GREMLIN Database
YHCD - Uncharacterized outer membrane usher protein YhcD
UniProt: P45420 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12810
Length: 793 (723)
Sequences: 2710 (2055)
Seq/√Len: 76.4

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
85_C106_C4.9481.00
593_S609_T4.4551.00
226_E240_Y4.4041.00
304_N316_N4.2621.00
730_V762_I4.1901.00
624_S662_V4.1481.00
633_A666_I4.1371.00
159_L176_A4.0731.00
268_A309_E4.0421.00
332_Q358_W3.9851.00
239_I351_V3.9111.00
714_A754_I3.8821.00
468_G493_W3.8801.00
332_Q356_S3.7701.00
108_D111_L3.6971.00
259_V272_I3.6821.00
595_A607_N3.6371.00
636_K705_G3.5061.00
308_V314_S3.4851.00
614_I623_F3.4391.00
269_R308_V3.3491.00
616_V621_V3.3081.00
306_T314_S3.2861.00
186_D213_R3.2391.00
264_N313_S3.1401.00
59_E75_A3.1111.00
732_I749_V3.0791.00
471_N492_N3.0441.00
273_R278_L3.0121.00
495_K502_V2.9901.00
62_L78_F2.9671.00
758_M773_L2.8991.00
718_I771_I2.8801.00
508_H521_D2.8701.00
732_I760_L2.8031.00
62_L120_P2.7781.00
759_V770_R2.7591.00
539_L550_Y2.7501.00
336_F354_A2.7491.00
307_V315_H2.7481.00
181_G190_R2.7201.00
632_F701_V2.7171.00
65_S126_A2.6961.00
159_L174_S2.6851.00
592_V610_M2.6501.00
271_E278_L2.6421.00
494_N503_S2.6321.00
189_L211_L2.5861.00
264_N315_H2.5651.00
189_L209_T2.5431.00
732_I762_I2.5251.00
161_S174_S2.4231.00
121_L124_Q2.4211.00
636_K703_K2.4191.00
394_S413_R2.3941.00
567_N582_S2.3891.00
227_V239_I2.3891.00
119_T128_D2.3721.00
193_Q204_N2.3621.00
590_T610_M2.3491.00
718_I762_I2.3191.00
622_T656_D2.3071.00
78_F84_I2.3061.00
150_G634_I2.2981.00
151_T182_I2.2931.00
734_D738_N2.2621.00
617_H622_T2.2601.00
118_I129_I2.2571.00
152_A701_V2.2501.00
476_K487_S2.2431.00
59_E77_R2.2391.00
273_R304_N2.2391.00
260_T290_T2.2361.00
614_I621_V2.2181.00
472_I491_I2.1901.00
215_F218_L2.1831.00
182_I189_L2.1431.00
61_S75_A2.1401.00
720_L726_L2.1231.00
271_E308_V2.1181.00
400_S443_A2.1101.00
633_A674_V2.1091.00
163_R172_D2.0901.00
157_Y612_G2.0851.00
613_G624_S2.0741.00
223_R245_A2.0721.00
155_L180_G2.0681.00
505_N524_Y2.0551.00
759_V772_H2.0521.00
113_Y116_T2.0431.00
672_S696_Q2.0281.00
109_Y116_T2.0271.00
500_A527_I2.0231.00
613_G628_I2.0121.00
248_N333_G2.0021.00
273_R306_T2.0011.00
637_M641_I1.9811.00
569_E580_N1.9331.00
411_K431_T1.9281.00
153_A182_I1.9181.00
97_K100_S1.9141.00
618_D703_K1.9111.00
223_R227_V1.9101.00
507_Q522_L1.8951.00
619_Q703_K1.8951.00
718_I749_V1.8751.00
397_I410_Q1.8601.00
367_N394_S1.8561.00
583_I594_L1.8531.00
270_V307_V1.8501.00
671_T693_M1.8301.00
263_A284_V1.8261.00
634_I660_N1.8171.00
726_L762_I1.8161.00
539_L552_T1.8141.00
503_S526_N1.7901.00
760_L771_I1.7881.00
504_V525_V1.7841.00
121_L128_D1.7461.00
617_H660_N1.7381.00
239_I337_A1.7351.00
628_I632_F1.7351.00
272_I291_I1.7291.00
55_F122_P1.7281.00
720_L724_K1.7241.00
214_T669_W1.7211.00
65_S128_D1.7191.00
304_N318_I1.7171.00
87_D90_F1.7101.00
212_Q221_L1.7051.00
188_M697_G1.7011.00
587_L592_V1.6981.00
234_L369_G1.6971.00
541_T548_T1.6841.00
65_S70_K1.6791.00
191_S206_N1.6781.00
252_T670_R1.6751.00
215_F244_I1.6671.00
378_A396_Q1.6661.00
79_D82_G1.6531.00
467_L493_W1.6491.00
712_R756_P1.6431.00
240_Y342_D1.6411.00
306_T316_N1.6391.00
684_N712_R1.6361.00
340_R350_W1.6351.00
718_I726_L1.6311.00
630_D698_R1.6281.00
66_V137_I1.6241.00
619_Q636_K1.6241.00
476_K485_D1.6211.00
364_S385_L1.6081.00
220_T334_Y1.6061.00
63_I73_N1.6051.00
239_I243_E1.5991.00
191_S209_T1.5981.00
214_T221_L1.5870.99
637_M708_A1.5830.99
393_V414_L1.5830.99
399_T406_S1.5680.99
307_V317_Y1.5610.99
359_N365_A1.5540.99
305_V317_Y1.5540.99
249_A698_R1.5460.99
213_R222_M1.5440.99
371_I440_L1.5420.99
271_E281_S1.5400.99
644_V655_T1.5280.99
227_V337_A1.5240.99
559_S563_S1.5190.99
411_K433_S1.5090.99
148_T216_T1.5030.99
248_N331_F1.5010.99
195_L202_F1.5010.99
360_L366_M1.4990.99
543_H547_K1.4980.99
269_R281_S1.4980.99
153_A616_V1.4960.99
367_N382_R1.4940.99
591_Q611_S1.4860.99
613_G632_F1.4710.99
64_V76_T1.4700.99
224_A242_I1.4660.99
719_T725_K1.4640.99
581_G596_A1.4620.99
598_A604_R1.4550.99
244_I336_F1.4350.99
688_G707_S1.4340.99
243_E335_R1.4290.99
233_V380_S1.4280.99
154_L632_F1.4260.99
730_V764_D1.4260.99
497_F502_V1.4200.99
305_V319_V1.4110.99
158_S611_S1.4060.99
319_V327_H1.4020.99
717_N748_V1.4020.99
235_E439_E1.3950.99
259_V303_L1.3900.99
88_Q92_Q1.3900.99
500_A529_I1.3860.99
335_R355_S1.3820.99
538_T553_G1.3770.99
154_L701_V1.3730.98
377_Q399_T1.3620.98
214_T697_G1.3590.98
150_G703_K1.3560.98
506_W523_F1.3540.98
90_F94_A1.3480.98
389_P416_A1.3460.98
636_K660_N1.3450.98
587_L590_T1.3450.98
340_R348_S1.3390.98
120_P127_L1.3390.98
247_D698_R1.3340.98
615_A632_F1.3330.98
455_T477_T1.3140.98
553_G567_N1.3080.98
646_I663_I1.3070.98
271_E306_T1.3020.98
761_D770_R1.2960.98
215_F222_M1.2920.98
187_W213_R1.2740.98
468_G495_K1.2710.97
506_W521_D1.2700.97
180_G191_S1.2690.97
732_I751_L1.2690.97
411_K480_Y1.2660.97
156_N179_E1.2640.97
302_D318_I1.2560.97
716_L749_V1.2530.97
716_L771_I1.2330.97
237_A371_I1.2320.97
291_I294_V1.2300.97
268_A311_D1.2250.97
458_L472_I1.2250.97
151_T184_I1.2220.97
645_R680_S1.2210.97
615_A634_I1.2210.97
276_G304_N1.2170.97
165_E604_R1.2140.97
272_I282_I1.2090.97
718_I743_S1.2040.97
151_T701_V1.2030.97
714_A775_F1.2030.97
161_S608_G1.1980.96
716_L751_L1.1960.96
637_M640_N1.1910.96
364_S383_S1.1850.96
655_T659_G1.1800.96
427_T457_A1.1790.96
502_V525_V1.1790.96
338_I350_W1.1780.96
63_I70_K1.1680.96
192_H208_S1.1680.96
258_Q290_T1.1680.96
89_A93_Q1.1680.96
696_Q702_G1.1660.96
130_I286_A1.1660.96
120_P125_E1.1550.96
240_Y340_R1.1530.96
403_T407_L1.1490.95
504_V523_F1.1440.95
454_S478_Y1.1440.95
757_D774_T1.1370.95
453_K480_Y1.1300.95
267_Q309_E1.1210.95
68_G128_D1.1210.95
395_S412_Y1.1170.95
64_V74_I1.1160.95
586_N591_Q1.1090.94
374_E545_D1.1080.94
151_T618_D1.1070.94
130_I285_P1.1000.94
499_H533_R1.0970.94
473_S490_N1.0940.94
622_T658_R1.0930.94
399_T408_Q1.0900.94
154_L181_G1.0890.94
424_L460_L1.0880.94
66_V71_K1.0870.94
294_V297_R1.0870.94
359_N389_P1.0870.94
148_T186_D1.0790.94
76_T127_L1.0760.94
564_Y568_A1.0750.94
731_A739_Y1.0730.93
47_H50_S1.0700.93
226_E342_D1.0680.93
183_N190_R1.0590.93
145_N671_T1.0570.93
582_S595_A1.0560.93
697_G700_A1.0520.93
269_R283_L1.0510.93
761_D768_S1.0510.93
341_V444_I1.0500.93
76_T84_I1.0490.93
464_N467_L1.0400.92
272_I280_H1.0360.92
243_E337_A1.0330.92
571_D578_S1.0330.92
131_V137_I1.0270.92
137_I285_P1.0250.92
537_A554_V1.0240.92
352_I372_V1.0230.92
116_T131_V1.0220.92
615_A701_V1.0210.92
422_F462_W1.0200.92
727_P730_V1.0190.92
544_D547_K1.0160.91
613_G662_V1.0160.91
537_A552_T1.0150.91
302_D320_P1.0140.91
642_A657_F1.0110.91
677_D680_S1.0080.91
622_T660_N1.0050.91
510_L519_D1.0040.91
419_N423_S1.0020.91
637_M644_V1.0000.91
245_A335_R0.9910.90
541_T550_Y0.9900.90
543_H548_T0.9900.90
439_E442_E0.9870.90
762_I771_I0.9870.90
535_N554_V0.9860.90
617_H620_G0.9860.90
424_L432_R0.9850.90
256_G329_E0.9830.90
572_H577_T0.9820.90
187_W211_L0.9810.90
91_L96_L0.9800.90
558_V566_V0.9800.90
553_G580_N0.9800.90
586_N625_P0.9790.90
227_V243_E0.9730.90
692_K704_V0.9730.90
655_T713_R0.9720.90
294_V329_E0.9700.89
222_M244_I0.9680.89
150_G618_D0.9670.89
615_A662_V0.9670.89
150_G701_V0.9660.89
64_V83_D0.9650.89
246_P334_Y0.9620.89
487_S510_L0.9590.89
755_K758_M0.9590.89
733_E763_K0.9560.89
401_Q406_S0.9560.89
117_T130_I0.9550.89
74_I93_Q0.9540.89
410_Q434_D0.9520.89
560_D563_S0.9520.89
188_M700_A0.9500.88
161_S172_D0.9490.88
727_P764_D0.9470.88
622_T634_I0.9460.88
183_N187_W0.9460.88
688_G709_I0.9450.88
261_G289_F0.9440.88
673_G691_T0.9350.88
147_A150_G0.9340.88
46_S50_S0.9340.88
584_S591_Q0.9330.88
206_N226_E0.9320.87
635_A646_I0.9310.87
186_D697_G0.9310.87
764_D768_S0.9310.87
564_Y585_S0.9280.87
154_L613_G0.9220.87
188_M699_G0.9200.87
590_T624_S0.9200.87
179_E192_H0.9190.87
63_I126_A0.9170.87
338_I352_I0.9160.87
322_T327_H0.9160.87
470_F493_W0.9140.86
722_D725_K0.9130.86
228_N238_S0.9130.86
568_A579_L0.9090.86
559_S562_M0.9090.86
666_I670_R0.9080.86
325_N351_V0.9060.86
328_V356_S0.9050.86
327_H359_N0.9030.86
351_V440_L0.9000.86
635_A648_S0.8990.86
185_N213_R0.8950.85
619_Q623_F0.8930.85
392_T415_D0.8930.85
254_G297_R0.8900.85
76_T272_I0.8890.85
113_Y136_I0.8890.85
712_R776_P0.8880.85
309_E313_S0.8880.85
689_N692_K0.8850.85
45_I49_F0.8850.85
289_F309_E0.8850.85
91_L129_I0.8840.85
579_L598_A0.8780.84
80_E83_D0.8760.84
635_A663_I0.8760.84
197_Q202_F0.8760.84
103_K458_L0.8750.84
301_S359_N0.8700.84
726_L764_D0.8660.83
685_V710_T0.8650.83
625_P651_G0.8650.83
641_I708_A0.8650.83
229_L239_I0.8640.83
243_E252_T0.8640.83
330_S359_N0.8630.83
461_N471_N0.8630.83
251_Q359_N0.8610.83
647_T675_E0.8590.83
757_D772_H0.8590.83
324_F333_G0.8570.83
232_S437_Y0.8560.83
351_V371_I0.8560.83
714_A753_N0.8560.83
430_L456_Y0.8540.82
442_E445_D0.8530.82
325_N417_N0.8510.82
156_N632_F0.8480.82
328_V365_A0.8470.82
328_V332_Q0.8460.82
613_G616_V0.8450.82
68_G589_Y0.8440.82
682_P685_V0.8430.82
218_L244_I0.8420.82
776_P779_A0.8410.82
694_I702_G0.8410.82
282_I291_I0.8410.82
267_Q286_A0.8390.81
464_N468_G0.8380.81
45_I48_Y0.8380.81
653_V664_P0.8370.81
633_A702_G0.8310.81
137_I242_I0.8290.81
207_S342_D0.8280.80
191_S204_N0.8270.80
615_A628_I0.8250.80
643_G654_W0.8250.80
440_L444_I0.8230.80
403_T446_D0.8190.80
98_I527_I0.8170.80
341_V440_L0.8170.80
509_Q522_L0.8160.80
360_L383_S0.8150.79
638_D705_G0.8150.79
211_L224_A0.8140.79
135_A290_T0.8130.79
566_V570_R0.8130.79
559_S564_Y0.8130.79
656_D659_G0.8120.79
758_M775_F0.8120.79
365_A389_P0.8120.79
407_L436_H0.8080.79
307_V319_V0.8060.79
220_T244_I0.8050.79
578_S604_R0.8050.79
79_D83_D0.8040.79
508_H519_D0.8030.78
328_V357_G0.7990.78
378_A437_Y0.7980.78
264_N309_E0.7980.78
540_Y551_G0.7960.78
740_L751_L0.7940.78
630_D668_P0.7920.77
407_L438_R0.7920.77
743_S749_V0.7910.77
261_G612_G0.7910.77
337_A353_S0.7900.77
148_T697_G0.7850.77
298_N451_P0.7850.77
389_P696_Q0.7850.77
257_V261_G0.7840.77
138_P687_I0.7830.77
219_K248_N0.7820.77
744_V748_V0.7800.76
410_Q414_L0.7780.76
540_Y608_G0.7770.76
152_A183_N0.7750.76
426_L532_G0.7730.76
424_L462_W0.7720.76
210_Y699_G0.7720.76
634_I701_V0.7720.76
148_T214_T0.7700.75
629_N668_P0.7690.75
270_V284_V0.7680.75
129_I722_D0.7680.75
118_I555_M0.7660.75
562_M585_S0.7660.75
570_R751_L0.7660.75
735_S759_V0.7640.75
109_Y113_Y0.7630.75
157_Y261_G0.7620.75
711_Q753_N0.7600.75
471_N494_N0.7590.74
206_N209_T0.7590.74
224_A227_V0.7580.74
576_E601_S0.7570.74
129_I436_H0.7570.74
84_I90_F0.7550.74
368_G380_S0.7540.74
401_Q405_D0.7540.74
477_T486_S0.7540.74
257_V359_N0.7520.74
464_N493_W0.7480.73
756_P777_E0.7470.73
48_Y51_R0.7440.73
596_A604_R0.7420.73
428_T458_L0.7410.73
84_I127_L0.7410.73
757_D773_L0.7400.73
257_V263_A0.7400.73
163_R170_S0.7400.73
411_K434_D0.7400.73
74_I129_I0.7390.72
637_M655_T0.7380.72
61_S272_I0.7380.72
255_S329_E0.7370.72
734_D740_L0.7370.72
474_G487_S0.7350.72
641_I685_V0.7350.72
578_S597_G0.7330.72
115_G426_L0.7330.72
245_A776_P0.7320.72
214_T217_D0.7300.72
719_T724_K0.7270.71
85_C319_V0.7270.71
337_A351_V0.7270.71
554_V558_V0.7270.71
645_R677_D0.7260.71
726_L747_G0.7260.71
217_D472_I0.7260.71
71_K94_A0.7240.71
162_S605_T0.7220.71
328_V331_F0.7220.71
354_A615_A0.7210.71
139_I295_P0.7210.71
257_V389_P0.7200.70
634_I703_K0.7200.70
622_T662_V0.7190.70
459_G473_S0.7190.70
333_G357_G0.7190.70
719_T723_G0.7170.70
722_D726_L0.7160.70
94_A137_I0.7160.70
91_L94_A0.7150.70
62_L76_T0.7150.70
633_A663_I0.7140.70
411_K753_N0.7140.70
273_R276_G0.7130.70
754_I758_M0.7120.70
222_M391_L0.7120.70
366_M773_L0.7110.70
431_T480_Y0.7110.70
83_D111_L0.7090.69
529_I537_A0.7090.69
661_A664_P0.7080.69
714_A773_L0.7070.69
542_R551_G0.7070.69
497_F500_A0.7060.69
328_V359_N0.7060.69
233_V357_G0.7050.69
223_R243_E0.7040.69
175_Q194_F0.7040.69
270_V289_F0.7040.69
220_T246_P0.7030.69
178_L193_Q0.7030.69
537_A553_G0.7030.69
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366_M567_N0.5330.48
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75_A721_S0.5310.48
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307_V455_T0.5300.48
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401_Q506_W0.5240.47
212_Q223_R0.5230.47
93_Q184_I0.5220.47
391_L446_D0.5220.47
183_N376_Y0.5220.47
430_L433_S0.5220.47
246_P418_Y0.5220.47
255_S317_Y0.5210.47
158_S646_I0.5210.47
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538_T554_V0.5210.47
64_V75_A0.5210.47
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333_G701_V0.5200.46
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464_N470_F0.5170.46
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261_G288_A0.5150.46
175_Q196_T0.5150.46
551_G567_N0.5140.46
318_I478_Y0.5140.46
384_S392_T0.5140.46
257_V329_E0.5130.46
398_S494_N0.5130.46
255_S389_P0.5130.46
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100_S200_G0.5120.45
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301_S417_N0.5100.45
497_F657_F0.5100.45
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550_Y610_M0.5100.45
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76_T734_D0.5090.45
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246_P628_I0.5090.45
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440_L443_A0.5080.45
408_Q481_D0.5080.45
680_S705_G0.5070.45
183_N700_A0.5070.45
522_L542_R0.5070.45
150_G615_A0.5070.45
153_A662_V0.5070.45
220_T224_A0.5070.45
563_S587_L0.5070.45
49_F53_A0.5060.45
561_E645_R0.5060.45
745_D752_N0.5060.45
267_Q283_L0.5050.45
340_R426_L0.5050.45
48_Y299_G0.5050.45
256_G730_V0.5050.45
723_G762_I0.5040.44
489_L632_F0.5040.44
88_Q155_L0.5040.44
297_R425_G0.5030.44
273_R316_N0.5030.44
71_K757_D0.5030.44
663_I674_V0.5030.44
121_L531_F0.5030.44
594_L606_Y0.5030.44
417_N427_T0.5030.44
85_C631_T0.5030.44
390_D744_V0.5020.44
460_L471_N0.5020.44
721_S759_V0.5020.44
49_F54_R0.5010.44
573_D614_I0.5010.44
189_L504_V0.5010.44
89_A777_E0.5010.44
146_A149_G0.5000.44
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3rfzB 2 0.9193 100 0.095 Contact Map
3fipA 1 0.5347 100 0.48 Contact Map
4b0mA 1 0.1463 99.9 0.86 Contact Map
3fcgA 2 0.0908 99.9 0.861 Contact Map
3bwuD 1 0.1387 99.8 0.867 Contact Map
2xetA 1 0.1034 99.6 0.898 Contact Map
3l48A 1 0.1059 99.4 0.905 Contact Map
4oq1A 1 0.2245 91.2 0.966 Contact Map
3e8vA 1 0.0921 91 0.966 Contact Map
3pguA 1 0.4149 89.5 0.967 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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