GREMLIN Database
YSAA - Putative electron transport protein YsaA
UniProt: P56256 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG14319
Length: 157 (147)
Sequences: 4185 (2564)
Seq/√Len: 211.5

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
67_A75_I3.1691.00
93_K106_V2.8871.00
69_V98_A2.6161.00
75_I84_V2.5151.00
25_S123_H2.4591.00
128_P131_V2.2651.00
16_R19_E2.2281.00
76_S85_E2.2021.00
63_D68_N2.1651.00
96_M115_A2.1451.00
75_I104_M2.0731.00
26_H119_D2.0681.00
131_V139_L2.0111.00
93_K96_M1.9831.00
64_A77_R1.9281.00
4_F144_V1.9151.00
76_S83_F1.8971.00
15_C18_C1.8611.00
21_A133_A1.8531.00
140_Q150_H1.8421.00
13_I136_T1.8341.00
124_R132_E1.8161.00
5_I120_L1.7941.00
81_H120_L1.7881.00
44_I47_I1.7741.00
122_W126_T1.7571.00
34_A37_P1.7551.00
69_V94_S1.7491.00
107_V116_I1.6971.00
70_C95_C1.5751.00
104_M115_A1.5581.00
12_C18_C1.5531.00
67_A77_R1.5501.00
85_E88_R1.5371.00
72_V90_I1.5271.00
106_V115_A1.5211.00
12_C15_C1.5181.00
8_D11_K1.4881.00
7_A139_L1.4851.00
146_K149_R1.4841.00
25_S129_A1.4551.00
84_V115_A1.4541.00
74_A88_R1.4351.00
7_A55_A1.4181.00
6_I151_R1.3971.00
143_D146_K1.3951.00
144_V148_Q1.3831.00
93_K115_A1.3831.00
83_F122_W1.3771.00
35_L38_D1.3731.00
77_R82_I1.3481.00
34_A116_I1.3461.00
70_C89_C1.3381.00
81_H125_E1.3021.00
64_A67_A1.2891.00
89_C95_C1.2611.00
124_R129_A1.2471.00
26_H123_H1.2451.00
72_V75_I1.2311.00
12_C134_C1.2311.00
5_I131_V1.2211.00
89_C92_C1.2161.00
3_R143_D1.1951.00
15_C134_C1.1791.00
107_V112_K1.1731.00
32_C35_L1.1681.00
86_Q114_R1.0931.00
142_M146_K1.0861.00
55_A139_L1.0731.00
94_S97_L1.0691.00
92_C95_C1.0521.00
57_A139_L1.0451.00
25_S124_R1.0401.00
79_H126_T1.0321.00
107_V113_A1.0211.00
17_T133_A1.0171.00
8_D140_Q1.0071.00
70_C92_C1.0001.00
140_Q151_R0.9911.00
18_C134_C0.9821.00
60_Q117_K0.9691.00
33_A36_S0.9691.00
32_C36_S0.9601.00
35_L39_E0.9541.00
31_D37_P0.9511.00
86_Q112_K0.9501.00
31_D35_L0.9330.99
71_P90_I0.9310.99
60_Q82_I0.9180.99
79_H83_F0.9100.99
120_L141_C0.8910.99
42_S46_V0.8880.99
33_A37_P0.8860.99
17_T20_V0.8790.99
96_M106_V0.8760.99
119_D123_H0.8760.99
3_R141_C0.8720.99
7_A57_A0.8710.99
11_K138_A0.8660.99
137_K140_Q0.8630.99
14_G53_T0.8620.99
4_F147_V0.8590.99
44_I48_K0.8580.99
32_C38_D0.8510.99
147_V150_H0.8510.99
34_A38_D0.8490.99
45_R48_K0.8370.99
65_P98_A0.8360.99
106_V113_A0.8320.99
125_E141_C0.8310.99
17_T135_P0.8300.99
147_V151_R0.8290.99
83_F119_D0.8210.99
108_S111_K0.8170.99
56_V59_H0.8130.98
26_H129_A0.8080.98
13_I135_P0.7940.98
143_D149_R0.7740.98
79_H122_W0.7690.98
9_A54_T0.7620.98
71_P89_C0.7560.98
77_R81_H0.7540.97
5_I57_A0.7500.97
14_G17_T0.7460.97
116_I119_D0.7380.97
123_H126_T0.7340.97
17_T136_T0.7260.97
6_I140_Q0.7190.97
41_I45_R0.7180.97
33_A38_D0.7150.97
93_K108_S0.7110.96
118_C121_C0.7100.96
107_V111_K0.7090.96
41_I44_I0.7090.96
69_V97_L0.7070.96
40_F43_R0.7040.96
20_V24_V0.7030.96
45_R50_H0.6840.96
43_R46_V0.6800.95
71_P95_C0.6800.95
98_A103_A0.6770.95
75_I115_A0.6710.95
105_E116_I0.6680.95
120_L125_E0.6580.95
144_V151_R0.6500.94
23_A28_E0.6450.94
144_V147_V0.6430.94
72_V92_C0.6330.93
64_A82_I0.6330.93
142_M147_V0.6320.93
5_I59_H0.6290.93
148_Q151_R0.6280.93
60_Q125_E0.6280.93
20_V30_Q0.6280.93
84_V104_M0.6220.93
117_K121_C0.6180.93
34_A39_E0.6160.92
57_A120_L0.6110.92
31_D36_S0.6110.92
42_S47_I0.6110.92
37_P44_I0.6090.92
37_P41_I0.6070.92
94_S98_A0.6020.92
62_E65_P0.6010.91
55_A59_H0.6000.91
42_S51_C0.5990.91
90_I94_S0.5980.91
67_A82_I0.5970.91
33_A39_E0.5960.91
145_E149_R0.5870.91
76_S88_R0.5860.90
40_F44_I0.5850.90
17_T24_V0.5850.90
4_F151_R0.5760.90
143_D147_V0.5720.89
24_V133_A0.5700.89
62_E77_R0.5700.89
27_H30_Q0.5690.89
35_L139_L0.5680.89
39_E43_R0.5680.89
31_D39_E0.5620.89
11_K137_K0.5620.89
43_R50_H0.5580.88
74_A77_R0.5580.88
79_H103_A0.5540.88
146_K151_R0.5530.88
146_K150_H0.5520.88
9_A55_A0.5510.88
25_S119_D0.5510.88
13_I19_E0.5470.87
81_H122_W0.5460.87
70_C91_G0.5390.86
108_S113_A0.5320.86
35_L59_H0.5300.85
104_M139_L0.5290.85
5_I141_C0.5290.85
78_E83_F0.5280.85
131_V141_C0.5270.85
30_Q40_F0.5250.85
31_D34_A0.5240.85
27_H88_R0.5200.84
65_P68_N0.5200.84
21_A25_S0.5190.84
20_V23_A0.5160.84
78_E81_H0.5160.84
41_I52_W0.5160.84
140_Q149_R0.5150.84
71_P93_K0.5150.84
12_C22_C0.5150.84
127_G132_E0.5140.84
84_V103_A0.5130.84
72_V76_S0.5110.83
129_A133_A0.5100.83
35_L42_S0.5090.83
97_L102_G0.5070.83
44_I49_D0.5050.83
22_C121_C0.5020.82
75_I83_F0.5020.82
46_V50_H0.5010.82
119_D122_W0.5000.82
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
1kqfB 3 0.9873 100 0.296 Contact Map
1h0hB 1 0.9809 100 0.298 Contact Map
2ivfB 1 0.9873 100 0.298 Contact Map
1ti6B 2 0.9682 100 0.303 Contact Map
2vpzB 2 0.9745 100 0.348 Contact Map
1q16B 2 0.9873 100 0.433 Contact Map
4z3xE 2 0.9108 99.9 0.459 Contact Map
3mm5B 2 0.9873 99.8 0.602 Contact Map
2fgoA 1 0.4841 99.3 0.705 Contact Map
1rgvA 1 0.4841 99.3 0.707 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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