GREMLIN Database
NIFJ - Probable pyruvate-flavodoxin oxidoreductase
UniProt: P52647 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13183
Length: 1174 (1151)
Sequences: 1191 (714)
Seq/√Len: 21.1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
586_I605_L5.8841.00
539_R614_E5.8111.00
14_A80_F5.6861.00
595_Q599_E5.6281.00
983_N1060_P5.2601.00
1026_G1097_Y4.9921.00
305_S308_H4.6601.00
158_K241_Q4.4791.00
321_A383_L4.4741.00
1058_A1102_R4.3971.00
1058_A1100_D4.2621.00
377_L381_A4.2201.00
240_E244_N3.9011.00
506_P536_K3.8651.00
1040_I1049_T3.8241.00
637_D641_T3.8191.00
447_W472_E3.7621.00
12_S44_L3.5891.00
813_F851_Y3.5711.00
159_S235_V3.5341.00
978_L986_I3.5161.00
247_S253_Q3.5111.00
547_K551_E3.4221.00
344_L359_V3.3861.00
245_D248_A3.3601.00
260_Y284_D3.3321.00
267_R291_E3.3301.00
266_E318_R3.3241.00
150_L187_I3.3201.00
1084_Q1128_H3.3041.00
103_F156_T3.2711.00
532_V536_K3.2561.00
1103_R1108_K3.2551.00
531_A535_Q3.2531.00
486_F511_L3.2131.00
139_A165_H3.1131.00
93_L134_C3.0791.00
506_P537_K3.0550.99
725_D735_K3.0470.99
113_A873_N3.0370.99
237_D307_K3.0340.99
685_K688_L3.0140.99
268_V313_L2.9990.99
257_F305_S2.9530.99
158_K192_P2.9300.99
485_D505_K2.9090.99
124_S221_Y2.9060.99
141_N277_G2.8970.99
901_L912_L2.8840.99
18_S153_Q2.8770.99
683_I771_M2.8320.99
913_L917_K2.8250.99
70_A77_S2.8040.99
111_T367_S2.7770.99
974_L986_I2.7380.99
256_P308_H2.7360.99
291_E384_N2.7220.99
1040_I1053_I2.7130.99
599_E603_Q2.6790.99
280_E297_K2.6760.99
504_L538_A2.6710.99
1123_E1144_E2.6120.98
16_R184_D2.5890.98
683_I776_H2.5480.98
231_W661_P2.5440.98
518_A613_E2.5340.98
533_L538_A2.5280.98
668_G861_T2.5210.98
677_I746_T2.5050.98
338_L342_T2.5010.98
67_V77_S2.5000.98
828_I989_L2.4990.98
985_N1063_S2.4750.98
828_I960_I2.4580.97
93_L164_I2.4320.97
580_A584_G2.4300.97
993_C1073_E2.4260.97
280_E476_R2.4000.97
444_S581_E2.3950.97
240_E256_P2.3880.97
111_T221_Y2.3660.97
255_Q258_E2.3580.97
183_A186_T2.3510.97
210_V664_T2.3490.97
211_I667_M2.3470.97
681_I742_P2.3410.97
688_L759_D2.3360.97
509_I539_R2.3270.96
271_L275_A2.2940.96
510_F540_F2.2850.96
959_L984_V2.2790.96
971_F1028_S2.2470.96
271_L279_C2.2460.96
619_P622_P2.2450.96
587_A595_Q2.2300.95
140_A276_I2.2110.95
267_R319_S2.2100.95
278_T478_A2.2090.95
240_E308_H2.2060.95
277_G478_A2.1870.95
1100_D1103_R2.1810.95
269_I376_V2.1810.95
978_L1064_L2.1760.95
72_Q212_R2.1690.95
360_I383_L2.1670.95
149_A165_H2.1650.95
73_T889_T2.1470.94
1151_A1155_Q2.1440.94
197_D201_A2.1390.94
283_V380_F2.1260.94
802_D805_T2.1250.94
812_L863_D2.1190.94
1117_P1162_A2.1080.94
382_E385_A2.1050.94
306_A343_A2.1000.94
296_L313_L2.0940.94
914_T931_A2.0940.94
287_L293_V2.0910.94
129_V164_I2.0860.93
650_L653_A2.0770.93
655_P658_A2.0660.93
193_Q196_I2.0560.93
703_A740_V2.0550.93
256_P312_A2.0550.93
267_R384_N2.0490.93
112_V124_S2.0470.93
313_L343_A2.0460.93
269_I279_C2.0460.93
587_A602_W2.0360.93
668_G671_R2.0230.92
333_A337_Y2.0170.92
90_I129_V2.0170.92
115_H221_Y2.0150.92
512_L540_F2.0090.92
1123_E1151_A2.0060.92
220_T855_L1.9980.92
577_S580_A1.9890.92
10_V145_A1.9880.92
1100_D1112_A1.9750.91
1016_H1019_R1.9700.91
551_E607_L1.9690.91
270_I309_L1.9670.91
504_L508_G1.9600.91
960_I989_L1.9570.91
502_E650_L1.9520.91
279_C376_V1.9290.90
197_D947_R1.9180.90
22_A66_T1.9170.90
279_C282_V1.9150.90
344_L357_P1.9110.90
533_L617_L1.9050.90
307_K311_Q1.8870.89
1048_Q1052_A1.8790.89
247_S258_E1.8780.89
159_S238_H1.8760.89
1019_R1142_V1.8730.89
313_L344_L1.8570.89
540_F615_V1.8550.89
757_A767_A1.8520.88
490_H558_I1.8510.88
247_S252_R1.8500.88
531_A626_N1.8480.88
221_Y224_S1.8420.88
685_K769_N1.8390.88
281_E477_S1.8390.88
558_I562_M1.8390.88
94_Y131_Q1.8300.88
271_L276_I1.8280.88
724_L727_K1.8240.88
134_C164_I1.8240.88
1029_M1064_L1.8230.88
437_N582_L1.8210.88
532_V538_A1.8190.88
309_L313_L1.8170.87
596_D600_R1.8090.87
135_A161_V1.8040.87
891_D982_E1.8040.87
191_M196_I1.7910.87
112_V221_Y1.7890.87
360_I382_E1.7880.87
275_A371_F1.7800.86
703_A741_A1.7720.86
230_P401_T1.7700.86
780_E783_N1.7670.86
90_I131_Q1.7670.86
390_A403_L1.7640.86
194_V198_A1.7610.86
507_G537_K1.7600.86
436_N582_L1.7600.86
283_V293_V1.7580.86
845_T873_N1.7570.86
831_L1053_I1.7510.85
253_Q258_E1.7450.85
319_S358_R1.7400.85
1005_T1009_A1.7390.85
577_S581_E1.7360.85
1007_L1153_D1.7300.85
413_P419_E1.7270.85
47_V188_L1.7220.84
321_A360_I1.7210.84
495_I529_V1.7140.84
114_T221_Y1.7120.84
544_N547_K1.7080.84
790_L793_I1.7050.84
1053_I1065_I1.7010.84
275_A376_V1.6990.84
378_A405_L1.6920.83
926_R930_A1.6900.83
1121_A1124_E1.6890.83
607_L610_E1.6880.83
1049_T1053_I1.6870.83
1084_Q1129_E1.6860.83
721_L787_F1.6860.83
515_P544_N1.6660.82
438_I451_G1.6620.82
319_S386_A1.6450.82
106_H149_A1.6440.82
759_D766_K1.6430.81
309_L343_A1.6410.81
635_A644_A1.6400.81
925_R928_Q1.6400.81
509_I569_L1.6310.81
703_A746_T1.6230.81
319_S383_L1.6140.80
1042_L1082_H1.6120.80
257_F298_V1.6100.80
1127_L1136_N1.6080.80
237_D256_P1.6070.80
759_D767_A1.6040.80
13_V187_I1.6030.80
893_H951_A1.6030.80
1086_R1090_A1.6030.80
694_H1046_L1.6000.80
8_G35_Q1.5900.79
883_G959_L1.5620.78
437_N560_T1.5600.78
1162_A1166_G1.5600.78
1123_E1127_L1.5550.78
331_A334_E1.5540.78
47_V191_M1.5510.78
211_I858_T1.5490.77
38_A42_N1.5450.77
296_L312_A1.5430.77
296_L309_L1.5400.77
535_Q622_P1.5320.77
96_L134_C1.5290.76
115_H227_A1.5260.76
115_H228_T1.5250.76
1107_G1110_P1.5190.76
1121_A1151_A1.5180.76
500_M529_V1.5170.76
72_Q210_V1.5160.76
211_I853_G1.5130.76
739_Q783_N1.5130.76
118_S367_S1.5130.76
832_T860_Y1.5100.76
1087_Q1128_H1.5060.75
41_G1016_H1.5030.75
527_Q624_S1.5020.75
583_Q606_A1.4900.75
517_S520_E1.4880.74
757_A766_K1.4700.74
489_C510_F1.4680.73
750_L753_E1.4640.73
937_N946_L1.4580.73
564_M608_A1.4550.73
723_S735_K1.4540.73
693_N706_A1.4540.73
831_L839_M1.4500.72
203_A208_H1.4480.72
50_D892_Q1.4480.72
599_E602_W1.4460.72
287_L291_E1.4460.72
283_V295_V1.4440.72
208_H950_D1.4430.72
319_S360_I1.4400.72
13_V80_F1.4300.71
15_F40_A1.4290.71
840_L890_V1.4220.71
752_V769_N1.4200.71
693_N808_L1.4190.71
216_A224_S1.4160.71
1084_Q1087_Q1.4160.71
915_A921_T1.4150.71
72_Q664_T1.4110.70
233_N401_T1.4090.70
279_C283_V1.4080.70
12_S80_F1.4060.70
391_R403_L1.4010.70
4_I181_P1.3950.69
1145_Q1148_K1.3920.69
423_Y851_Y1.3910.69
539_R616_P1.3880.69
375_C395_G1.3880.69
223_Q369_K1.3870.69
851_Y989_L1.3820.69
267_R293_V1.3800.69
912_L932_L1.3780.69
865_N930_A1.3680.68
372_G375_C1.3620.68
720_S783_N1.3590.67
492_L514_T1.3580.67
381_A408_P1.3580.67
304_F343_A1.3580.67
376_V394_V1.3570.67
942_A946_L1.3570.67
225_R329_P1.3570.67
1149_D1153_D1.3540.67
552_C600_R1.3510.67
160_R198_A1.3500.67
158_K245_D1.3490.67
144_E299_R1.3490.67
668_G862_T1.3450.67
1104_A1156_K1.3450.67
215_S850_I1.3440.67
337_Y390_A1.3420.66
828_I851_Y1.3400.66
676_N743_E1.3360.66
140_A297_K1.3360.66
1078_L1087_Q1.3360.66
542_V613_E1.3350.66
1124_E1127_L1.3340.66
671_R861_T1.3290.66
155_A238_H1.3280.66
1042_L1049_T1.3250.65
346_E390_A1.3230.65
436_N589_S1.3230.65
898_L902_D1.3220.65
100_L231_W1.3210.65
436_N585_A1.3190.65
560_T582_L1.3190.65
898_L916_L1.3180.65
96_L105_L1.3110.65
892_Q895_V1.3100.64
100_L202_R1.3090.64
850_I873_N1.3040.64
978_L1035_V1.3030.64
144_E297_K1.3030.64
1130_Q1134_R1.3010.64
1041_S1085_M1.2860.63
830_L1049_T1.2850.63
845_T850_I1.2810.63
31_T35_Q1.2760.62
135_A163_F1.2730.62
1088_L1125_T1.2730.62
34_E1012_K1.2720.62
211_I214_T1.2710.62
375_C407_L1.2710.62
270_I320_V1.2710.62
545_A549_A1.2700.62
908_I935_Q1.2680.62
65_A92_T1.2650.62
848_S989_L1.2650.62
44_L80_F1.2640.62
550_R680_E1.2610.61
212_R664_T1.2550.61
50_D899_R1.2540.61
354_E357_P1.2530.61
828_I832_T1.2530.61
752_V768_I1.2520.61
714_M735_K1.2520.61
771_M776_H1.2510.61
665_W855_L1.2510.61
782_I785_D1.2480.61
421_L503_R1.2450.60
240_E255_Q1.2440.60
112_V971_F1.2430.60
371_F376_V1.2430.60
773_R777_V1.2400.60
129_V136_M1.2360.60
61_A986_I1.2340.60
310_L343_A1.2340.60
831_L960_I1.2250.59
75_A889_T1.2240.59
911_E928_Q1.2220.59
298_V305_S1.2210.59
931_A935_Q1.2200.59
750_L754_V1.2190.59
160_R202_R1.2190.59
93_L105_L1.2160.59
518_A616_P1.2160.59
514_T521_V1.2020.58
1087_Q1129_E1.1970.57
570_T573_L1.1950.57
585_A589_S1.1950.57
688_L767_A1.1940.57
79_S105_L1.1930.57
341_M345_A1.1910.57
262_H316_S1.1900.57
1052_A1098_R1.1900.57
425_L491_Q1.1890.57
1059_Y1102_R1.1860.57
255_Q312_A1.1830.56
128_A131_Q1.1790.56
284_D476_R1.1790.56
1103_R1112_A1.1770.56
346_E391_R1.1740.56
518_A542_V1.1710.56
17_T153_Q1.1690.56
14_A44_L1.1680.55
638_F665_W1.1660.55
247_S255_Q1.1640.55
1091_T1150_A1.1630.55
299_R308_H1.1630.55
781_K785_D1.1600.55
500_M503_R1.1600.55
636_P672_W1.1600.55
898_L919_D1.1580.55
797_K809_I1.1570.55
224_S659_L1.1550.55
163_F239_V1.1550.55
800_R809_I1.1530.54
977_V984_V1.1520.54
1103_R1109_L1.1490.54
138_C166_F1.1480.54
1050_V1054_Q1.1460.54
260_Y287_L1.1460.54
863_D867_R1.1450.54
1010_V1135_L1.1440.54
1078_L1128_H1.1430.54
237_D308_H1.1420.54
1103_R1110_P1.1420.54
12_S146_Q1.1400.54
697_A830_L1.1390.54
1122_P1150_A1.1370.53
268_V312_A1.1360.53
260_Y297_K1.1360.53
816_S829_K1.1360.53
716_N786_F1.1350.53
568_H575_G1.1340.53
454_V652_D1.1340.53
182_L249_A1.1330.53
723_S737_V1.1280.53
709_V737_V1.1270.53
221_Y228_T1.1250.53
534_N621_N1.1190.52
831_L987_L1.1170.52
639_V643_T1.1160.52
587_A599_E1.1150.52
813_F828_I1.1140.52
1102_R1112_A1.1130.52
1041_S1089_T1.1120.52
205_N208_H1.1110.52
564_M609_R1.1110.52
1142_V1145_Q1.1100.52
667_M858_T1.1080.51
721_L737_V1.1070.51
332_Q342_T1.1030.51
136_M301_Y1.1030.51
828_I860_Y1.1030.51
914_T928_Q1.1020.51
258_E299_R1.1020.51
103_F134_C1.1010.51
77_S105_L1.1010.51
150_L182_L1.0980.51
683_I775_E1.0950.51
38_A1012_K1.0940.51
542_V615_V1.0940.51
711_P735_K1.0940.51
559_N590_Y1.0930.50
1026_G1039_Q1.0930.50
789_N793_I1.0930.50
158_K242_A1.0920.50
1060_P1102_R1.0910.50
230_P660_P1.0910.50
981_T1034_H1.0910.50
264_Q292_K1.0890.50
57_M884_L1.0890.50
139_A145_A1.0870.50
645_A650_L1.0840.50
728_S732_R1.0810.50
100_L160_R1.0800.50
151_I246_F1.0800.50
188_L193_Q1.0780.49
654_L658_A1.0780.49
111_T124_S1.0780.49
100_L161_V1.0760.49
887_R891_D1.0750.49
937_N949_A1.0750.49
156_T161_V1.0740.49
1070_P1081_S1.0720.49
1102_R1105_D1.0710.49
1054_Q1058_A1.0700.49
711_P733_G1.0690.49
182_L187_I1.0680.49
337_Y391_R1.0670.49
810_T864_A1.0670.49
584_G587_A1.0670.49
842_A883_G1.0640.49
148_F153_Q1.0600.48
176_I438_I1.0590.48
728_S804_R1.0590.48
1027_V1030_M1.0580.48
17_T150_L1.0580.48
22_A67_V1.0570.48
323_L379_V1.0560.48
212_R662_D1.0550.48
686_E724_L1.0540.48
207_E926_R1.0520.48
520_E524_R1.0520.48
636_P639_V1.0510.48
87_L90_I1.0510.48
137_L1064_L1.0510.48
337_Y403_L1.0500.48
381_A384_N1.0490.48
106_H165_H1.0490.48
56_E63_A1.0480.47
974_L978_L1.0480.47
696_V706_A1.0470.47
1126_L1132_F1.0460.47
163_F235_V1.0460.47
1001_A1014_G1.0410.47
463_L498_Y1.0410.47
117_L457_S1.0380.47
484_A487_V1.0360.47
1030_M1111_L1.0350.47
117_L850_I1.0350.47
103_F157_L1.0340.47
546_A679_E1.0290.46
722_H780_E1.0260.46
244_N253_Q1.0260.46
114_T225_R1.0240.46
710_P791_P1.0240.46
269_I282_V1.0240.46
361_G383_L1.0220.46
215_S854_N1.0200.46
933_R949_A1.0200.46
67_V105_L1.0190.46
267_R360_I1.0180.45
1030_M1097_Y1.0130.45
890_V955_K1.0120.45
2_I181_P1.0110.45
521_V542_V1.0100.45
67_V96_L1.0100.45
725_D733_G1.0100.45
276_I295_V1.0090.45
504_L532_V1.0080.45
178_K446_P1.0060.45
374_D408_P1.0060.45
262_H287_L1.0050.45
444_S577_S1.0020.44
721_L783_N0.9990.44
1038_A1052_A0.9980.44
783_N786_F0.9970.44
688_L766_K0.9960.44
13_V182_L0.9960.44
277_G476_R0.9960.44
884_L982_E0.9950.44
582_L585_A0.9940.44
427_S460_A0.9940.44
729_R732_R0.9940.44
978_L1029_M0.9930.44
14_A18_S0.9910.44
73_T886_F0.9860.43
262_H292_K0.9860.43
117_L849_S0.9830.43
575_G579_L0.9830.43
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597_L1046_L0.5070.18
92_T878_D0.5070.18
15_F569_L0.5060.18
380_F384_N0.5050.18
95_K457_S0.5050.18
140_A1016_H0.5050.18
425_L592_S0.5050.18
1058_A1112_A0.5050.18
380_F1053_I0.5050.18
703_A737_V0.5050.18
1027_V1031_M0.5050.18
818_A826_P0.5050.18
198_A288_T0.5040.18
681_I741_A0.5040.18
934_Q937_N0.5040.18
126_V561_V0.5040.18
345_A358_R0.5040.18
267_R388_P0.5040.18
22_A490_H0.5040.18
547_K613_E0.5030.17
266_E292_K0.5030.17
694_H727_K0.5030.17
177_N423_Y0.5030.17
727_K774_L0.5020.17
451_G489_C0.5020.17
899_R903_Q0.5020.17
534_N624_S0.5020.17
129_V134_C0.5010.17
340_V544_N0.5010.17
1102_R1106_E0.5010.17
696_V987_L0.5010.17
21_I52_P0.5010.17
338_L341_M0.5010.17
837_D1124_E0.5010.17
886_F889_T0.5010.17
176_I295_V0.5000.17
731_M797_K0.5000.17
1009_A1020_K0.5000.17
754_V1081_S0.5000.17
719_A884_L0.5000.17
93_L1064_L0.5000.17
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
5c4iA 2 0.3245 100 0.882 Contact Map
5c4iB 1 0.2428 100 0.91 Contact Map
5c4iC 2 0.2555 100 0.912 Contact Map
1yd7A 1 0.1346 100 0.921 Contact Map
2raaA 1 0.1516 100 0.935 Contact Map
3on3A 2 0.1499 100 0.938 Contact Map
3g2eA 4 0.1559 100 0.941 Contact Map
1qs0B 2 0.2675 99.9 0.962 Contact Map
1umdB 2 0.2564 99.8 0.966 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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