TILS - ECOLI - GREMLIN Contacts

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TILS - tRNA(Ile)-lysidine synthase

UniProt:	P52097	Sequences: MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAEQESLLDELLADDLAHCQSPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALVRIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVTGQSENIVPWQTWLQPLELPAGLGSVQLNAGGDIRPPRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRDTTPLLFYGETLIAAAGVFVTQEGVAEGENGVSFVWQKTLS	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG13220
Length:	432 (393)
Sequences:	3177 (2753)
Seq/√Len:	138.9

ECOLI - TILS TTCA
BACSU - TILS
HALSA - Q9HSK1

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
26_T	67_V	3.753	1.00
56_N	178_E	3.640	1.00
50_H	58_D	3.616	1.00
183_D	193_R	3.451	1.00
27_V	167_A	3.186	1.00
183_D	192_L	2.837	1.00
46_A	68_C	2.716	1.00
78_E	103_R	2.714	1.00
199_Q	206_A	2.664	1.00
45_R	76_V	2.616	1.00
160_R	164_V	2.596	1.00
61_V	65_E	2.565	1.00
46_A	73_V	2.532	1.00
118_D	206_A	2.525	1.00
47_I	100_A	2.489	1.00
52_G	79_R	2.457	1.00
50_H	57_A	2.401	1.00
50_H	61_V	2.398	1.00
375_R	383_E	2.374	1.00
61_V	77_V	2.369	1.00
121_C	209_T	2.361	1.00
30_H	166_W	2.336	1.00
105_L	111_L	2.336	1.00
19_F	64_C	2.327	1.00
19_F	46_A	2.326	1.00
23_L	167_A	2.323	1.00
254_R	279_W	2.298	1.00
176_E	181_Q	2.283	1.00
29_L	46_A	2.260	1.00
218_E	255_A	2.220	1.00
126_L	186_D	2.127	1.00
65_E	69_Q	2.121	1.00
53_L	89_I	2.077	1.00
14_Q	43_A	2.073	1.00
225_E	250_S	2.015	1.00
124_F	213_A	1.997	1.00
15_I	112_V	1.983	1.00
30_H	170_Y	1.957	1.00
212_S	216_C	1.910	1.00
19_F	26_T	1.893	1.00
18_A	101_F	1.892	1.00
365_L	368_I	1.870	1.00
68_C	75_L	1.867	1.00
17_V	32_L	1.861	1.00
60_W	175_I	1.824	1.00
23_L	163_L	1.820	1.00
45_R	108_G	1.809	1.00
67_V	71_W	1.802	1.00
112_V	152_I	1.782	1.00
23_L	27_V	1.781	1.00
90_E	179_S	1.740	1.00
13_R	110_V	1.733	1.00
23_L	176_E	1.729	1.00
120_Q	140_M	1.712	1.00
31_Q	155_L	1.696	1.00
381_W	394_T	1.686	1.00
226_L	229_D	1.684	1.00
26_T	172_L	1.678	1.00
30_H	71_W	1.677	1.00
14_Q	45_R	1.668	1.00
17_V	28_L	1.667	1.00
242_Q	245_P	1.658	1.00
91_A	95_Q	1.658	1.00
113_T	151_L	1.656	1.00
30_H	172_L	1.653	1.00
124_F	209_T	1.652	1.00
358_V	397_L	1.646	1.00
62_T	65_E	1.635	1.00
59_A	175_I	1.598	1.00
240_T	306_Q	1.595	1.00
228_A	260_R	1.583	1.00
128_L	212_S	1.574	1.00
33_V	73_V	1.572	1.00
398_F	403_L	1.570	1.00
219_Q	256_A	1.568	1.00
61_V	79_R	1.567	1.00
66_N	70_Q	1.567	1.00
54_S	178_E	1.560	1.00
135_A	220_E	1.558	1.00
19_F	67_V	1.553	1.00
189_F	201_R	1.552	1.00
399_Y	402_T	1.552	1.00
129_K	198_L	1.549	1.00
378_K	382_Q	1.543	1.00
361_K	392_D	1.536	1.00
16_L	45_R	1.525	1.00
365_L	374_G	1.524	1.00
13_R	109_E	1.521	1.00
222_L	226_L	1.516	1.00
32_L	112_V	1.511	1.00
29_L	68_C	1.505	1.00
47_I	104_T	1.502	1.00
121_C	195_V	1.484	1.00
58_D	79_R	1.483	1.00
129_K	202_W	1.472	1.00
396_L	403_L	1.458	1.00
30_H	34_Q	1.438	1.00
18_A	113_T	1.432	1.00
33_V	71_W	1.427	1.00
134_P	216_C	1.420	1.00
31_Q	35_W	1.416	1.00
124_F	139_A	1.413	1.00
159_T	162_E	1.408	1.00
190_L	194_V	1.408	1.00
220_E	224_D	1.404	1.00
98_Y	113_T	1.403	1.00
165_Q	169_Q	1.395	1.00
193_R	197_L	1.394	1.00
398_F	401_E	1.388	1.00
230_D	253_R	1.386	1.00
49_V	80_V	1.382	1.00
16_L	104_T	1.376	1.00
68_C	73_V	1.368	1.00
49_V	78_E	1.365	1.00
47_I	101_F	1.336	1.00
377_L	381_W	1.336	1.00
121_C	213_A	1.329	1.00
105_L	149_T	1.328	1.00
27_V	166_W	1.314	1.00
164_V	168_R	1.304	1.00
62_T	66_N	1.291	1.00
143_V	150_R	1.288	1.00
117_L	210_A	1.280	1.00
55_A	60_W	1.280	1.00
95_Q	99_Q	1.270	1.00
244_V	305_S	1.259	1.00
65_E	75_L	1.259	1.00
133_G	136_G	1.245	1.00
231_L	235_Q	1.241	1.00
359_R	398_F	1.239	1.00
16_L	47_I	1.225	1.00
23_L	164_V	1.223	1.00
102_A	105_L	1.221	1.00
215_L	272_R	1.221	1.00
167_A	172_L	1.203	1.00
50_H	79_R	1.201	1.00
88_G	91_A	1.195	1.00
76_V	107_P	1.194	1.00
366_L	380_I	1.193	1.00
379_K	382_Q	1.192	1.00
167_A	174_W	1.191	1.00
137_L	212_S	1.190	1.00
380_I	406_A	1.190	1.00
141_A	144_S	1.185	1.00
90_E	185_Y	1.178	1.00
82_L	96_A	1.176	1.00
377_L	406_A	1.168	0.99
227_L	257_I	1.168	0.99
90_E	182_D	1.163	0.99
88_G	92_Q	1.153	0.99
361_K	364_G	1.152	0.99
348_R	352_A	1.149	0.99
134_P	219_Q	1.144	0.99
80_V	96_A	1.144	0.99
394_T	409_V	1.142	0.99
26_T	174_W	1.141	0.99
63_H	175_I	1.141	0.99
348_R	351_R	1.141	0.99
205_F	209_T	1.141	0.99
87_L	95_Q	1.139	0.99
46_A	75_L	1.136	0.99
26_T	63_H	1.135	0.99
396_L	406_A	1.134	0.99
161_G	199_Q	1.132	0.99
300_I	309_W	1.130	0.99
258_I	278_I	1.128	0.99
132_S	136_G	1.122	0.99
118_D	199_Q	1.121	0.99
65_E	77_V	1.116	0.99
34_Q	170_Y	1.116	0.99
121_C	206_A	1.114	0.99
230_D	249_M	1.110	0.99
204_H	208_A	1.100	0.99
399_Y	404_I	1.099	0.99
78_E	100_A	1.095	0.99
117_L	206_A	1.091	0.99
116_H	163_L	1.091	0.99
89_I	185_Y	1.090	0.99
242_Q	305_S	1.082	0.99
215_L	219_Q	1.080	0.99
54_S	60_W	1.080	0.99
360_F	395_P	1.077	0.99
223_L	256_A	1.072	0.99
380_I	409_V	1.072	0.99
361_K	378_K	1.072	0.99
243_I	302_R	1.054	0.99
367_H	374_G	1.053	0.99
194_V	198_L	1.050	0.99
49_V	100_A	1.049	0.99
166_W	170_Y	1.048	0.99
155_L	158_R	1.038	0.99
164_V	176_E	1.037	0.99
52_G	58_D	1.037	0.99
59_A	178_E	1.036	0.99
144_S	149_T	1.036	0.99
59_A	62_T	1.036	0.99
117_L	159_T	1.036	0.99
208_A	211_R	1.032	0.99
138_S	141_A	1.025	0.99
17_V	44_L	1.024	0.99
278_I	300_I	1.024	0.99
142_E	157_A	1.024	0.99
82_L	92_Q	1.023	0.99
330_L	333_P	1.022	0.99
292_C	299_E	1.022	0.99
193_R	200_Q	1.022	0.99
23_L	174_W	1.016	0.99
31_Q	158_R	1.013	0.99
161_G	165_Q	1.012	0.99
304_Q	385_G	1.008	0.98
124_F	132_S	1.002	0.98
103_R	107_P	0.998	0.98
110_V	152_I	0.997	0.98
277_R	281_E	0.996	0.98
87_L	92_Q	0.994	0.98
395_P	407_A	0.990	0.98
23_L	160_R	0.987	0.98
124_F	128_L	0.986	0.98
14_Q	109_E	0.978	0.98
289_A	294_R	0.976	0.98
379_K	383_E	0.974	0.98
204_H	207_E	0.970	0.98
194_V	202_W	0.969	0.98
365_L	369_V	0.965	0.98
66_N	69_Q	0.963	0.98
96_A	99_Q	0.961	0.98
116_H	160_R	0.961	0.98
99_Q	103_R	0.960	0.98
249_M	257_I	0.959	0.98
221_S	250_S	0.958	0.98
359_R	365_L	0.957	0.98
274_A	294_R	0.956	0.98
32_L	44_L	0.952	0.98
299_E	310_I	0.952	0.98
102_A	150_R	0.948	0.98
33_V	36_R	0.948	0.98
333_P	336_L	0.947	0.98
64_C	75_L	0.946	0.98
27_V	163_L	0.943	0.98
121_C	210_A	0.942	0.98
198_L	202_W	0.942	0.98
48_H	61_V	0.941	0.98
16_L	76_V	0.937	0.98
246_M	254_R	0.936	0.98
159_T	206_A	0.934	0.97
365_L	370_G	0.931	0.97
219_Q	223_L	0.924	0.97
63_H	174_W	0.920	0.97
113_T	140_M	0.918	0.97
347_I	404_I	0.918	0.97
230_D	234_C	0.918	0.97
384_L	410_F	0.915	0.97
332_L	335_G	0.914	0.97
368_I	371_R	0.913	0.97
198_L	205_F	0.910	0.97
29_L	44_L	0.908	0.97
229_D	233_H	0.907	0.97
129_K	209_T	0.905	0.97
47_I	78_E	0.900	0.97
35_W	42_V	0.897	0.97
387_P	390_L	0.896	0.97
46_A	64_C	0.890	0.97
206_A	210_A	0.889	0.97
194_V	197_L	0.889	0.97
36_R	42_V	0.888	0.97
366_L	370_G	0.884	0.96
251_D	254_R	0.883	0.96
179_S	182_D	0.880	0.96
90_E	184_S	0.879	0.96
361_K	396_L	0.870	0.96
125_L	190_L	0.865	0.96
227_L	260_R	0.864	0.96
132_S	212_S	0.864	0.96
78_E	104_T	0.864	0.96
210_A	213_A	0.863	0.96
17_V	46_A	0.863	0.96
179_S	188_N	0.857	0.96
380_I	410_F	0.856	0.96
182_D	185_Y	0.853	0.96
211_R	215_L	0.849	0.96
76_V	104_T	0.849	0.96
333_P	337_G	0.849	0.96
16_L	108_G	0.848	0.96
89_I	93_A	0.846	0.95
255_A	276_V	0.845	0.95
199_Q	205_F	0.839	0.95
380_I	384_L	0.825	0.95
189_F	192_L	0.822	0.95
26_T	64_C	0.821	0.95
354_E	399_Y	0.820	0.95
224_D	260_R	0.819	0.95
301_R	310_I	0.817	0.95
195_V	209_T	0.816	0.95
15_I	152_I	0.816	0.95
352_A	399_Y	0.816	0.95
56_N	59_A	0.815	0.94
125_L	213_A	0.814	0.94
226_L	230_D	0.812	0.94
126_L	190_L	0.811	0.94
274_A	277_R	0.810	0.94
357_S	398_F	0.808	0.94
26_T	71_W	0.805	0.94
302_R	305_S	0.804	0.94
15_I	32_L	0.803	0.94
234_C	245_P	0.802	0.94
347_I	350_P	0.802	0.94
182_D	192_L	0.797	0.94
197_L	201_R	0.794	0.94
205_F	208_A	0.794	0.94
127_A	132_S	0.792	0.94
140_M	156_L	0.791	0.94
352_A	355_A	0.791	0.94
260_R	264_G	0.786	0.93
332_L	337_G	0.784	0.93
102_A	149_T	0.782	0.93
186_D	189_F	0.781	0.93
15_I	110_V	0.778	0.93
30_H	33_V	0.776	0.93
277_R	280_Q	0.776	0.93
57_A	61_V	0.774	0.93
160_R	163_L	0.774	0.93
252_A	256_A	0.772	0.93
394_T	407_A	0.771	0.93
140_M	144_S	0.771	0.93
356_V	404_I	0.767	0.92
50_H	178_E	0.767	0.92
45_R	74_P	0.764	0.92
390_L	393_T	0.763	0.92
124_F	137_L	0.761	0.92
28_L	32_L	0.755	0.92
218_E	251_D	0.750	0.92
298_F	309_W	0.749	0.92
63_H	67_V	0.749	0.92
197_L	200_Q	0.744	0.91
80_V	100_A	0.742	0.91
21_G	64_C	0.740	0.91
101_F	113_T	0.738	0.91
365_L	371_R	0.737	0.91
358_V	395_P	0.735	0.91
158_R	163_L	0.735	0.91
405_A	408_G	0.734	0.91
220_E	223_L	0.733	0.91
170_Y	173_R	0.730	0.91
241_L	261_W	0.727	0.90
48_H	75_L	0.725	0.90
384_L	409_V	0.725	0.90
67_V	70_Q	0.725	0.90
101_F	105_L	0.723	0.90
19_F	63_H	0.723	0.90
262_L	267_A	0.723	0.90
356_V	399_Y	0.723	0.90
271_S	274_A	0.721	0.90
227_L	256_A	0.719	0.90
303_Y	389_W	0.718	0.90
262_L	270_P	0.718	0.90
186_D	201_R	0.718	0.90
27_V	172_L	0.718	0.90
124_F	216_C	0.717	0.90
111_L	151_L	0.715	0.90
168_R	174_W	0.711	0.89
138_S	217_A	0.711	0.89
227_L	230_D	0.710	0.89
242_Q	306_Q	0.709	0.89
118_D	161_G	0.709	0.89
228_A	232_A	0.708	0.89
105_L	150_R	0.707	0.89
361_K	377_L	0.705	0.89
120_Q	156_L	0.705	0.89
229_D	232_A	0.700	0.89
87_L	91_A	0.698	0.88
243_I	307_L	0.698	0.88
27_V	155_L	0.697	0.88
386_V	391_R	0.697	0.88
92_Q	96_A	0.694	0.88
18_A	98_Y	0.691	0.88
256_A	260_R	0.688	0.88
376_K	379_K	0.687	0.88
36_R	40_P	0.686	0.88
382_Q	385_G	0.686	0.88
288_D	293_L	0.685	0.88
179_S	184_S	0.685	0.88
22_G	25_S	0.684	0.87
52_G	82_L	0.683	0.87
125_L	195_V	0.682	0.87
116_H	155_L	0.682	0.87
56_N	60_W	0.681	0.87
120_Q	127_A	0.680	0.87
18_A	57_A	0.680	0.87
304_Q	391_R	0.679	0.87
101_F	111_L	0.679	0.87
60_W	64_C	0.679	0.87
323_W	330_L	0.678	0.87
223_L	227_L	0.676	0.87
231_L	260_R	0.676	0.87
118_D	160_R	0.676	0.87
276_V	280_Q	0.675	0.87
27_V	30_H	0.675	0.87
20_S	24_D	0.674	0.87
376_K	382_Q	0.672	0.87
29_L	67_V	0.672	0.87
349_P	352_A	0.671	0.86
347_I	411_V	0.671	0.86
61_V	75_L	0.670	0.86
366_L	369_V	0.669	0.86
129_K	194_V	0.669	0.86
357_S	401_E	0.665	0.86
183_D	189_F	0.664	0.86
249_M	253_R	0.663	0.86
141_A	217_A	0.663	0.86
219_Q	252_A	0.663	0.86
360_F	396_L	0.661	0.86
117_L	207_E	0.660	0.86
48_H	60_W	0.658	0.85
338_S	341_L	0.657	0.85
370_G	373_G	0.656	0.85
129_K	205_F	0.656	0.85
386_V	409_V	0.656	0.85
405_A	411_V	0.656	0.85
367_H	413_Q	0.656	0.85
98_Y	151_L	0.654	0.85
189_F	197_L	0.654	0.85
20_S	25_S	0.652	0.85
102_A	111_L	0.652	0.85
26_T	173_R	0.652	0.85
260_R	263_A	0.651	0.85
214_A	272_R	0.650	0.85
287_E	304_Q	0.648	0.85
280_Q	284_L	0.647	0.84
138_S	216_C	0.647	0.84
299_E	312_S	0.646	0.84
381_W	406_A	0.646	0.84
381_W	396_L	0.644	0.84
32_L	36_R	0.643	0.84
297_A	312_S	0.642	0.84
253_R	256_A	0.641	0.84
386_V	394_T	0.640	0.84
36_R	41_G	0.640	0.84
251_D	255_A	0.638	0.84
354_E	400_G	0.637	0.84
138_S	220_E	0.637	0.84
14_Q	108_G	0.637	0.84
17_V	29_L	0.635	0.83
323_W	328_Q	0.635	0.83
250_S	253_R	0.635	0.83
223_L	226_L	0.633	0.83
133_G	137_L	0.630	0.83
291_P	294_R	0.629	0.83
279_W	283_A	0.629	0.83
80_V	92_Q	0.627	0.83
127_A	212_S	0.626	0.82
19_F	29_L	0.624	0.82
133_G	215_L	0.623	0.82
29_L	73_V	0.621	0.82
281_E	291_P	0.620	0.82
352_A	404_I	0.617	0.82
105_L	108_G	0.617	0.82
120_Q	139_A	0.617	0.82
121_C	124_F	0.615	0.81
230_D	256_A	0.614	0.81
67_V	172_L	0.611	0.81
234_C	242_Q	0.611	0.81
381_W	395_P	0.609	0.81
361_K	382_Q	0.608	0.81
165_Q	168_R	0.606	0.80
227_L	253_R	0.606	0.80
105_L	109_E	0.605	0.80
224_D	227_L	0.603	0.80
124_F	212_S	0.602	0.80
347_I	352_A	0.602	0.80
155_L	163_L	0.600	0.80
179_S	185_Y	0.599	0.80
34_Q	166_W	0.598	0.80
373_G	383_E	0.598	0.80
245_P	248_A	0.596	0.79
82_L	88_G	0.596	0.79
255_A	279_W	0.595	0.79
243_I	247_L	0.595	0.79
58_D	62_T	0.594	0.79
98_Y	144_S	0.594	0.79
19_F	75_L	0.594	0.79
129_K	190_L	0.593	0.79
63_H	173_R	0.593	0.79
55_A	175_I	0.593	0.79
272_R	276_V	0.591	0.79
402_T	412_T	0.591	0.79
54_S	57_A	0.590	0.79
366_L	412_T	0.588	0.78
405_A	410_F	0.588	0.78
336_L	341_L	0.588	0.78
222_L	250_S	0.587	0.78
258_I	279_W	0.587	0.78
121_C	205_F	0.587	0.78
49_V	96_A	0.584	0.78
273_D	277_R	0.581	0.78
30_H	167_A	0.580	0.77
135_A	224_D	0.580	0.77
63_H	172_L	0.579	0.77
27_V	170_Y	0.579	0.77
227_L	231_L	0.579	0.77
49_V	101_F	0.579	0.77
186_D	190_L	0.578	0.77
26_T	167_A	0.577	0.77
104_T	107_P	0.577	0.77
367_H	370_G	0.577	0.77
45_R	109_E	0.576	0.77
21_G	24_D	0.575	0.77
301_R	389_W	0.574	0.77
327_L	330_L	0.572	0.76
121_C	125_L	0.570	0.76
129_K	201_R	0.569	0.76
371_R	379_K	0.568	0.76
251_D	276_V	0.567	0.76
137_L	216_C	0.567	0.76
27_V	116_H	0.567	0.76
406_A	409_V	0.567	0.76
93_A	101_F	0.564	0.75
334_A	337_G	0.563	0.75
397_L	407_A	0.562	0.75
98_Y	153_R	0.562	0.75
261_W	309_W	0.561	0.75
128_L	216_C	0.558	0.75
398_F	404_I	0.555	0.74
21_G	25_S	0.554	0.74
353_D	400_G	0.553	0.74
226_L	253_R	0.553	0.74
16_L	101_F	0.552	0.74
189_F	198_L	0.549	0.74
16_L	105_L	0.548	0.73
124_F	210_A	0.548	0.73
194_V	201_R	0.548	0.73
53_L	88_G	0.546	0.73
366_L	377_L	0.544	0.73
189_F	200_Q	0.544	0.73
342_N	345_G	0.543	0.73
52_G	80_V	0.542	0.73
53_L	90_E	0.542	0.73
133_G	259_R	0.541	0.72
233_H	245_P	0.541	0.72
82_L	93_A	0.539	0.72
208_A	216_C	0.538	0.72
166_W	172_L	0.537	0.72
304_Q	383_E	0.535	0.72
26_T	30_H	0.533	0.71
144_S	254_R	0.533	0.71
236_S	240_T	0.533	0.71
78_E	101_F	0.531	0.71
55_A	178_E	0.531	0.71
33_V	172_L	0.530	0.71
244_V	247_L	0.529	0.71
261_W	265_Q	0.529	0.71
218_E	252_A	0.528	0.71
23_L	60_W	0.527	0.70
222_L	227_L	0.525	0.70
60_W	63_H	0.525	0.70
331_E	334_A	0.522	0.70
289_A	292_C	0.521	0.70
19_F	90_E	0.521	0.70
254_R	283_A	0.521	0.70
57_A	93_A	0.519	0.69
55_A	59_A	0.519	0.69
167_A	176_E	0.519	0.69
60_W	179_S	0.518	0.69
164_V	174_W	0.518	0.69
30_H	67_V	0.517	0.69
236_S	242_Q	0.517	0.69
359_R	364_G	0.516	0.69
51_H	100_A	0.516	0.69
231_L	261_W	0.515	0.69
190_L	195_V	0.514	0.69
162_E	165_Q	0.511	0.68
304_Q	382_Q	0.511	0.68
80_V	93_A	0.511	0.68
43_A	74_P	0.511	0.68
359_R	385_G	0.510	0.68
330_L	335_G	0.508	0.68
366_L	371_R	0.508	0.68
214_A	217_A	0.508	0.68
282_V	307_L	0.508	0.68
395_P	398_F	0.507	0.68
298_F	311_K	0.505	0.67
214_A	218_E	0.505	0.67
290_S	293_L	0.505	0.67
353_D	399_Y	0.504	0.67
18_A	151_L	0.503	0.67
246_M	307_L	0.503	0.67
117_L	120_Q	0.503	0.67
111_L	149_T	0.501	0.67
18_A	76_V	0.500	0.67
96_A	127_A	0.500	0.67
190_L	205_F	0.500	0.67

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3a2kA	1	0.9907	100	0.214	Contact Map
1ni5A	2	0.9931	100	0.232	Contact Map
1wy5A	4	0.6759	100	0.432	Contact Map
3vrhA	2	0.5787	100	0.64	Contact Map
2vxoA	2	0.6875	100	0.733	Contact Map
3rjzA	2	0.4653	100	0.735	Contact Map
3uowA	2	0.5949	100	0.737	Contact Map
2dplA	2	0.5741	100	0.741	Contact Map
3k32A	2	0.4259	100	0.742	Contact Map
1surA	2	0.3889	100	0.747	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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