ry2A	2	0.9777	100	0.086	Contact Map
4a82A	2	0.9777	100	0.122	Contact Map
3b60A	2	0.9828	100	0.146	Contact Map
4q4hB	1	0.9948	100	0.15	Contact Map
3b5xA	2	0.9828	100	0.152	Contact Map
4f4cA	1	0.9777	100	0.159	Contact Map
4q4hA	1	0.9794	100	0.168	Contact Map
3zdqA	2	0.9622	100	0.174	Contact Map
4q9hA	1	0.9828	100	0.178	Contact Map
4mrsA	2	0.9931	100	0.18	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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