GREMLIN Database
YPJI - Putative UPF0401 protein YpjI
UniProt: P58095 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13309
Length: 90 (72)
Sequences: 100 (53)
Seq/√Len: 6.2

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
44_Q47_H3.3490.86
58_R78_I3.0760.81
42_D49_R2.7470.72
63_A67_E2.7110.71
21_A39_N2.2610.57
52_V59_M2.1450.52
38_I85_T1.9570.46
52_V58_R1.9390.45
20_W39_N1.8920.43
16_G68_P1.7430.38
18_P35_I1.7040.37
30_L34_G1.6820.36
73_G81_S1.6750.36
26_V30_L1.6070.34
13_T25_C1.5670.32
61_W82_G1.4430.29
41_E59_M1.3700.27
37_D51_I1.3620.26
68_P81_S1.3020.25
25_C36_T1.2770.24
28_G64_W1.2640.24
28_G40_I1.2580.23
41_E50_L1.2400.23
58_R79_H1.2060.22
13_T36_T1.1970.22
25_C29_P1.1960.22
67_E77_Y1.1910.22
52_V79_H1.1360.20
19_Q72_E1.1360.20
25_C33_A1.1100.20
56_E63_A1.0990.20
19_Q31_V1.0830.19
18_P64_W1.0810.19
18_P41_E1.0740.19
52_V78_I1.0350.18
17_L28_G1.0150.18
26_V51_I0.9940.17
81_S85_T0.9870.17
78_I84_R0.9630.17
18_P75_N0.9590.17
33_A56_E0.9390.16
42_D77_Y0.9230.16
19_Q38_I0.9010.15
79_H84_R0.8910.15
26_V29_P0.8710.15
38_I57_G0.8690.15
34_G72_E0.8670.15
16_G34_G0.8660.15
55_A76_R0.8560.15
19_Q52_V0.8390.14
29_P54_D0.8370.14
21_A69_D0.8350.14
43_D47_H0.8350.14
14_L72_E0.8350.14
40_I85_T0.8280.14
45_G78_I0.8260.14
60_V78_I0.8210.14
58_R67_E0.8210.14
23_A66_F0.8200.14
22_S74_F0.8180.14
54_D58_R0.8000.14
41_E64_W0.7950.14
24_D53_R0.7900.14
50_L59_M0.7900.14
49_R77_Y0.7830.13
41_E66_F0.7800.13
33_A85_T0.7450.13
38_I48_V0.7420.13
23_A62_R0.7300.13
56_E69_D0.7250.12
13_T33_A0.7240.12
25_C54_D0.6940.12
63_A69_D0.6820.12
13_T16_G0.6780.12
19_Q70_A0.6610.11
43_D75_N0.6510.11
55_A67_E0.6480.11
42_D78_I0.6440.11
21_A83_I0.6400.11
50_L66_F0.6390.11
54_D83_I0.6360.11
52_V60_V0.6160.11
38_I46_I0.6100.11
54_D84_R0.6030.11
65_N84_R0.5990.11
54_D63_A0.5950.11
76_R84_R0.5870.10
17_L44_Q0.5760.10
49_R61_W0.5760.10
79_H83_I0.5740.10
14_L38_I0.5720.10
64_W75_N0.5540.10
49_R82_G0.5540.10
43_D62_R0.5500.10
24_D28_G0.5440.10
53_R65_N0.5400.10
68_P73_G0.5390.10
18_P66_F0.5390.10
63_A71_G0.5330.10
35_I75_N0.5330.10
28_G51_I0.5310.10
63_A73_G0.5240.10
22_S43_D0.5130.09
25_C30_L0.5110.09
22_S48_V0.5100.09
39_N82_G0.5030.09
37_D61_W0.5020.09
25_C73_G0.5000.09
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2hjjA 1 0.7333 100 0.15 Contact Map
5am2A 2 0.4222 18.2 0.937 Contact Map
3cnhA 1 0.4556 16.9 0.938 Contact Map
3magA 2 0.9444 15.3 0.939 Contact Map
2hi0A 2 0.4667 14.4 0.94 Contact Map
1xs3A 1 0.7333 12.1 0.942 Contact Map
2hdoA 1 0.4556 10.8 0.943 Contact Map
2zg6A 2 0.4556 9.1 0.945 Contact Map
5afuJ 1 0.9889 8.8 0.945 Contact Map
2hcfA 1 0.4111 7.5 0.947 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.0051 seconds.