YGJI - ECOLI - GREMLIN Contacts

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YGJI - Inner membrane transporter YgjI

UniProt:	P42590	Sequences: MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLLLTLSYILLAGTALVGGVQPADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKGLTAEERHIEATPASNVD	Download Alignment We filter this alignment to remove sites that have many gaps before running GREMLIN. Date: 2015_01
EcoGene:	EG12720
Length:	477 (422)
Sequences:	24870 (16204)
Seq/√Len:	788.8

ECOLI - YGJI GADC YCAM POTE YJEM AROP ANSP LYSP YIFK PROY GABP PUUP PHEP MMUP FRLA ADIC CYCA PLAP CADB ARCD YJEH YBAT TNAB
BACSU - ROCC YBXG HUTM ASPP GABP YBGF AAPA YTNA YBEC YDGF YHDG YVBW ROCE YFNA ARCD YECA STET YCGH YDAO GERBB YNDE GERAB GERKB
HALSA - Q9HHU7 Q9HQB3 Q9HSL5
SULSO - Q97XM0 Q97Z63 Q97WS3 Q97X49 Q7LXI7 Q97U05 Q97ZB5 Q97VA6 Q97U33 Q97WD4 Q97VA8 Q97VR4 Q97Y76 Q97U39 Q97YX9 Q97YN3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:

i	j	Sco	Prob
139_T	341_F	4.528	1.00
323_K	335_R	4.417	1.00
386_N	390_K	3.203	1.00
326_E	335_R	3.134	1.00
227_K	231_K	3.033	1.00
10_G	223_K	2.860	1.00
73_Y	317_E	2.816	1.00
89_A	314_E	2.766	1.00
222_V	228_S	2.759	1.00
224_G	227_K	2.746	1.00
47_T	241_G	2.705	1.00
315_I	325_V	2.635	1.00
171_A	250_L	2.613	1.00
132_M	345_I	2.599	1.00
378_L	411_S	2.588	1.00
328_N	334_A	2.578	1.00
15_L	235_L	2.463	1.00
323_K	326_E	2.455	1.00
169_L	173_T	2.396	1.00
60_E	388_R	2.386	1.00
220_N	316_P	2.382	1.00
11_K	235_L	2.381	1.00
221_D	309_K	2.237	1.00
77_K	85_A	2.234	1.00
408_I	412_M	2.186	1.00
338_W	342_L	2.159	1.00
11_K	228_S	2.152	1.00
139_T	337_A	2.150	1.00
312_F	316_P	2.145	1.00
140_W	144_N	2.132	1.00
14_L	222_V	2.109	1.00
136_A	345_I	2.083	1.00
147_K	151_P	2.056	1.00
11_K	15_L	2.051	1.00
143_T	334_A	2.044	1.00
259_E	276_Y	2.040	1.00
381_M	410_V	2.031	1.00
80_L	386_N	2.016	1.00
231_K	235_L	1.965	1.00
10_G	13_G	1.964	1.00
93_W	340_Q	1.955	1.00
131_S	348_M	1.955	1.00
57_I	381_M	1.935	1.00
272_G	275_A	1.934	1.00
324_T	339_I	1.926	1.00
44_F	48_I	1.908	1.00
77_K	82_G	1.899	1.00
318_G	322_K	1.891	1.00
132_M	348_M	1.871	1.00
158_T	162_L	1.864	1.00
448_G	452_W	1.854	1.00
80_L	382_L	1.816	1.00
13_G	154_S	1.815	1.00
5_K	327_L	1.784	1.00
442_G	446_F	1.760	1.00
136_A	341_F	1.751	1.00
328_N	332_V	1.742	1.00
256_S	259_E	1.737	1.00
234_I	238_I	1.730	1.00
224_G	228_S	1.716	1.00
76_V	88_T	1.712	1.00
15_L	239_F	1.704	1.00
181_P	184_A	1.684	1.00
142_S	301_L	1.661	1.00
43_F	46_A	1.660	1.00
126_A	129_I	1.648	1.00
162_L	166_S	1.645	1.00
272_G	276_Y	1.642	1.00
104_L	300_L	1.642	1.00
100_F	344_V	1.637	1.00
9_I	13_G	1.612	1.00
135_F	344_V	1.599	1.00
412_M	416_I	1.595	1.00
143_T	338_W	1.587	1.00
88_T	379_F	1.585	1.00
111_A	130_I	1.582	1.00
180_Q	183_D	1.576	1.00
330_N	334_A	1.573	1.00
446_F	450_A	1.564	1.00
432_I	435_I	1.564	1.00
450_A	454_Y	1.563	1.00
18_T	236_A	1.531	1.00
238_I	242_V	1.531	1.00
275_A	285_N	1.523	1.00
183_D	186_T	1.516	1.00
40_A	43_F	1.511	1.00
31_N	35_L	1.509	1.00
125_V	129_I	1.509	1.00
440_V	444_V	1.507	1.00
81_G	84_W	1.501	1.00
6_R	331_G	1.500	1.00
218_Y	305_A	1.494	1.00
224_G	231_K	1.491	1.00
386_N	389_A	1.491	1.00
48_I	52_I	1.489	1.00
42_M	201_V	1.486	1.00
180_Q	184_A	1.463	1.00
444_V	448_G	1.459	1.00
311_F	336_A	1.457	1.00
449_F	453_K	1.454	1.00
335_R	339_I	1.449	1.00
107_V	134_L	1.442	1.00
163_L	291_V	1.435	1.00
135_F	341_F	1.435	1.00
139_T	338_W	1.435	1.00
322_K	326_E	1.433	1.00
438_Y	442_G	1.427	1.00
444_V	447_L	1.423	1.00
76_V	379_F	1.422	1.00
104_L	135_F	1.419	1.00
445_I	449_F	1.418	1.00
434_T	437_F	1.418	1.00
275_A	280_P	1.410	1.00
55_C	237_G	1.401	1.00
144_N	330_N	1.396	1.00
39_S	43_F	1.395	1.00
182_A	186_T	1.395	1.00
13_G	150_G	1.381	1.00
307_P	340_Q	1.378	1.00
172_G	250_L	1.376	1.00
442_G	445_I	1.371	1.00
382_L	411_S	1.371	1.00
443_I	447_L	1.366	1.00
312_F	327_L	1.365	1.00
281_E	287_F	1.363	1.00
80_L	84_W	1.362	1.00
286_R	290_L	1.349	1.00
382_L	386_N	1.348	1.00
31_N	39_S	1.344	1.00
308_V	337_A	1.340	1.00
39_S	42_M	1.332	1.00
65_N	78_S	1.332	1.00
69_E	220_N	1.328	1.00
322_K	325_V	1.322	1.00
107_V	293_F	1.320	1.00
181_P	186_T	1.300	1.00
326_E	334_A	1.299	1.00
416_I	420_G	1.298	1.00
161_L	165_L	1.295	1.00
54_F	381_M	1.294	1.00
11_K	231_K	1.288	1.00
436_I	440_V	1.285	1.00
132_M	136_A	1.283	1.00
38_A	191_I	1.282	1.00
435_I	444_V	1.278	1.00
225_G	230_V	1.275	1.00
23_Y	26_N	1.271	1.00
186_T	189_A	1.270	1.00
79_S	383_A	1.268	1.00
391_L	394_L	1.242	1.00
55_C	233_I	1.236	1.00
103_L	299_S	1.228	1.00
175_L	253_V	1.227	1.00
311_F	320_F	1.224	1.00
68_S	74_A	1.223	1.00
22_V	240_I	1.220	1.00
5_K	312_F	1.218	1.00
228_S	231_K	1.214	1.00
74_A	78_S	1.214	1.00
435_I	438_Y	1.210	1.00
138_S	300_L	1.209	1.00
9_I	150_G	1.202	1.00
40_A	44_F	1.200	1.00
48_I	409_V	1.197	1.00
173_T	178_G	1.196	1.00
447_L	450_A	1.194	1.00
128_T	132_M	1.193	1.00
168_I	246_V	1.192	1.00
433_L	437_F	1.191	1.00
56_L	234_I	1.183	1.00
93_W	311_F	1.176	1.00
242_V	246_V	1.175	1.00
32_N	39_S	1.160	1.00
268_Q	272_G	1.160	1.00
18_T	215_V	1.156	1.00
9_I	14_L	1.149	1.00
49_F	413_L	1.143	1.00
68_S	78_S	1.140	1.00
64_L	396_R	1.140	1.00
40_A	249_V	1.137	1.00
171_A	254_F	1.134	1.00
404_R	408_I	1.134	1.00
167_Y	171_A	1.132	1.00
46_A	205_I	1.128	1.00
62_V	75_W	1.125	1.00
58_I	72_V	1.121	1.00
433_L	436_I	1.120	1.00
257_S	260_L	1.119	1.00
189_A	192_P	1.116	1.00
14_L	232_V	1.112	1.00
181_P	185_I	1.111	1.00
141_V	152_I	1.110	1.00
166_S	170_L	1.104	1.00
179_V	182_A	1.102	1.00
223_K	228_S	1.100	1.00
327_L	331_G	1.099	1.00
405_T	408_I	1.088	1.00
446_F	453_K	1.085	1.00
19_F	239_F	1.079	1.00
385_L	408_I	1.078	1.00
447_L	451_W	1.073	1.00
415_A	419_V	1.072	1.00
432_I	436_I	1.071	1.00
437_F	440_V	1.069	1.00
151_P	155_V	1.067	1.00
12_F	16_S	1.067	1.00
446_F	452_W	1.064	1.00
187_V	192_P	1.055	1.00
411_S	415_A	1.053	1.00
186_T	190_M	1.053	1.00
83_R	453_K	1.051	1.00
335_R	338_W	1.050	1.00
76_V	84_W	1.050	1.00
152_I	156_T	1.044	1.00
108_I	130_I	1.043	1.00
8_T	223_K	1.040	1.00
43_F	50_Y	1.037	1.00
73_Y	313_S	1.035	1.00
172_G	176_V	1.033	1.00
41_P	44_F	1.032	1.00
86_F	90_Y	1.031	1.00
342_L	346_P	1.029	1.00
184_A	188_D	1.029	1.00
184_A	187_V	1.027	1.00
378_L	415_A	1.027	1.00
185_I	189_A	1.023	1.00
316_P	325_V	1.022	1.00
57_I	407_I	1.022	1.00
17_L	218_Y	1.021	1.00
64_L	394_L	1.019	1.00
153_T	301_L	1.018	1.00
278_G	284_M	1.015	1.00
405_T	409_V	1.014	1.00
129_I	133_V	1.010	1.00
38_A	198_F	1.000	1.00
392_D	396_R	0.997	1.00
146_A	305_A	0.996	1.00
133_V	137_F	0.991	1.00
165_L	169_L	0.986	1.00
139_T	143_T	0.985	1.00
442_G	447_L	0.978	1.00
210_G	373_S	0.975	1.00
60_E	63_S	0.975	1.00
187_V	190_M	0.975	1.00
136_A	140_W	0.969	1.00
402_S	406_G	0.968	1.00
438_Y	441_G	0.963	1.00
439_N	443_I	0.963	1.00
143_T	332_V	0.954	1.00
399_R	402_S	0.949	1.00
432_I	446_F	0.949	1.00
389_A	392_D	0.947	1.00
111_A	293_F	0.943	1.00
437_F	441_G	0.940	1.00
441_G	445_I	0.939	1.00
414_I	417_F	0.938	1.00
19_F	240_I	0.931	1.00
78_S	391_L	0.931	1.00
186_T	191_I	0.924	1.00
43_F	48_I	0.923	1.00
143_T	328_N	0.922	1.00
378_L	382_L	0.921	1.00
180_Q	185_I	0.919	1.00
63_S	397_D	0.918	1.00
256_S	276_Y	0.915	1.00
434_T	446_F	0.904	1.00
32_N	35_L	0.903	1.00
185_I	188_D	0.901	1.00
156_T	298_G	0.898	1.00
281_E	284_M	0.896	1.00
274_A	279_L	0.892	1.00
191_I	195_N	0.891	1.00
183_D	188_D	0.891	1.00
168_I	250_L	0.891	1.00
102_S	207_M	0.889	1.00
304_T	341_F	0.886	1.00
431_N	434_T	0.883	1.00
47_T	209_A	0.883	1.00
8_T	147_K	0.881	1.00
90_Y	320_F	0.881	1.00
108_I	131_S	0.880	1.00
161_L	243_L	0.879	1.00
434_T	438_Y	0.879	1.00
235_L	239_F	0.876	1.00
137_F	297_F	0.875	1.00
219_V	229_F	0.874	1.00
77_K	317_E	0.872	1.00
403_R	407_I	0.871	1.00
263_T	272_G	0.869	1.00
213_E	217_V	0.867	1.00
324_T	335_R	0.866	1.00
241_G	245_S	0.857	1.00
24_S	27_N	0.851	1.00
160_M	295_A	0.849	1.00
419_V	423_A	0.848	1.00
111_A	115_F	0.847	1.00
403_R	406_G	0.845	1.00
432_I	438_Y	0.844	1.00
16_S	154_S	0.839	1.00
200_G	204_W	0.839	1.00
441_G	444_V	0.838	1.00
138_S	301_L	0.838	1.00
431_N	435_I	0.835	1.00
13_G	151_P	0.835	1.00
167_Y	274_A	0.830	1.00
385_L	407_I	0.826	1.00
102_S	366_I	0.825	1.00
393_H	396_R	0.824	1.00
449_F	452_W	0.823	1.00
249_V	253_V	0.820	1.00
70_A	73_Y	0.815	1.00
435_I	439_N	0.815	1.00
39_S	248_S	0.814	1.00
12_F	154_S	0.812	1.00
328_N	331_G	0.812	1.00
449_F	454_Y	0.811	1.00
189_A	193_N	0.808	1.00
254_F	273_M	0.807	1.00
42_M	50_Y	0.805	1.00
188_D	191_I	0.805	1.00
81_G	454_Y	0.803	1.00
410_V	414_I	0.799	1.00
29_I	106_R	0.798	1.00
84_W	379_F	0.798	1.00
334_A	338_W	0.797	1.00
107_V	297_F	0.797	1.00
182_A	185_I	0.794	1.00
130_I	133_V	0.794	1.00
24_S	28_V	0.792	1.00
341_F	345_I	0.790	1.00
441_G	446_F	0.789	1.00
187_V	191_I	0.788	1.00
320_F	324_T	0.788	1.00
435_I	440_V	0.787	1.00
108_I	127_T	0.786	1.00
442_G	449_F	0.785	1.00
151_P	154_S	0.785	1.00
168_I	172_G	0.784	1.00
416_I	419_V	0.781	1.00
11_K	232_V	0.780	1.00
173_T	177_G	0.779	1.00
175_L	178_G	0.779	1.00
368_M	372_A	0.777	1.00
44_F	47_T	0.775	1.00
76_V	383_A	0.773	1.00
70_A	74_A	0.768	1.00
107_V	296_M	0.767	1.00
43_F	47_T	0.765	1.00
26_N	30_N	0.765	1.00
435_I	446_F	0.764	1.00
5_K	221_D	0.763	1.00
214_S	306_T	0.762	1.00
179_V	183_D	0.762	1.00
64_L	397_D	0.759	1.00
384_Y	407_I	0.759	1.00
135_F	348_M	0.755	1.00
173_T	176_V	0.755	1.00
398_F	401_G	0.754	1.00
210_G	377_P	0.754	1.00
128_T	348_M	0.747	1.00
44_F	245_S	0.741	1.00
190_M	195_N	0.732	1.00
90_Y	442_G	0.732	1.00
394_L	397_D	0.728	1.00
409_V	413_L	0.727	1.00
388_R	392_D	0.727	1.00
437_F	442_G	0.722	1.00
61_F	384_Y	0.718	1.00
5_K	309_K	0.717	1.00
230_V	233_I	0.716	1.00
269_V	274_A	0.715	1.00
182_A	187_V	0.713	1.00
144_N	148_M	0.712	1.00
434_T	440_V	0.711	1.00
191_I	194_F	0.711	1.00
23_Y	28_V	0.710	1.00
432_I	442_G	0.710	1.00
436_I	439_N	0.709	1.00
437_F	447_L	0.708	1.00
105_P	365_I	0.705	1.00
432_I	437_F	0.701	1.00
378_L	414_I	0.701	1.00
132_M	349_I	0.700	1.00
12_F	151_P	0.700	1.00
61_F	75_W	0.700	1.00
40_A	252_N	0.699	1.00
440_V	451_W	0.698	1.00
247_S	270_F	0.697	1.00
443_I	449_F	0.695	1.00
64_L	67_N	0.694	1.00
138_S	304_T	0.694	1.00
33_I	36_G	0.693	1.00
439_N	444_V	0.693	1.00
434_T	442_G	0.692	1.00
268_Q	271_H	0.689	1.00
99_F	369_T	0.689	1.00
438_Y	449_F	0.687	1.00
436_I	442_G	0.686	1.00
175_L	250_L	0.686	1.00
142_S	305_A	0.684	1.00
8_T	146_A	0.684	1.00
191_I	198_F	0.683	1.00
79_S	386_N	0.683	1.00
384_Y	388_R	0.681	1.00
192_P	195_N	0.680	1.00
23_Y	160_M	0.679	1.00
180_Q	186_T	0.678	1.00
436_I	444_V	0.677	1.00
37_L	40_A	0.677	1.00
412_M	415_A	0.677	1.00
188_D	192_P	0.674	1.00
385_L	389_A	0.673	1.00
432_I	449_F	0.672	1.00
168_I	247_S	0.667	1.00
128_T	131_S	0.667	1.00
140_W	143_T	0.667	1.00
417_F	420_G	0.667	1.00
172_G	246_V	0.665	1.00
264_G	269_V	0.665	1.00
185_I	190_M	0.663	1.00
19_F	157_S	0.663	1.00
188_D	193_N	0.663	1.00
407_I	421_F	0.661	1.00
381_M	411_S	0.661	1.00
309_K	312_F	0.658	1.00
436_I	451_W	0.657	1.00
194_F	197_A	0.657	1.00
73_Y	77_K	0.657	1.00
304_T	308_V	0.657	1.00
22_V	236_A	0.656	1.00
438_Y	443_I	0.654	1.00
329_E	334_A	0.654	1.00
417_F	421_F	0.652	1.00
44_F	50_Y	0.651	1.00
342_L	345_I	0.651	1.00
224_G	230_V	0.650	1.00
184_A	189_A	0.648	1.00
438_Y	444_V	0.645	1.00
446_F	449_F	0.643	1.00
390_K	393_H	0.643	1.00
112_S	127_T	0.642	1.00
80_L	383_A	0.641	1.00
395_P	399_R	0.639	1.00
92_Y	96_N	0.639	1.00
15_L	232_V	0.639	1.00
97_L	340_Q	0.638	1.00
69_E	312_F	0.638	1.00
387_L	391_L	0.638	1.00
413_L	417_F	0.636	1.00
99_F	102_S	0.633	1.00
239_F	243_L	0.633	1.00
446_F	451_W	0.633	1.00
333_P	336_A	0.633	1.00
21_A	302_M	0.632	1.00
438_Y	450_A	0.632	1.00
407_I	414_I	0.631	1.00
435_I	442_G	0.631	1.00
83_R	87_I	0.629	1.00
143_T	330_N	0.627	1.00
150_G	154_S	0.625	1.00
235_L	238_I	0.625	1.00
8_T	12_F	0.624	1.00
142_S	337_A	0.624	1.00
138_S	297_F	0.624	1.00
84_W	87_I	0.621	1.00
324_T	336_A	0.620	1.00
79_S	387_L	0.620	1.00
195_N	198_F	0.620	1.00
308_V	336_A	0.620	1.00
383_A	387_L	0.619	1.00
402_S	405_T	0.618	1.00
37_L	252_N	0.618	1.00
442_G	450_A	0.617	1.00
408_I	411_S	0.617	1.00
407_I	411_S	0.616	1.00
41_P	45_L	0.615	1.00
134_L	300_L	0.615	1.00
311_F	339_I	0.615	1.00
37_L	257_S	0.615	1.00
414_I	418_A	0.615	1.00
216_A	233_I	0.613	1.00
98_F	368_M	0.613	1.00
91_T	376_P	0.613	1.00
323_K	339_I	0.612	1.00
190_M	193_N	0.611	1.00
434_T	445_I	0.610	1.00
15_L	18_T	0.610	1.00
58_I	380_I	0.606	1.00
193_N	196_W	0.604	1.00
143_T	337_A	0.604	1.00
114_A	290_L	0.603	1.00
401_G	405_T	0.602	1.00
179_V	185_I	0.602	1.00
101_T	347_L	0.601	1.00
246_V	250_L	0.599	1.00
42_M	47_T	0.598	1.00
54_F	414_I	0.597	1.00
103_L	106_R	0.597	1.00
418_A	421_F	0.596	1.00
148_M	151_P	0.594	1.00
20_A	157_S	0.593	1.00
55_C	212_A	0.592	1.00
73_Y	85_A	0.590	1.00
18_T	22_V	0.590	1.00
57_I	410_V	0.588	1.00
108_I	111_A	0.588	1.00
181_P	187_V	0.588	1.00
450_A	453_K	0.587	1.00
435_I	443_I	0.587	1.00
42_M	46_A	0.587	1.00
432_I	445_I	0.585	1.00
184_A	190_M	0.584	1.00
279_L	284_M	0.583	1.00
390_K	394_L	0.582	1.00
439_N	442_G	0.581	1.00
433_L	438_Y	0.581	1.00
111_A	134_L	0.580	1.00
439_N	446_F	0.580	1.00
30_N	366_I	0.580	1.00
43_F	51_F	0.580	1.00
440_V	443_I	0.579	1.00
438_Y	445_I	0.577	1.00
95_V	373_S	0.577	1.00
73_Y	89_A	0.577	1.00
97_L	343_I	0.577	1.00
101_T	365_I	0.576	1.00
170_L	174_A	0.576	1.00
110_Y	292_S	0.576	1.00
372_A	376_P	0.576	1.00
21_A	214_S	0.575	1.00
446_F	454_Y	0.574	1.00
220_N	312_F	0.574	1.00
221_D	327_L	0.573	1.00
226_S	397_D	0.572	1.00
413_L	416_I	0.569	1.00
195_N	199_L	0.569	1.00
60_E	401_G	0.569	1.00
41_P	198_F	0.568	1.00
410_V	413_L	0.568	1.00
315_I	324_T	0.567	1.00
250_L	253_V	0.566	1.00
398_F	402_S	0.564	1.00
135_F	345_I	0.564	1.00
435_I	448_G	0.564	1.00
210_G	213_E	0.563	1.00
159_L	291_V	0.562	1.00
391_L	396_R	0.560	1.00
25_F	28_V	0.559	1.00
217_V	306_T	0.559	1.00
95_V	98_F	0.559	1.00
72_V	213_E	0.559	1.00
62_V	216_A	0.558	1.00
96_N	303_W	0.557	1.00
199_L	416_I	0.556	1.00
197_A	200_G	0.556	1.00
183_D	190_M	0.556	1.00
280_P	286_R	0.555	1.00
181_P	190_M	0.555	1.00
61_F	79_S	0.554	1.00
400_M	406_G	0.553	1.00
52_I	409_V	0.553	1.00
150_G	301_L	0.552	1.00
433_L	440_V	0.551	1.00
55_C	59_A	0.551	1.00
247_S	251_I	0.549	1.00
40_A	50_Y	0.548	1.00
436_I	441_G	0.548	1.00
431_N	438_Y	0.548	1.00
21_A	303_W	0.547	1.00
113_Y	289_G	0.547	1.00
72_V	217_V	0.546	1.00
251_I	270_F	0.545	1.00
239_F	242_V	0.544	1.00
192_P	196_W	0.544	1.00
136_A	139_T	0.544	1.00
45_L	202_T	0.543	1.00
222_V	229_F	0.541	1.00
146_A	218_Y	0.541	1.00
400_M	403_R	0.540	1.00
145_G	148_M	0.540	1.00
339_I	343_I	0.539	1.00
417_F	422_V	0.538	1.00
104_L	108_I	0.538	1.00
183_D	187_V	0.538	1.00
175_L	254_F	0.537	1.00
34_E	200_G	0.536	1.00
154_S	158_T	0.535	1.00
229_F	233_I	0.534	1.00
112_S	116_L	0.534	1.00
389_A	393_H	0.533	1.00
59_A	63_S	0.532	1.00
439_N	450_A	0.532	1.00
183_D	189_A	0.531	1.00
411_S	421_F	0.530	1.00
434_T	451_W	0.530	1.00
440_V	447_L	0.529	1.00
28_V	160_M	0.529	1.00
42_M	45_L	0.528	1.00
287_F	291_V	0.527	1.00
441_G	452_W	0.526	1.00
159_L	163_L	0.525	1.00
44_F	51_F	0.525	1.00
139_T	304_T	0.525	1.00
62_V	229_F	0.525	1.00
43_F	49_F	0.524	1.00
179_V	184_A	0.522	1.00
24_S	29_I	0.521	1.00
19_F	22_V	0.520	1.00
185_I	191_I	0.519	1.00
99_F	103_L	0.517	1.00
103_L	300_L	0.517	1.00
295_A	298_G	0.517	1.00
170_L	278_G	0.516	1.00
134_L	297_F	0.516	1.00
221_D	333_P	0.515	1.00
54_F	213_E	0.515	1.00
437_F	450_A	0.515	1.00
435_I	449_F	0.514	1.00
23_Y	243_L	0.513	1.00
25_F	30_N	0.513	1.00
434_T	443_I	0.511	1.00
443_I	450_A	0.510	1.00
255_V	272_G	0.510	1.00
445_I	448_G	0.507	1.00
451_W	454_Y	0.507	1.00
346_P	349_I	0.506	1.00
12_F	15_L	0.505	1.00
162_L	165_L	0.504	1.00
47_T	51_F	0.503	1.00
447_L	454_Y	0.503	1.00
106_R	110_Y	0.501	1.00
199_L	420_G	0.500	1.00
182_A	190_M	0.500	1.00

Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

Text file of predictions (all 3L/2 predictions)
Generate restraints for ROSETTA Structure Modeling
Upload PDB model overlay contacts on the model

HHsearch Results:

Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.

PDB	Chains	Cov	%	HHΔ
3l1lA	2	0.8826	100	0.302	Contact Map
4djkA	2	0.9057	100	0.313	Contact Map
3giaA	1	0.8973	100	0.351	Contact Map
2jlnA	1	0.8784	98.9	0.859	Contact Map
3dh4A	3	0.9015	98.8	0.862	Contact Map
2xq2A	2	0.9036	98.8	0.865	Contact Map
2a65A	2	0.9078	98.1	0.89	Contact Map
4xp4A	1	0.9182	97.7	0.899	Contact Map
4wgvA	2	0.782	97.7	0.9	Contact Map
4us3A	1	0.8155	97.3	0.906	Contact Map

Sequence Conservation (Image Generated using WebLogo v3)

Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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