GREMLIN Database
YGJQ - Uncharacterized protein YgjQ
UniProt: P42598 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12728
Length: 230 (187)
Sequences: 3538 (2825)
Seq/√Len: 206.6

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
84_Y122_V3.1931.00
94_V113_L3.0661.00
136_V164_A2.8271.00
58_R149_T2.6611.00
94_V123_I2.6551.00
79_T82_A2.6141.00
110_Q114_I2.5601.00
63_L80_A2.5301.00
104_D107_S2.5191.00
110_Q120_A2.4911.00
61_G89_V2.4521.00
81_A85_H2.3351.00
74_T78_D2.1801.00
78_D112_A2.1191.00
157_N173_G2.1121.00
61_G151_I2.0871.00
81_A113_L2.0761.00
84_Y119_P2.0151.00
130_F134_D1.9821.00
128_A138_R1.9431.00
62_L148_I1.9381.00
163_L198_A1.9181.00
93_L139_A1.9031.00
133_L137_V1.8971.00
91_W124_F1.8481.00
126_D135_S1.8481.00
152_S157_N1.8361.00
91_W122_V1.8211.00
110_Q125_C1.8121.00
136_V167_Y1.8091.00
161_I173_G1.8031.00
106_A125_C1.7701.00
161_I171_A1.7291.00
126_D129_G1.7251.00
114_I120_A1.7211.00
81_A116_K1.6941.00
129_G135_S1.6691.00
107_S127_Y1.6641.00
103_Y111_Q1.6481.00
94_V109_M1.6421.00
59_N147_H1.6321.00
79_T176_A1.5531.00
79_T174_F1.5531.00
83_L174_F1.5461.00
161_I165_K1.5361.00
77_I113_L1.5221.00
137_V141_K1.4451.00
143_F148_I1.4391.00
190_R194_A1.4301.00
131_S134_D1.4131.00
80_A113_L1.4021.00
92_L113_L1.3441.00
77_I112_A1.3331.00
126_D138_R1.3311.00
119_P122_V1.3111.00
95_S139_A1.3091.00
82_A86_A1.2791.00
107_S111_Q1.2731.00
157_N175_N1.2621.00
135_S139_A1.2481.00
62_L135_S1.2441.00
95_S129_G1.2321.00
70_N73_F1.2311.00
135_S138_R1.2281.00
80_A92_L1.2241.00
150_I164_A1.2151.00
77_I109_M1.2101.00
97_D105_E1.2081.00
66_A72_Y1.1991.00
133_L167_Y1.1851.00
73_F109_M1.1771.00
66_A73_F1.1721.00
136_V150_I1.1711.00
152_S160_A1.1581.00
94_V125_C1.1491.00
18_T21_I1.1471.00
77_I94_V1.1381.00
35_I39_V1.1261.00
84_Y92_L1.1241.00
138_R141_K1.1231.00
104_D127_Y1.1101.00
64_L160_A1.1091.00
107_S125_C1.1081.00
134_D138_R1.1031.00
64_L150_I1.1031.00
84_Y118_V1.1001.00
107_S110_Q1.0991.00
148_I169_I1.0921.00
60_V93_L1.0821.00
75_R176_A1.0641.00
62_L139_A1.0611.00
114_I123_I1.0611.00
111_Q114_I1.0601.00
32_T37_D1.0501.00
58_R172_I1.0341.00
33_I36_A1.0281.00
36_A39_V1.0211.00
99_G130_F1.0121.00
155_F187_T1.0041.00
189_L193_L0.9971.00
63_L94_V0.9941.00
66_A70_N0.9891.00
60_V143_F0.9781.00
84_Y87_G0.9741.00
137_V167_Y0.9681.00
61_G90_K0.9611.00
87_G90_K0.9591.00
93_L143_F0.9530.99
118_V123_I0.9440.99
164_A171_A0.9430.99
97_D129_G0.9420.99
78_D116_K0.9390.99
93_L142_V0.9350.99
60_V145_E0.9340.99
129_G138_R0.9250.99
32_T36_A0.9240.99
73_F112_A0.9230.99
162_W166_Q0.9150.99
61_G83_L0.9130.99
31_A185_F0.8970.99
111_Q115_A0.8970.99
34_L37_D0.8900.99
63_L113_L0.8800.99
98_N104_D0.8780.99
126_D139_A0.8770.99
182_K185_F0.8720.99
98_N127_Y0.8660.99
60_V148_I0.8620.99
155_F190_R0.8510.99
18_T22_A0.8470.99
124_F142_V0.8450.99
197_S201_D0.8420.99
147_H170_D0.8390.99
81_A118_V0.8390.99
89_V151_I0.8360.99
95_S126_D0.8350.99
17_R24_L0.8330.99
103_Y108_G0.8270.99
38_R42_N0.8260.99
140_K167_Y0.8150.98
33_I37_D0.8120.98
132_T156_H0.8090.98
37_D41_V0.8030.98
157_N161_I0.7930.98
158_Q195_R0.7860.98
112_A116_K0.7860.98
95_S109_M0.7770.98
37_D40_M0.7770.98
95_S135_S0.7760.98
148_I171_A0.7710.98
57_A147_H0.7710.98
165_K170_D0.7630.97
149_T172_I0.7630.97
29_A33_I0.7610.97
154_E178_D0.7580.97
150_I160_A0.7550.97
19_L22_A0.7550.97
40_M43_A0.7530.97
162_W165_K0.7520.97
81_A112_A0.7490.97
98_N101_K0.7470.97
83_L151_I0.7410.97
145_E148_I0.7410.97
110_Q123_I0.7370.97
39_V42_N0.7370.97
163_L167_Y0.7360.97
150_I171_A0.7320.97
70_N74_T0.7280.97
70_N112_A0.7270.97
166_Q198_A0.7220.97
129_G134_D0.7080.96
41_V44_S0.7060.96
131_S194_A0.7040.96
139_A143_F0.7000.96
185_F189_L0.7000.96
64_L135_S0.6980.96
65_G105_E0.6980.96
19_L23_C0.6970.96
39_V43_A0.6890.95
38_R41_V0.6860.95
21_I24_L0.6830.95
28_V32_T0.6820.95
20_K24_L0.6780.95
103_Y107_S0.6740.95
198_A202_A0.6700.95
183_H187_T0.6630.94
59_N90_K0.6600.94
97_D106_A0.6570.94
106_A126_D0.6520.94
165_K171_A0.6420.93
133_L163_L0.6400.93
59_N146_N0.6400.93
78_D81_A0.6390.93
188_Q192_K0.6390.93
34_L42_N0.6380.93
51_D54_A0.6350.93
34_L38_R0.6300.93
153_Q177_P0.6270.93
24_L28_V0.6190.92
31_A35_I0.6190.92
105_E135_S0.6180.92
140_K169_I0.6180.92
98_N102_N0.6170.92
88_K149_T0.6160.92
106_A127_Y0.6130.92
57_A90_K0.6110.92
67_R101_K0.6100.92
30_G34_L0.6080.91
78_D82_A0.6070.91
113_L116_K0.6060.91
136_V169_I0.6030.91
147_H172_I0.6010.91
74_T112_A0.5990.91
47_L165_K0.5980.91
108_G112_A0.5980.91
25_L33_I0.5970.91
149_T174_F0.5920.90
81_A94_V0.5890.90
80_A94_V0.5860.90
75_R177_P0.5830.90
72_Y187_T0.5830.90
98_N107_S0.5730.89
154_E175_N0.5700.89
72_Y153_Q0.5690.89
25_L29_A0.5680.88
162_W198_A0.5660.88
61_G92_L0.5650.88
59_N145_E0.5630.88
175_N178_D0.5590.88
77_I81_A0.5580.88
58_R87_G0.5560.87
36_A44_S0.5530.87
104_D129_G0.5530.87
64_L156_H0.5530.87
24_L32_T0.5490.87
30_G36_A0.5470.87
75_R78_D0.5470.87
131_S163_L0.5470.87
90_K122_V0.5460.86
73_F105_E0.5430.86
197_S200_I0.5420.86
182_K186_Y0.5420.86
154_E184_G0.5380.86
39_V44_S0.5380.86
131_S201_D0.5370.86
162_W202_A0.5360.85
128_A141_K0.5360.85
36_A41_V0.5360.85
160_A194_A0.5330.85
154_E158_Q0.5320.85
193_L197_S0.5300.85
48_T161_I0.5250.84
73_F77_I0.5250.84
21_I25_L0.5240.84
32_T45_K0.5240.84
59_N143_F0.5240.84
157_N176_A0.5220.84
132_T152_S0.5210.84
64_L132_T0.5190.84
162_W195_R0.5190.84
112_A115_A0.5180.83
113_L118_V0.5180.83
92_L118_V0.5170.83
158_Q161_I0.5160.83
129_G139_A0.5150.83
146_N170_D0.5120.83
84_Y88_K0.5100.83
58_R90_K0.5100.83
195_R199_V0.5100.83
57_A88_K0.5080.82
60_V91_W0.5070.82
108_G111_Q0.5060.82
16_R22_A0.5040.82
63_L109_M0.5040.82
104_D125_C0.5040.82
35_I42_N0.5020.82
162_W199_V0.5020.82
56_P172_I0.5020.82
194_A197_S0.5010.81
21_I32_T0.5000.81
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3ca8A 1 0.8609 100 0.518 Contact Map
4g4xA 1 0.4217 40.7 0.943 Contact Map
4pwtA 1 0.5174 39.3 0.943 Contact Map
2kgwA 1 0.4696 37.3 0.944 Contact Map
2hqsH 1 0.413 35.3 0.945 Contact Map
3td3A 2 0.4783 34.7 0.945 Contact Map
3ldtA 2 0.5217 31.7 0.946 Contact Map
1b0zA 4 0.9174 24.2 0.949 Contact Map
2aizP 1 0.5261 22.6 0.95 Contact Map
3ff1A 4 0.913 21.9 0.95 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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