CSIE - ECOLI - GREMLIN Contacts

Home
GREMLIN
- Submit - Monomer
- Submit - Complex
Contacts
Metagenomics
- Contacts
- Structures
Structures
- List
Old Projects
- Complexes (2014)
- PFAM (2013)

CSIE - Stationary phase-inducible protein CsiE

UniProt:	P54901	Sequences: MMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVDDDIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRRGFRLCPSFITSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFESRDIHFLCLYLQYCLLQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMALLFSMLRVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYTHLAQALNRSLFAIGIDNTLPEEFARLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQENDLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAPYTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13418
Length:	426 (388)
Sequences:	3420 (2984)
Seq/√Len:	151.5

ECOLI - CSIE FRVR BGLG
BACSU - MANR LICR MTLR LICT

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
80_V	162_Q	4.965	1.00
289_A	316_D	4.309	1.00
42_V	47_A	4.163	1.00
23_T	39_L	3.655	1.00
356_E	360_R	3.617	1.00
16_R	50_D	3.614	1.00
64_L	78_G	3.426	1.00
285_P	320_G	3.395	1.00
63_Q	82_N	3.312	1.00
248_L	301_A	2.900	1.00
139_R	190_E	2.898	1.00
307_E	313_H	2.892	1.00
55_G	68_T	2.766	1.00
80_V	84_R	2.718	1.00
246_R	252_R	2.681	1.00
244_H	305_G	2.622	1.00
394_T	397_L	2.614	1.00
256_E	332_Q	2.592	1.00
239_K	260_C	2.590	1.00
64_L	76_V	2.511	1.00
62_H	89_H	2.486	1.00
79_T	82_N	2.390	1.00
67_T	77_E	2.382	1.00
42_V	46_I	2.341	1.00
408_D	415_Q	2.314	1.00
340_Q	367_L	2.310	1.00
42_V	50_D	2.294	1.00
300_R	316_D	2.243	1.00
342_I	372_M	2.242	1.00
341_I	390_I	2.239	1.00
256_E	329_W	2.198	1.00
240_R	309_E	2.159	1.00
289_A	296_V	2.144	1.00
345_T	348_D	2.110	1.00
84_R	207_E	2.087	1.00
299_T	323_A	2.079	1.00
415_Q	418_Q	2.055	1.00
196_Q	202_P	2.032	1.00
411_L	416_Q	2.011	1.00
266_H	318_E	2.009	1.00
340_Q	368_N	2.002	1.00
245_F	298_T	1.984	1.00
36_F	47_A	1.974	1.00
84_R	162_Q	1.954	1.00
353_A	356_E	1.926	1.00
283_T	317_E	1.863	1.00
343_L	359_L	1.827	1.00
245_F	326_F	1.817	1.00
363_T	420_R	1.806	1.00
282_N	320_G	1.801	1.00
273_R	318_E	1.798	1.00
135_L	194_H	1.794	1.00
17_R	53_E	1.767	1.00
400_F	403_P	1.759	1.00
78_G	83_Q	1.750	1.00
17_R	54_T	1.738	1.00
249_G	298_T	1.732	1.00
411_L	419_I	1.721	1.00
189_Q	208_P	1.720	1.00
21_L	54_T	1.689	1.00
69_G	72_G	1.682	1.00
137_S	144_F	1.671	1.00
295_L	323_A	1.651	1.00
303_L	319_S	1.650	1.00
270_A	274_S	1.598	1.00
246_R	256_E	1.595	1.00
266_H	321_L	1.587	1.00
342_I	386_A	1.577	1.00
34_A	44_D	1.574	1.00
259_L	329_W	1.567	1.00
295_L	299_T	1.565	1.00
295_L	327_G	1.557	1.00
348_D	351_R	1.554	1.00
345_T	352_E	1.545	1.00
57_E	86_C	1.527	1.00
30_T	75_R	1.523	1.00
67_T	75_R	1.511	1.00
55_G	66_L	1.501	1.00
259_L	263_L	1.486	1.00
161_L	165_A	1.482	1.00
348_D	352_E	1.482	1.00
303_L	322_V	1.479	1.00
253_F	326_F	1.472	1.00
54_T	66_L	1.457	1.00
188_A	191_I	1.447	1.00
242_V	260_C	1.430	1.00
180_E	205_P	1.421	1.00
78_G	84_R	1.419	1.00
44_D	48_S	1.416	1.00
32_T	35_T	1.413	1.00
362_L	420_R	1.409	1.00
390_I	405_I	1.391	1.00
17_R	50_D	1.388	1.00
282_N	321_L	1.386	1.00
37_S	47_A	1.368	1.00
65_T	77_E	1.364	1.00
391_A	395_M	1.363	1.00
373_S	376_A	1.354	1.00
391_A	404_L	1.350	1.00
403_P	422_M	1.342	1.00
405_I	415_Q	1.338	1.00
122_N	125_D	1.333	1.00
390_I	407_T	1.333	1.00
204_P	207_E	1.330	1.00
245_F	299_T	1.330	1.00
241_L	299_T	1.323	1.00
287_E	291_L	1.322	1.00
12_S	15_Q	1.320	1.00
386_A	402_P	1.305	1.00
118_G	121_R	1.304	1.00
281_D	317_E	1.300	1.00
299_T	302_A	1.295	1.00
391_A	406_Y	1.291	1.00
234_L	238_I	1.290	1.00
140_L	190_E	1.286	1.00
370_K	386_A	1.281	1.00
263_L	322_V	1.274	1.00
304_A	307_E	1.274	1.00
338_E	367_L	1.268	1.00
64_L	83_Q	1.258	1.00
320_G	323_A	1.256	1.00
13_A	53_E	1.244	1.00
133_V	153_C	1.242	1.00
243_N	247_E	1.241	1.00
297_R	300_R	1.240	1.00
51_I	55_G	1.236	1.00
21_L	58_I	1.228	1.00
33_M	44_D	1.224	1.00
282_N	317_E	1.223	1.00
132_L	136_C	1.219	1.00
340_Q	370_K	1.218	1.00
32_T	44_D	1.215	1.00
238_I	260_C	1.211	1.00
318_E	321_L	1.211	1.00
266_H	325_I	1.208	1.00
151_F	155_Y	1.206	1.00
241_L	302_A	1.194	1.00
362_L	416_Q	1.171	1.00
347_N	351_R	1.169	1.00
253_F	329_W	1.166	1.00
82_N	85_L	1.162	1.00
128_N	198_R	1.148	1.00
299_T	303_L	1.142	1.00
25_F	86_C	1.137	1.00
417_E	420_R	1.132	1.00
34_A	38_E	1.132	1.00
185_F	189_Q	1.129	1.00
23_T	36_F	1.124	1.00
340_Q	385_G	1.101	0.99
189_Q	205_P	1.101	0.99
84_R	158_Y	1.101	0.99
188_A	212_A	1.100	0.99
331_M	358_Q	1.099	0.99
19_Q	40_N	1.098	0.99
274_S	315_S	1.094	0.99
182_C	185_F	1.094	0.99
188_A	192_G	1.092	0.99
121_R	125_D	1.089	0.99
325_I	328_A	1.089	0.99
242_V	259_L	1.083	0.99
129_L	157_Q	1.082	0.99
252_R	256_E	1.078	0.99
296_V	323_A	1.070	0.99
355_I	411_L	1.069	0.99
241_L	326_F	1.069	0.99
130_Q	149_I	1.065	0.99
80_V	207_E	1.063	0.99
21_L	90_W	1.063	0.99
363_T	416_Q	1.063	0.99
58_I	64_L	1.061	0.99
155_Y	214_L	1.059	0.99
270_A	314_L	1.056	0.99
270_A	273_R	1.053	0.99
125_D	128_N	1.053	0.99
260_C	264_Y	1.045	0.99
296_V	300_R	1.044	0.99
296_V	320_G	1.041	0.99
134_N	149_I	1.041	0.99
417_E	421_K	1.038	0.99
188_A	215_F	1.035	0.99
288_F	320_G	1.030	0.99
414_H	418_Q	1.029	0.99
88_F	155_Y	1.028	0.99
300_R	319_S	1.025	0.99
19_Q	23_T	1.024	0.99
40_N	47_A	1.015	0.99
396_P	406_Y	1.011	0.99
145_E	219_R	1.009	0.99
243_N	254_Y	1.008	0.99
230_R	264_Y	1.005	0.99
351_R	354_Q	1.003	0.99
125_D	129_L	1.003	0.99
405_I	422_M	1.003	0.99
84_R	159_C	1.002	0.99
358_Q	411_L	1.000	0.99
130_Q	150_H	0.999	0.99
30_T	73_S	0.996	0.99
249_G	253_F	0.996	0.99
241_L	305_G	0.992	0.99
185_F	208_P	0.987	0.99
295_L	330_L	0.985	0.99
53_E	56_R	0.982	0.99
317_E	320_G	0.981	0.99
357_Q	361_E	0.977	0.99
377_F	400_F	0.975	0.99
19_Q	39_L	0.972	0.99
88_F	158_Y	0.971	0.99
238_I	242_V	0.965	0.98
407_T	411_L	0.965	0.98
32_T	73_S	0.964	0.98
121_R	157_Q	0.960	0.98
296_V	316_D	0.960	0.98
405_I	419_I	0.960	0.98
136_C	191_I	0.958	0.98
295_L	326_F	0.958	0.98
269_Q	273_R	0.957	0.98
161_L	164_H	0.957	0.98
244_H	247_E	0.955	0.98
271_L	312_V	0.951	0.98
238_I	267_L	0.949	0.98
285_P	317_E	0.948	0.98
176_R	209_L	0.947	0.98
64_L	86_C	0.945	0.98
32_T	48_S	0.944	0.98
343_L	356_E	0.943	0.98
163_H	207_E	0.938	0.98
232_R	236_Q	0.938	0.98
242_V	326_F	0.937	0.98
45_D	48_S	0.933	0.98
345_T	351_R	0.931	0.98
273_R	280_I	0.928	0.98
155_Y	159_C	0.927	0.98
184_E	212_A	0.926	0.98
283_T	320_G	0.925	0.98
341_I	366_P	0.922	0.98
33_M	37_S	0.922	0.98
245_F	249_G	0.922	0.98
185_F	212_A	0.916	0.98
288_F	323_A	0.914	0.98
78_G	162_Q	0.913	0.98
21_L	76_V	0.911	0.98
23_T	40_N	0.909	0.98
83_Q	162_Q	0.907	0.98
266_H	273_R	0.906	0.98
238_I	264_Y	0.905	0.98
303_L	314_L	0.901	0.98
305_G	309_E	0.898	0.98
24_L	66_L	0.893	0.97
364_L	367_L	0.893	0.97
62_H	86_C	0.893	0.97
346_G	395_M	0.891	0.97
192_G	208_P	0.889	0.97
400_F	404_L	0.881	0.97
388_L	419_I	0.880	0.97
16_R	46_I	0.880	0.97
413_T	417_E	0.876	0.97
258_G	332_Q	0.875	0.97
48_S	68_T	0.872	0.97
340_Q	387_A	0.872	0.97
163_H	203_V	0.867	0.97
355_I	407_T	0.866	0.97
133_V	137_S	0.866	0.97
38_E	41_G	0.866	0.97
180_E	185_F	0.860	0.97
137_S	140_L	0.858	0.97
86_C	90_W	0.857	0.97
149_I	153_C	0.857	0.97
163_H	204_P	0.854	0.97
158_Y	162_Q	0.854	0.97
347_N	352_E	0.851	0.97
244_H	248_L	0.846	0.96
285_P	289_A	0.843	0.96
17_R	57_E	0.842	0.96
389_I	402_P	0.841	0.96
44_D	73_S	0.841	0.96
62_H	82_N	0.836	0.96
151_F	214_L	0.835	0.96
185_F	188_A	0.835	0.96
128_N	132_L	0.833	0.96
355_I	416_Q	0.831	0.96
331_M	334_N	0.828	0.96
193_R	196_Q	0.825	0.96
146_S	375_K	0.825	0.96
240_R	243_N	0.824	0.96
302_A	305_G	0.824	0.96
352_E	371_H	0.821	0.96
355_I	394_T	0.820	0.96
78_G	82_N	0.819	0.96
48_S	70_Y	0.819	0.96
145_E	148_D	0.819	0.96
411_L	415_Q	0.812	0.96
238_I	241_L	0.812	0.96
389_I	400_F	0.809	0.95
246_R	249_G	0.808	0.95
162_Q	207_E	0.807	0.95
212_A	216_S	0.807	0.95
416_Q	420_R	0.806	0.95
22_L	90_W	0.798	0.95
156_L	211_M	0.797	0.95
235_R	264_Y	0.796	0.95
176_R	206_D	0.795	0.95
159_C	163_H	0.795	0.95
169_P	210_F	0.794	0.95
345_T	350_E	0.793	0.95
271_L	275_L	0.792	0.95
32_T	72_G	0.790	0.95
235_R	260_C	0.789	0.95
211_M	214_L	0.784	0.95
343_L	390_I	0.783	0.95
298_T	302_A	0.783	0.95
179_A	212_A	0.782	0.95
13_A	50_D	0.782	0.95
399_L	403_P	0.781	0.95
257_Q	261_D	0.776	0.94
372_M	380_T	0.773	0.94
68_T	74_Y	0.770	0.94
408_D	412_T	0.763	0.94
253_F	256_E	0.762	0.94
49_L	52_S	0.759	0.94
389_I	404_L	0.759	0.94
280_I	317_E	0.759	0.94
70_Y	73_S	0.758	0.94
230_R	233_Q	0.758	0.94
267_L	270_A	0.758	0.94
267_L	285_P	0.757	0.94
321_L	325_I	0.757	0.94
347_N	350_E	0.755	0.93
132_L	194_H	0.755	0.93
309_E	312_V	0.754	0.93
350_E	354_Q	0.751	0.93
358_Q	410_T	0.746	0.93
46_I	50_D	0.745	0.93
299_T	326_F	0.745	0.93
262_Q	328_A	0.743	0.93
259_L	332_Q	0.742	0.93
25_F	87_L	0.741	0.93
217_M	269_Q	0.741	0.93
136_C	187_V	0.737	0.93
174_L	177_R	0.733	0.92
20_I	54_T	0.732	0.92
214_L	217_M	0.732	0.92
343_L	352_E	0.732	0.92
234_L	264_Y	0.730	0.92
84_R	169_P	0.730	0.92
189_Q	193_R	0.729	0.92
54_T	58_I	0.729	0.92
258_G	262_Q	0.728	0.92
273_R	320_G	0.728	0.92
350_E	353_A	0.725	0.92
346_G	374_V	0.722	0.92
270_A	315_S	0.722	0.92
166_G	170_Q	0.722	0.92
244_H	302_A	0.721	0.92
206_D	209_L	0.720	0.92
322_V	325_I	0.720	0.92
38_E	44_D	0.719	0.92
48_S	51_I	0.713	0.91
48_S	74_Y	0.711	0.91
148_D	155_Y	0.709	0.91
307_E	314_L	0.708	0.91
192_G	196_Q	0.707	0.91
80_V	83_Q	0.703	0.91
16_R	42_V	0.703	0.91
185_F	205_P	0.702	0.91
160_L	164_H	0.699	0.91
142_K	150_H	0.698	0.91
398_P	401_S	0.693	0.90
282_N	292_Y	0.693	0.90
155_Y	158_Y	0.692	0.90
360_R	413_T	0.691	0.90
30_T	72_G	0.691	0.90
157_Q	161_L	0.689	0.90
237_S	241_L	0.685	0.90
137_S	375_K	0.685	0.90
168_T	204_P	0.684	0.90
285_P	316_D	0.682	0.90
273_R	314_L	0.681	0.89
273_R	276_F	0.678	0.89
132_L	135_L	0.677	0.89
300_R	304_A	0.672	0.89
348_D	354_Q	0.672	0.89
236_Q	309_E	0.671	0.89
270_A	318_E	0.670	0.89
196_Q	208_P	0.667	0.88
358_Q	416_Q	0.664	0.88
14_P	18_C	0.663	0.88
125_D	164_H	0.661	0.88
339_K	388_L	0.659	0.88
306_F	314_L	0.658	0.88
51_I	74_Y	0.657	0.88
345_T	349_S	0.656	0.88
288_F	319_S	0.656	0.88
274_S	318_E	0.653	0.87
185_F	209_L	0.653	0.87
272_N	324_V	0.651	0.87
365_L	420_R	0.650	0.87
359_L	390_I	0.649	0.87
262_Q	353_A	0.649	0.87
360_R	364_L	0.646	0.87
409_L	415_Q	0.646	0.87
43_D	49_L	0.646	0.87
48_S	52_S	0.644	0.87
352_E	356_E	0.643	0.87
182_C	212_A	0.642	0.87
418_Q	421_K	0.641	0.86
120_A	126_D	0.641	0.86
329_W	332_Q	0.641	0.86
121_R	124_Y	0.636	0.86
92_R	96_R	0.631	0.86
27_P	59_L	0.630	0.85
348_D	395_M	0.630	0.85
301_A	304_A	0.629	0.85
79_T	378_L	0.629	0.85
265_T	269_Q	0.627	0.85
180_E	209_L	0.627	0.85
59_L	65_T	0.625	0.85
307_E	310_Y	0.624	0.85
171_F	176_R	0.622	0.85
325_I	350_E	0.622	0.85
130_Q	134_N	0.620	0.85
12_S	18_C	0.619	0.84
255_D	333_E	0.619	0.84
241_L	303_L	0.619	0.84
340_Q	369_I	0.619	0.84
358_Q	362_L	0.618	0.84
293_P	297_R	0.618	0.84
45_D	49_L	0.616	0.84
282_N	289_A	0.616	0.84
37_S	44_D	0.615	0.84
91_L	96_R	0.615	0.84
44_D	68_T	0.613	0.84
360_R	368_N	0.613	0.84
207_E	210_F	0.613	0.84
186_Q	189_Q	0.612	0.84
386_A	390_I	0.611	0.84
187_V	191_I	0.610	0.84
292_Y	320_G	0.610	0.84
339_K	403_P	0.609	0.84
341_I	388_L	0.608	0.83
204_P	214_L	0.608	0.83
48_S	69_G	0.606	0.83
280_I	321_L	0.605	0.83
283_T	321_L	0.604	0.83
407_T	419_I	0.604	0.83
33_M	51_I	0.603	0.83
80_V	166_G	0.600	0.83
79_T	83_Q	0.600	0.83
119_I	126_D	0.599	0.83
266_H	269_Q	0.599	0.83
150_H	153_C	0.598	0.82
20_I	50_D	0.598	0.82
66_L	315_S	0.597	0.82
271_L	310_Y	0.597	0.82
33_M	47_A	0.594	0.82
47_A	50_D	0.594	0.82
345_T	355_I	0.594	0.82
256_E	331_M	0.592	0.82
325_I	332_Q	0.592	0.82
218_L	270_A	0.591	0.82
273_R	277_A	0.591	0.82
289_A	320_G	0.590	0.82
31_A	338_E	0.589	0.81
26_Q	83_Q	0.589	0.81
144_F	148_D	0.588	0.81
227_A	232_R	0.588	0.81
15_Q	18_C	0.582	0.81
73_S	354_Q	0.581	0.81
125_D	161_L	0.581	0.81
244_H	308_S	0.581	0.81
289_A	293_P	0.580	0.80
188_A	208_P	0.580	0.80
299_T	322_V	0.579	0.80
273_R	282_N	0.579	0.80
126_D	129_L	0.579	0.80
213_L	216_S	0.576	0.80
192_G	201_Q	0.575	0.80
68_T	390_I	0.570	0.79
51_I	54_T	0.570	0.79
16_R	19_Q	0.569	0.79
17_R	40_N	0.568	0.79
196_Q	203_V	0.564	0.79
252_R	255_D	0.564	0.79
80_V	163_H	0.564	0.79
174_L	385_G	0.563	0.78
418_Q	422_M	0.562	0.78
18_C	93_R	0.561	0.78
339_K	343_L	0.560	0.78
32_T	74_Y	0.560	0.78
122_N	202_P	0.559	0.78
124_Y	157_Q	0.558	0.78
262_Q	332_Q	0.558	0.78
22_L	26_Q	0.557	0.78
35_T	92_R	0.557	0.78
44_D	350_E	0.557	0.78
380_T	386_A	0.556	0.78
236_Q	311_G	0.554	0.77
238_I	311_G	0.553	0.77
233_Q	309_E	0.552	0.77
216_S	276_F	0.551	0.77
369_I	372_M	0.551	0.77
234_L	237_S	0.550	0.77
78_G	86_C	0.548	0.77
48_S	55_G	0.548	0.77
287_E	290_R	0.548	0.77
64_L	84_R	0.548	0.77
20_I	383_P	0.547	0.77
246_R	253_F	0.547	0.77
294_R	297_R	0.545	0.76
235_R	261_D	0.545	0.76
213_L	217_M	0.545	0.76
54_T	76_V	0.545	0.76
30_T	267_L	0.545	0.76
148_D	151_F	0.544	0.76
31_A	39_L	0.544	0.76
314_L	318_E	0.543	0.76
350_E	410_T	0.542	0.76
326_F	386_A	0.541	0.76
269_Q	272_N	0.541	0.76
185_F	355_I	0.541	0.76
85_L	89_H	0.539	0.75
357_Q	360_R	0.539	0.75
374_V	395_M	0.538	0.75
363_T	390_I	0.537	0.75
294_R	298_T	0.537	0.75
270_A	278_I	0.537	0.75
11_L	15_Q	0.536	0.75
300_R	303_L	0.536	0.75
24_L	55_G	0.536	0.75
407_T	415_Q	0.535	0.75
39_L	194_H	0.534	0.75
247_E	250_N	0.534	0.75
154_L	363_T	0.534	0.75
120_A	157_Q	0.533	0.75
373_S	377_F	0.533	0.75
203_V	211_M	0.531	0.74
315_S	318_E	0.531	0.74
262_Q	329_W	0.530	0.74
123_F	164_H	0.530	0.74
288_F	419_I	0.530	0.74
231_D	384_R	0.527	0.74
217_M	278_I	0.527	0.74
347_N	359_L	0.526	0.74
240_R	306_F	0.526	0.74
21_L	24_L	0.526	0.74
28_G	167_I	0.525	0.74
285_P	288_F	0.525	0.74
259_L	302_A	0.523	0.73
288_F	317_E	0.522	0.73
292_Y	327_G	0.522	0.73
301_A	305_G	0.522	0.73
240_R	308_S	0.521	0.73
19_Q	42_V	0.521	0.73
354_Q	358_Q	0.521	0.73
188_A	195_W	0.520	0.73
414_H	417_E	0.519	0.73
292_Y	323_A	0.517	0.72
142_K	149_I	0.516	0.72
356_E	371_H	0.516	0.72
366_P	369_I	0.515	0.72
245_F	250_N	0.515	0.72
42_V	375_K	0.513	0.72
196_Q	199_A	0.511	0.72
11_L	228_H	0.510	0.71
155_Y	203_V	0.510	0.71
190_E	193_R	0.510	0.71
364_L	373_S	0.508	0.71
37_S	98_C	0.507	0.71
90_W	94_G	0.507	0.71
57_E	62_H	0.507	0.71
129_L	132_L	0.507	0.71
135_L	224_L	0.506	0.71
328_A	331_M	0.505	0.71
344_L	397_L	0.505	0.71
270_A	322_V	0.504	0.71
345_T	354_Q	0.504	0.71
23_T	27_P	0.504	0.71
207_E	259_L	0.504	0.71
277_A	282_N	0.503	0.70
154_L	157_Q	0.502	0.70
136_C	190_E	0.502	0.70
249_G	302_A	0.500	0.70
60_R	170_Q	0.500	0.70

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
4r6iA	2	0.9178	100	0.245	Contact Map
3sqnA	2	0.9108	100	0.315	Contact Map
1h99A	2	0.5141	99.9	0.631	Contact Map
3ufeA	2	0.2512	99.2	0.798	Contact Map
3rioA	1	0.3944	99.2	0.799	Contact Map
3czcA	1	0.1995	99.1	0.808	Contact Map
1vkrA	1	0.2019	98.7	0.83	Contact Map
1tvmA	1	0.2512	98.6	0.838	Contact Map
2l2qA	1	0.2089	97.8	0.871	Contact Map
1e2bA	1	0.2066	97.5	0.876	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

Page generated in 0.012 seconds.