GREMLIN Database
YFJX - Uncharacterized protein YfjX
UniProt: P52139 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG13210
Length: 152 (133)
Sequences: 315 (184)
Seq/√Len: 16.0

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
77_F104_E7.2981.00
101_M109_A7.0431.00
116_S120_C4.0571.00
54_M106_A3.4330.99
71_L75_G3.3490.99
111_C115_Y2.5580.95
54_M110_V2.5190.95
57_F110_V2.2480.91
69_Y79_A1.9910.85
33_W51_F1.9570.84
19_L73_N1.9570.84
132_Y135_R1.9490.83
80_P107_G1.9010.82
97_N146_A1.8880.81
131_Y135_R1.8530.80
68_F75_G1.8190.79
105_A143_E1.7450.76
106_A110_V1.7400.75
90_L106_A1.6860.73
47_E51_F1.6770.73
107_G111_C1.6670.72
79_A88_W1.6000.69
37_F46_L1.5870.68
91_L98_G1.5210.65
54_M90_L1.4880.63
105_A141_H1.4670.62
21_V106_A1.4360.60
99_A150_I1.4360.60
90_L110_V1.4120.59
79_A131_Y1.3930.58
112_L135_R1.3830.57
19_L72_S1.3240.54
59_D68_F1.3100.53
55_D68_F1.2960.52
109_A150_I1.2870.52
69_Y110_V1.2770.51
112_L151_I1.2720.51
135_R139_L1.2460.49
116_S119_A1.2190.48
94_M97_N1.2070.47
29_H38_G1.2050.47
113_I150_I1.2010.47
75_G133_R1.1960.46
21_V69_Y1.1670.45
88_W101_M1.1560.44
126_A130_H1.1530.44
127_M130_H1.1220.42
116_S128_T1.1100.42
101_M108_I1.0860.40
36_H76_A1.0850.40
25_P28_Q1.0720.39
34_P47_E1.0700.39
46_L111_C1.0460.38
26_D53_W1.0450.38
138_A148_M1.0450.38
144_S148_M1.0340.37
92_N113_I1.0120.36
34_P51_F1.0120.36
82_A88_W1.0040.36
60_E98_G0.9940.35
130_H133_R0.9910.35
53_W120_C0.9880.35
115_Y128_T0.9840.35
113_I151_I0.9630.34
111_C150_I0.9600.33
77_F137_Y0.9560.33
68_F109_A0.9530.33
26_D131_Y0.9500.33
53_W56_R0.9470.33
79_A104_E0.9460.33
97_N150_I0.9410.32
92_N117_H0.9360.32
104_E116_S0.9270.32
95_N138_A0.9230.32
104_E141_H0.9210.31
64_G95_N0.9190.31
28_Q70_T0.9030.31
52_A114_E0.8970.30
71_L74_G0.8930.30
49_R118_H0.8780.29
95_N152_D0.8770.29
118_H150_I0.8470.28
19_L71_L0.8410.28
49_R121_L0.8410.28
33_W115_Y0.8360.27
64_G81_D0.8350.27
33_W78_M0.8300.27
24_V31_R0.8230.27
68_F103_A0.8170.27
88_W117_H0.8160.26
116_S124_C0.8090.26
88_W103_A0.8090.26
87_K100_E0.8050.26
98_G138_A0.7930.25
86_D89_H0.7660.24
21_V59_D0.7630.24
136_D151_I0.7590.24
16_E36_H0.7520.24
16_E129_E0.7510.24
31_R67_S0.7450.23
61_Y112_L0.7320.23
143_E151_I0.7310.23
82_A87_K0.7260.23
89_H145_S0.7170.22
87_K103_A0.7160.22
36_H122_T0.7140.22
50_I108_I0.7050.22
60_E125_D0.7050.22
42_Q118_H0.7000.22
92_N95_N0.6990.22
68_F133_R0.6990.22
56_R103_A0.6970.21
48_P55_D0.6960.21
68_F93_G0.6920.21
36_H119_A0.6910.21
80_P111_C0.6900.21
65_I86_D0.6890.21
124_C149_R0.6890.21
98_G142_P0.6870.21
21_V89_H0.6830.21
54_M151_I0.6830.21
29_H152_D0.6790.21
75_G141_H0.6770.21
46_L49_R0.6760.21
24_V147_I0.6670.20
50_I114_E0.6650.20
32_F60_E0.6650.20
21_V53_W0.6590.20
35_Q43_W0.6570.20
56_R124_C0.6550.20
57_F113_I0.6450.19
91_L132_Y0.6440.19
103_A107_G0.6430.19
54_M111_C0.6410.19
63_G66_W0.6340.19
76_A110_V0.6330.19
17_F22_T0.6320.19
74_G95_N0.6240.19
111_C139_L0.6240.19
26_D31_R0.6240.19
72_S92_N0.6240.19
83_D88_W0.6230.19
33_W111_C0.6200.19
27_E148_M0.6190.19
50_I58_C0.6170.18
35_Q130_H0.6170.18
92_N120_C0.6110.18
77_F116_S0.6030.18
61_Y64_G0.6030.18
74_G90_L0.6020.18
45_T121_L0.6010.18
73_N76_A0.6000.18
24_V39_T0.5980.18
67_S81_D0.5940.18
73_N151_I0.5930.18
77_F124_C0.5920.18
72_S76_A0.5910.18
112_L136_D0.5890.18
16_E86_D0.5870.17
25_P144_S0.5830.17
67_S149_R0.5800.17
39_T93_G0.5780.17
83_D86_D0.5760.17
102_S109_A0.5740.17
58_C136_D0.5720.17
38_G47_E0.5650.17
106_A126_A0.5640.17
36_H72_S0.5630.17
63_G68_F0.5610.17
46_L118_H0.5600.17
110_V149_R0.5600.17
32_F96_G0.5570.16
113_I132_Y0.5530.16
54_M82_A0.5520.16
34_P64_G0.5480.16
94_M113_I0.5460.16
56_R65_I0.5440.16
19_L50_I0.5440.16
49_R65_I0.5430.16
20_S23_Q0.5420.16
57_F109_A0.5400.16
58_C112_L0.5390.16
67_S79_A0.5390.16
95_N136_D0.5370.16
29_H64_G0.5370.16
18_E86_D0.5350.16
36_H130_H0.5340.16
71_L92_N0.5270.16
21_V145_S0.5260.16
17_F101_M0.5240.15
135_R149_R0.5240.15
26_D108_I0.5190.15
60_E104_E0.5180.15
57_F92_N0.5160.15
28_Q97_N0.5140.15
26_D140_Q0.5120.15
54_M78_M0.5110.15
58_C131_Y0.5080.15
32_F68_F0.5050.15
43_W76_A0.5000.15
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2wj9A 2 0.9539 100 0.112 Contact Map
2kmgA 1 0.9079 100 0.132 Contact Map
5rubA 2 0.6974 15.8 0.952 Contact Map
5bs1A 2 0.3947 10.2 0.956 Contact Map
1vw1A 5 0.9276 8.6 0.957 Contact Map
4gr2A 2 0.3487 8 0.958 Contact Map
1rwhA 1 0.4737 7.1 0.959 Contact Map
3r8wA 2 0.9803 6.2 0.96 Contact Map
3cxbA 1 0.4342 6.1 0.96 Contact Map
2gkmA 2 0.2829 4.3 0.963 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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