RLMD - ECOLI - GREMLIN Contacts

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RLMD - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD

UniProt:	P55135	Sequences: MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG11247
Length:	433 (410)
Sequences:	5393 (3816)
Seq/√Len:	188.5

ECOLI - RLMD RLMC TRMA
BACSU - RLMCD YFJO

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
51_E	68_R	4.210	1.00
398_S	429_F	3.662	1.00
409_A	430_S	3.651	1.00
99_L	102_R	3.285	1.00
105_S	109_A	3.100	1.00
117_S	410_R	2.984	1.00
20_S	49_N	2.942	1.00
75_E	99_L	2.916	1.00
49_N	71_S	2.851	1.00
399_E	403_K	2.780	1.00
277_R	280_E	2.767	1.00
310_S	337_T	2.716	1.00
19_V	52_V	2.710	1.00
304_L	361_L	2.680	1.00
360_V	376_I	2.629	1.00
66_V	69_R	2.501	1.00
166_A	196_Q	2.498	1.00
52_V	64_A	2.447	1.00
100_Q	419_H	2.373	1.00
158_D	177_R	2.353	1.00
376_I	384_I	2.338	1.00
150_K	155_D	2.271	1.00
106_A	110_R	2.248	1.00
81_C	87_C	2.243	1.00
19_V	32_A	2.243	1.00
249_Y	255_R	2.234	1.00
208_T	230_L	2.227	1.00
45_L	48_E	2.223	1.00
289_R	310_S	2.223	1.00
251_S	255_R	2.202	1.00
295_C	313_G	2.175	1.00
408_I	427_V	2.168	1.00
281_W	410_R	2.148	1.00
53_T	65_K	2.132	1.00
81_C	90_C	2.092	1.00
341_E	346_D	2.089	1.00
362_L	369_A	2.073	1.00
278_A	387_V	2.020	1.00
69_R	72_D	2.000	1.00
87_C	90_C	1.980	1.00
257_T	326_Q	1.924	1.00
44_L	50_A	1.906	1.00
21_V	44_L	1.890	1.00
105_S	118_E	1.867	1.00
377_I	404_A	1.843	1.00
259_S	323_K	1.834	1.00
51_E	70_L	1.827	1.00
97_V	101_Q	1.825	1.00
21_V	32_A	1.824	1.00
291_L	357_F	1.820	1.00
241_T	246_M	1.813	1.00
24_L	46_P	1.806	1.00
56_E	63_R	1.805	1.00
143_Q	181_G	1.789	1.00
373_M	401_L	1.785	1.00
373_M	400_A	1.785	1.00
22_N	33_R	1.759	1.00
87_C	162_C	1.750	1.00
21_V	41_I	1.748	1.00
276_A	280_E	1.744	1.00
295_C	321_V	1.727	1.00
108_L	423_L	1.721	1.00
255_R	330_L	1.719	1.00
126_G	167_P	1.718	1.00
105_S	119_V	1.718	1.00
75_E	96_S	1.716	1.00
358_D	382_I	1.699	1.00
315_E	321_V	1.690	1.00
81_C	162_C	1.686	1.00
394_L	427_V	1.671	1.00
326_Q	329_R	1.667	1.00
117_S	412_A	1.656	1.00
90_C	162_C	1.650	1.00
383_R	430_S	1.647	1.00
394_L	425_S	1.641	1.00
80_R	125_W	1.636	1.00
50_A	69_R	1.630	1.00
342_N	345_E	1.627	1.00
274_M	414_L	1.621	1.00
21_V	50_A	1.620	1.00
247_P	257_T	1.594	1.00
394_L	398_S	1.575	1.00
279_L	307_Q	1.543	1.00
168_Q	196_Q	1.534	1.00
369_A	373_M	1.528	1.00
360_V	381_P	1.502	1.00
108_L	413_M	1.487	1.00
301_T	311_V	1.485	1.00
120_I	414_L	1.472	1.00
272_Q	276_A	1.468	1.00
53_T	67_V	1.453	1.00
37_K	62_A	1.442	1.00
172_L	202_L	1.441	1.00
167_P	171_A	1.438	1.00
112_M	411_L	1.436	1.00
216_R	220_E	1.433	1.00
220_E	223_S	1.432	1.00
169_L	194_L	1.431	1.00
20_S	71_S	1.428	1.00
121_A	124_P	1.427	1.00
39_L	62_A	1.426	1.00
318_P	322_E	1.419	1.00
333_L	336_V	1.415	1.00
106_A	109_A	1.412	1.00
102_R	105_S	1.412	1.00
96_S	99_L	1.409	1.00
222_F	225_S	1.407	1.00
290_V	308_A	1.401	1.00
23_D	106_A	1.397	1.00
254_L	306_T	1.394	1.00
277_R	412_A	1.393	1.00
281_W	428_L	1.388	1.00
25_D	29_Q	1.384	1.00
377_I	405_G	1.380	1.00
80_R	163_P	1.378	1.00
313_G	324_G	1.369	1.00
129_R	268_A	1.363	1.00
32_A	52_V	1.361	1.00
287_E	309_A	1.360	1.00
282_L	359_K	1.357	1.00
122_D	273_K	1.355	1.00
25_D	31_V	1.339	1.00
112_M	398_S	1.335	1.00
54_V	62_A	1.334	1.00
221_R	225_S	1.333	1.00
123_V	269_G	1.326	1.00
180_L	192_V	1.318	1.00
39_L	54_V	1.314	1.00
322_E	325_Q	1.305	1.00
44_L	66_V	1.301	1.00
285_Q	288_D	1.298	1.00
120_I	273_K	1.277	1.00
83_H	159_V	1.275	1.00
136_N	156_I	1.273	1.00
288_D	358_D	1.269	1.00
407_T	430_S	1.263	1.00
398_S	408_I	1.257	1.00
55_T	65_K	1.256	1.00
221_R	224_H	1.244	1.00
32_A	41_I	1.235	1.00
138_L	143_Q	1.233	1.00
252_N	303_P	1.232	1.00
161_Q	170_E	1.225	1.00
37_K	57_D	1.225	1.00
49_N	70_L	1.224	1.00
19_V	39_L	1.222	1.00
254_L	302_L	1.221	1.00
219_L	223_S	1.220	1.00
23_D	110_R	1.218	1.00
324_G	338_F	1.216	1.00
409_A	428_L	1.214	1.00
33_R	38_T	1.211	1.00
112_M	394_L	1.209	1.00
29_Q	63_R	1.195	1.00
131_A	165_L	1.193	1.00
284_V	288_D	1.191	1.00
102_R	106_A	1.187	1.00
302_L	336_V	1.183	1.00
201_T	245_E	1.179	1.00
126_G	163_P	1.175	1.00
253_G	306_T	1.168	1.00
302_L	328_A	1.166	1.00
127_Y	420_T	1.164	1.00
95_A	99_L	1.159	1.00
277_R	281_W	1.157	1.00
168_Q	171_A	1.152	1.00
284_V	290_V	1.149	1.00
109_A	113_K	1.148	1.00
77_E	96_S	1.148	1.00
384_I	406_Y	1.146	1.00
249_Y	257_T	1.144	1.00
313_G	336_V	1.136	1.00
23_D	33_R	1.125	1.00
227_G	246_M	1.123	1.00
328_A	338_F	1.115	1.00
23_D	31_V	1.111	1.00
390_N	393_T	1.111	1.00
54_V	64_A	1.105	1.00
313_G	338_F	1.104	1.00
19_V	41_I	1.092	1.00
190_G	193_E	1.089	1.00
381_P	406_Y	1.089	1.00
111_L	391_P	1.086	1.00
45_L	95_A	1.085	1.00
45_L	94_H	1.084	1.00
91_Q	421_G	1.073	1.00
135_L	146_M	1.070	1.00
87_C	93_Q	1.067	1.00
226_E	245_E	1.060	1.00
134_S	156_I	1.056	1.00
218_K	223_S	1.056	1.00
374_Q	378_K	1.052	1.00
301_T	336_V	1.049	1.00
188_H	236_S	1.048	1.00
289_R	312_V	1.043	1.00
144_L	180_L	1.042	1.00
312_V	339_Y	1.042	1.00
79_P	93_Q	1.039	1.00
273_K	276_A	1.038	1.00
57_D	62_A	1.028	1.00
81_C	89_G	1.025	1.00
144_L	181_G	1.021	1.00
86_V	150_K	1.020	1.00
318_P	340_H	1.017	1.00
277_R	414_L	1.017	1.00
95_A	103_S	1.017	1.00
109_A	116_V	1.015	1.00
82_P	161_Q	1.014	1.00
284_V	308_A	1.014	1.00
138_L	141_T	1.013	1.00
380_E	431_R	1.008	1.00
326_Q	330_L	1.006	1.00
308_A	335_N	1.006	1.00
19_V	34_H	1.006	1.00
21_V	30_G	1.006	1.00
425_S	429_F	1.001	0.99
120_I	412_A	0.998	0.99
227_G	230_L	0.991	0.99
410_R	428_L	0.980	0.99
383_R	428_L	0.980	0.99
382_I	430_S	0.979	0.99
172_L	175_K	0.979	0.99
278_A	385_V	0.976	0.99
168_Q	202_L	0.972	0.99
268_A	271_N	0.971	0.99
293_L	372_V	0.970	0.99
178_A	181_G	0.970	0.99
382_I	406_Y	0.968	0.99
295_C	338_F	0.964	0.99
343_L	347_V	0.962	0.99
305_A	333_L	0.961	0.99
277_R	410_R	0.958	0.99
314_V	346_D	0.949	0.99
160_K	174_P	0.948	0.99
384_I	401_L	0.946	0.99
284_V	359_K	0.943	0.99
374_Q	400_A	0.942	0.99
101_Q	119_V	0.941	0.99
294_F	344_E	0.941	0.99
249_Y	330_L	0.935	0.99
273_K	414_L	0.931	0.99
262_D	323_K	0.929	0.99
262_D	320_L	0.927	0.99
198_T	251_S	0.926	0.99
325_Q	329_R	0.924	0.99
126_G	161_Q	0.922	0.99
426_M	430_S	0.920	0.99
252_N	272_Q	0.920	0.99
271_N	299_N	0.912	0.99
398_S	427_V	0.909	0.99
325_Q	337_T	0.909	0.99
112_M	395_A	0.907	0.99
327_N	331_N	0.906	0.99
277_R	426_M	0.903	0.99
116_V	413_M	0.903	0.99
254_L	333_L	0.902	0.99
220_E	224_H	0.901	0.99
84_F	94_H	0.897	0.99
92_Q	103_S	0.897	0.99
183_L	190_G	0.896	0.99
165_L	169_L	0.894	0.99
247_P	250_D	0.894	0.99
321_V	340_H	0.893	0.99
385_V	428_L	0.892	0.99
19_V	50_A	0.891	0.99
349_K	353_A	0.885	0.99
257_T	330_L	0.883	0.99
233_A	238_I	0.882	0.99
201_T	249_Y	0.881	0.99
134_S	149_R	0.880	0.99
290_V	359_K	0.878	0.99
254_L	305_A	0.877	0.99
125_W	419_H	0.874	0.99
135_L	192_V	0.873	0.99
281_W	412_A	0.871	0.99
30_G	44_L	0.868	0.99
199_S	251_S	0.868	0.99
408_I	429_F	0.866	0.99
295_C	324_G	0.865	0.98
229_D	241_T	0.863	0.98
322_E	326_Q	0.862	0.98
362_L	386_Y	0.861	0.98
218_K	225_S	0.860	0.98
279_L	303_P	0.860	0.98
282_L	385_V	0.856	0.98
235_D	239_L	0.855	0.98
212_S	215_D	0.852	0.98
248_W	251_S	0.851	0.98
252_N	276_A	0.848	0.98
203_M	227_G	0.848	0.98
427_V	430_S	0.842	0.98
274_M	416_M	0.839	0.98
81_C	84_F	0.837	0.98
321_V	338_F	0.835	0.98
117_S	281_W	0.835	0.98
385_V	426_M	0.833	0.98
279_L	306_T	0.831	0.98
357_F	360_V	0.821	0.98
227_G	232_L	0.821	0.98
154_S	185_A	0.819	0.98
411_L	427_V	0.818	0.98
104_K	415_D	0.818	0.98
266_V	416_M	0.817	0.98
48_E	76_R	0.814	0.98
124_P	419_H	0.814	0.98
201_T	226_E	0.814	0.98
270_V	273_K	0.810	0.98
275_V	300_F	0.810	0.98
387_V	426_M	0.810	0.98
283_D	383_R	0.809	0.98
126_G	170_E	0.804	0.98
341_E	347_V	0.802	0.98
290_V	304_L	0.800	0.97
131_A	169_L	0.797	0.97
402_L	408_I	0.796	0.97
278_A	361_L	0.795	0.97
388_S	393_T	0.793	0.97
425_S	430_S	0.793	0.97
400_A	404_A	0.791	0.97
42_P	151_A	0.791	0.97
231_Y	234_P	0.790	0.97
115_D	410_R	0.789	0.97
147_G	156_I	0.789	0.97
90_C	93_Q	0.788	0.97
205_L	260_P	0.785	0.97
312_V	357_F	0.785	0.97
246_M	250_D	0.781	0.97
81_C	93_Q	0.780	0.97
209_A	234_P	0.778	0.97
230_L	233_A	0.776	0.97
131_A	148_F	0.774	0.97
41_I	52_V	0.774	0.97
329_R	334_Q	0.774	0.97
48_E	73_S	0.772	0.97
226_E	230_L	0.772	0.97
321_V	325_Q	0.770	0.97
342_N	346_D	0.767	0.97
108_L	425_S	0.765	0.97
344_E	370_A	0.764	0.97
50_A	66_V	0.761	0.97
178_A	182_S	0.761	0.97
81_C	88_G	0.756	0.96
244_G	250_D	0.752	0.96
227_G	231_Y	0.752	0.96
346_D	349_K	0.751	0.96
245_E	249_Y	0.750	0.96
270_V	416_M	0.747	0.96
34_H	37_K	0.747	0.96
339_Y	346_D	0.745	0.96
386_Y	394_L	0.745	0.96
305_A	311_V	0.744	0.96
198_T	272_Q	0.744	0.96
191_H	210_P	0.743	0.96
377_I	401_L	0.743	0.96
172_L	204_I	0.742	0.96
316_G	342_N	0.741	0.96
75_E	102_R	0.741	0.96
292_D	313_G	0.741	0.96
84_F	91_Q	0.740	0.96
177_R	181_G	0.740	0.96
263_F	389_C	0.734	0.96
408_I	411_L	0.733	0.96
58_K	61_Y	0.732	0.96
165_L	170_E	0.732	0.96
79_P	162_C	0.731	0.96
111_L	395_A	0.730	0.96
275_V	303_P	0.726	0.96
219_L	225_S	0.723	0.95
266_V	394_L	0.722	0.95
97_V	124_P	0.721	0.95
312_V	337_T	0.721	0.95
291_L	347_V	0.721	0.95
105_S	116_V	0.719	0.95
216_R	219_L	0.718	0.95
341_E	345_E	0.717	0.95
289_R	355_N	0.717	0.95
31_V	38_T	0.715	0.95
302_L	333_L	0.715	0.95
295_C	315_E	0.715	0.95
402_L	407_T	0.714	0.95
218_K	221_R	0.714	0.95
258_F	264_I	0.712	0.95
289_R	309_A	0.710	0.95
389_C	424_E	0.709	0.95
319_A	322_E	0.706	0.95
257_T	323_K	0.706	0.95
146_M	177_R	0.706	0.95
269_G	272_Q	0.702	0.95
138_L	145_Q	0.701	0.95
233_A	237_E	0.700	0.95
341_E	348_T	0.699	0.95
129_R	264_I	0.697	0.94
120_I	277_R	0.697	0.94
98_D	102_R	0.695	0.94
84_F	87_C	0.690	0.94
250_D	264_I	0.689	0.94
400_A	403_K	0.689	0.94
166_A	170_E	0.688	0.94
71_S	74_P	0.687	0.94
133_L	173_L	0.687	0.94
149_R	154_S	0.684	0.94
51_E	67_V	0.684	0.94
93_Q	125_W	0.683	0.94
290_V	311_V	0.681	0.94
116_V	119_V	0.678	0.94
135_L	180_L	0.675	0.94
79_P	84_F	0.674	0.93
183_L	189_L	0.672	0.93
31_V	40_F	0.667	0.93
24_L	95_A	0.667	0.93
175_K	178_A	0.666	0.93
184_Q	187_R	0.663	0.93
281_W	426_M	0.662	0.93
110_R	113_K	0.662	0.93
279_L	301_T	0.661	0.93
97_V	415_D	0.661	0.93
176_V	180_L	0.661	0.93
105_S	412_A	0.661	0.93
45_L	73_S	0.661	0.93
89_G	162_C	0.660	0.93
377_I	400_A	0.659	0.93
100_Q	415_D	0.658	0.93
118_E	413_M	0.657	0.93
226_E	231_Y	0.655	0.92
188_H	209_A	0.655	0.92
40_F	61_Y	0.653	0.92
191_H	209_A	0.653	0.92
105_S	413_M	0.652	0.92
345_E	348_T	0.652	0.92
301_T	338_F	0.652	0.92
288_D	308_A	0.649	0.92
73_S	76_R	0.649	0.92
274_M	426_M	0.648	0.92
145_Q	158_D	0.648	0.92
150_K	157_V	0.648	0.92
67_V	71_S	0.646	0.92
196_Q	200_G	0.645	0.92
58_K	63_R	0.645	0.92
52_V	66_V	0.643	0.92
279_L	304_L	0.643	0.92
280_E	410_R	0.642	0.92
362_L	376_I	0.642	0.92
254_L	303_P	0.642	0.92
226_E	229_D	0.641	0.92
79_P	87_C	0.638	0.91
24_L	103_S	0.636	0.91
197_A	248_W	0.635	0.91
169_L	196_Q	0.634	0.91
136_N	145_Q	0.634	0.91
370_A	373_M	0.633	0.91
366_R	422_H	0.633	0.91
265_Q	389_C	0.633	0.91
229_D	233_A	0.632	0.91
44_L	48_E	0.629	0.91
283_D	307_Q	0.629	0.91
230_L	238_I	0.627	0.91
374_Q	404_A	0.625	0.91
229_D	232_L	0.623	0.91
217_E	220_E	0.623	0.91
219_L	222_F	0.620	0.90
189_L	193_E	0.618	0.90
34_H	52_V	0.617	0.90
344_E	371_G	0.617	0.90
77_E	124_P	0.616	0.90
83_H	86_V	0.616	0.90
341_E	344_E	0.615	0.90
223_S	243_S	0.614	0.90
55_T	63_R	0.613	0.90
79_P	90_C	0.612	0.90
48_E	94_H	0.612	0.90
174_P	178_A	0.611	0.90
230_L	234_P	0.611	0.90
312_V	355_N	0.610	0.90
230_L	235_D	0.610	0.90
413_M	423_L	0.609	0.89
121_A	269_G	0.605	0.89
29_Q	42_P	0.604	0.89
54_V	57_D	0.604	0.89
423_L	428_L	0.600	0.89
233_A	239_L	0.599	0.89
231_Y	238_I	0.599	0.89
42_P	66_V	0.598	0.89
371_G	374_Q	0.598	0.89
41_I	44_L	0.593	0.88
310_S	355_N	0.592	0.88
318_P	325_Q	0.592	0.88
182_S	221_R	0.591	0.88
270_V	414_L	0.591	0.88
166_A	169_L	0.590	0.88
196_Q	202_L	0.590	0.88
425_S	428_L	0.590	0.88
297_M	301_T	0.590	0.88
389_C	417_F	0.589	0.88
101_Q	121_A	0.589	0.88
263_F	424_E	0.589	0.88
82_P	160_K	0.589	0.88
32_A	50_A	0.589	0.88
372_V	376_I	0.588	0.88
160_K	177_R	0.587	0.88
84_F	90_C	0.587	0.88
39_L	52_V	0.585	0.88
175_K	222_F	0.585	0.88
83_H	162_C	0.585	0.88
22_N	32_A	0.584	0.87
423_L	429_F	0.579	0.87
25_D	38_T	0.579	0.87
58_K	62_A	0.578	0.87
84_F	93_Q	0.578	0.87
119_V	413_M	0.578	0.87
259_S	262_D	0.577	0.87
281_W	385_V	0.577	0.87
359_K	385_V	0.575	0.87
93_Q	164_I	0.575	0.87
417_F	424_E	0.574	0.87
273_K	277_R	0.573	0.86
32_A	39_L	0.573	0.86
228_L	231_Y	0.572	0.86
24_L	30_G	0.572	0.86
103_S	107_A	0.571	0.86
317_V	320_L	0.570	0.86
150_K	153_S	0.570	0.86
80_R	419_H	0.568	0.86
414_L	426_M	0.568	0.86
380_E	405_G	0.565	0.86
175_K	225_S	0.565	0.86
133_L	293_L	0.564	0.86
84_F	125_W	0.563	0.86
261_R	319_A	0.563	0.86
243_S	246_M	0.562	0.85
87_C	91_Q	0.562	0.85
138_L	142_Q	0.561	0.85
43_G	66_V	0.561	0.85
116_V	411_L	0.560	0.85
314_V	343_L	0.560	0.85
288_D	382_I	0.559	0.85
244_G	248_W	0.559	0.85
380_E	406_Y	0.558	0.85
133_L	146_M	0.558	0.85
72_D	78_T	0.556	0.85
244_G	251_S	0.556	0.85
339_Y	350_Q	0.555	0.85
83_H	87_C	0.554	0.85
83_H	163_P	0.554	0.85
287_E	308_A	0.554	0.85
77_E	80_R	0.553	0.85
33_R	36_G	0.553	0.85
347_V	372_V	0.552	0.84
324_G	336_V	0.551	0.84
182_S	218_K	0.551	0.84
236_S	239_L	0.550	0.84
210_P	234_P	0.549	0.84
127_Y	419_H	0.549	0.84
24_L	45_L	0.548	0.84
375_Q	378_K	0.548	0.84
256_L	297_M	0.546	0.84
111_L	392_A	0.544	0.84
300_F	361_L	0.543	0.83
88_G	157_V	0.543	0.83
226_E	233_A	0.542	0.83
234_P	237_E	0.537	0.83
183_L	188_H	0.537	0.83
207_H	211_L	0.537	0.83
345_E	349_K	0.536	0.83
125_W	163_P	0.536	0.83
233_A	236_S	0.536	0.83
83_H	90_C	0.535	0.83
369_A	400_A	0.535	0.83
130_R	275_V	0.535	0.83
194_L	204_I	0.534	0.82
331_N	335_N	0.533	0.82
82_P	163_P	0.532	0.82
350_Q	354_K	0.532	0.82
241_T	244_G	0.532	0.82
217_E	221_R	0.532	0.82
228_L	233_A	0.531	0.82
263_F	417_F	0.531	0.82
238_I	367_A	0.530	0.82
34_H	54_V	0.529	0.82
127_Y	266_V	0.529	0.82
122_D	270_V	0.527	0.82
184_Q	189_L	0.526	0.81
172_L	194_L	0.526	0.81
211_L	215_D	0.525	0.81
274_M	387_V	0.523	0.81
37_K	61_Y	0.523	0.81
88_G	162_C	0.521	0.81
192_V	206_R	0.521	0.81
110_R	114_H	0.520	0.81
99_L	103_S	0.520	0.81
80_R	93_Q	0.520	0.81
216_R	223_S	0.520	0.81
21_V	69_R	0.518	0.81
343_L	372_V	0.517	0.80
108_L	411_L	0.515	0.80
293_L	360_V	0.515	0.80
252_N	306_T	0.514	0.80
252_N	279_L	0.513	0.80
227_G	233_A	0.513	0.80
256_L	299_N	0.512	0.80
81_C	91_Q	0.512	0.80
264_I	297_M	0.510	0.79
397_D	400_A	0.510	0.79
254_L	297_M	0.508	0.79
344_E	348_T	0.507	0.79
205_L	208_T	0.506	0.79
69_R	76_R	0.506	0.79
232_L	240_E	0.504	0.79
39_L	55_T	0.503	0.79
44_L	69_R	0.503	0.79
345_E	371_G	0.503	0.79
271_N	275_V	0.503	0.79
197_A	250_D	0.502	0.78
300_F	303_P	0.501	0.78
93_Q	162_C	0.501	0.78
33_R	40_F	0.500	0.78

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
1uwvA	1	0.963	100	0.191	Contact Map
2jjqA	1	0.8637	100	0.267	Contact Map
3bt7A	1	0.7875	100	0.446	Contact Map
3vseA	1	0.7483	100	0.71	Contact Map
4dmgA	2	0.7344	100	0.731	Contact Map
1wxxA	2	0.7275	100	0.734	Contact Map
2b78A	1	0.7344	100	0.74	Contact Map
3c0kA	2	0.7252	100	0.758	Contact Map
3k6rA	1	0.5589	100	0.767	Contact Map
3a27A	1	0.4688	100	0.77	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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