GREMLIN Database
YQJF - Inner membrane protein YqjF
UniProt: P42619 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12745
Length: 130 (118)
Sequences: 1386 (933)
Seq/√Len: 85.9

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
94_V98_M4.8891.00
21_I59_G2.8451.00
88_S91_A2.6201.00
9_V115_T2.4991.00
51_V55_E2.4831.00
19_L105_I2.4291.00
61_A71_T2.2011.00
60_L64_F2.1871.00
80_L84_F2.0731.00
12_A111_L1.9891.00
73_L113_A1.9441.00
89_N99_F1.8591.00
58_G71_T1.8421.00
45_G48_L1.8361.00
62_I112_L1.8031.00
96_S100_M1.7561.00
117_P123_D1.6461.00
10_L14_I1.6071.00
83_A102_N1.6021.00
54_L74_F1.6001.00
22_T96_S1.5761.00
111_L115_T1.5571.00
57_G61_A1.5391.00
83_A106_S1.5381.00
70_T74_F1.5241.00
76_A110_L1.4930.99
89_N92_E1.4910.99
77_G81_L1.4730.99
9_V111_L1.4640.99
31_Y52_I1.4570.99
28_I52_I1.4390.99
17_P21_I1.4260.99
12_A114_I1.3910.99
30_G33_G1.3720.99
68_T123_D1.3490.99
8_G113_A1.3470.99
21_I63_L1.3350.99
25_W56_F1.3150.99
62_I109_F1.3130.99
41_M44_P1.3050.99
83_A99_F1.2840.98
67_L70_T1.2770.98
73_L77_G1.2770.98
43_V49_P1.2110.98
43_V85_L1.2100.98
23_A78_F1.2060.98
100_M103_L1.1620.97
17_P104_T1.1580.97
27_K55_E1.1280.96
79_T106_S1.1280.96
22_T26_G1.1270.96
17_P59_G1.1140.96
17_P63_L1.1100.96
8_G114_I1.1060.96
90_F99_F1.0860.96
90_F96_S1.0850.96
80_L106_S1.0730.95
16_M105_I1.0640.95
83_A90_F1.0560.95
38_M43_V1.0510.95
24_G59_G1.0480.95
59_G63_L1.0480.95
36_Q39_E1.0220.94
68_T112_L1.0110.93
87_H102_N0.9950.93
95_N102_N0.9900.93
17_P62_I0.9830.93
109_F112_L0.9830.93
38_M52_I0.9810.92
112_L115_T0.9480.91
71_T74_F0.9480.91
46_F49_P0.9440.91
26_G100_M0.9390.91
51_V82_T0.9380.91
105_I108_G0.9370.91
52_I56_F0.9200.90
54_L58_G0.9160.90
25_W29_T0.9130.89
20_F79_T0.9010.89
6_D119_A0.9000.89
38_M86_F0.8980.89
55_E78_F0.8910.88
17_P23_A0.8800.88
84_F88_S0.8710.87
73_L81_L0.8650.87
66_F116_G0.8630.87
62_I108_G0.8630.87
53_L57_G0.8440.85
35_Q39_E0.8410.85
64_F74_F0.8410.85
19_L23_A0.8370.85
31_Y38_M0.8340.85
7_V120_Y0.8330.85
22_T100_M0.8250.84
75_T107_G0.8240.84
34_T55_E0.8130.83
51_V78_F0.7930.82
39_E45_G0.7740.80
31_Y49_P0.7720.80
27_K78_F0.7620.79
22_T33_G0.7540.78
62_I117_P0.7410.77
80_L103_L0.7390.77
87_H95_N0.7330.76
97_L100_M0.7280.76
76_A80_L0.7130.74
68_T72_A0.7070.74
23_A98_M0.7050.73
19_L22_T0.7000.73
75_T109_F0.7000.73
19_L104_T0.6980.73
92_E95_N0.6890.72
117_P121_S0.6750.70
8_G121_S0.6750.70
45_G49_P0.6710.70
98_M101_K0.6610.69
35_Q47_M0.6570.68
63_L111_L0.6550.68
26_G96_S0.6480.67
23_A100_M0.6450.67
110_L114_I0.6450.67
9_V112_L0.6400.66
27_K34_T0.6350.66
39_E73_L0.6310.65
78_F86_F0.6290.65
23_A94_V0.6280.65
50_L54_L0.6250.64
95_N98_M0.6170.63
54_L81_L0.6170.63
65_G79_T0.6130.63
61_A66_F0.6080.62
36_Q44_P0.5990.61
34_T38_M0.5970.61
60_L73_L0.5910.60
38_M51_V0.5860.59
118_G122_I0.5790.58
6_D67_L0.5740.58
71_T75_T0.5740.58
38_M49_P0.5730.58
100_M104_T0.5620.56
58_G75_T0.5620.56
23_A105_I0.5570.56
53_L58_G0.5550.55
114_I122_I0.5540.55
74_F123_D0.5520.55
50_L57_G0.5510.55
93_G98_M0.5500.55
80_L94_V0.5480.54
27_K102_N0.5480.54
69_R72_A0.5470.54
64_F120_Y0.5460.54
79_T105_I0.5440.54
79_T83_A0.5440.54
6_D14_I0.5430.54
94_V97_L0.5400.53
11_V77_G0.5390.53
34_T86_F0.5370.53
63_L110_L0.5370.53
38_M41_M0.5360.53
82_T87_H0.5340.52
82_T85_L0.5270.52
10_L112_L0.5270.52
87_H101_K0.5250.51
15_L103_L0.5240.51
24_G114_I0.5230.51
16_M108_G0.5220.51
27_K51_V0.5190.50
97_L102_N0.5180.50
63_L67_L0.5140.50
80_L85_L0.5120.50
41_M46_F0.5110.49
24_G67_L0.5090.49
14_I120_Y0.5080.49
23_A82_T0.5080.49
43_V46_F0.5050.49
35_Q77_G0.5010.48
24_G56_F0.5000.48
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2l9uA 2 0.2846 5.7 0.939 Contact Map
3cr3A 1 0.3 3.3 0.946 Contact Map
4ev6A 3 0.5 3.3 0.946 Contact Map
4i0uA 4 0.4846 3 0.947 Contact Map
2qvwA 3 0.3385 2.6 0.949 Contact Map
4wlrA 1 0.2538 1.8 0.953 Contact Map
5a63C 1 0.7615 1.7 0.954 Contact Map
2z0mA 1 0.2923 1.6 0.954 Contact Map
1xkpB 1 0.3154 1.5 0.955 Contact Map
2vgdA 1 0.2846 1.4 0.956 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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