GREMLIN Database
YBFI - Putative uncharacterized protein YbfI
UniProt: P39901 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12390
Length: 65 (61)
Sequences: 1103 (557)
Seq/√Len: 71.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
46_D49_R3.8441.00
25_A28_H3.3301.00
35_Y38_H2.4451.00
10_I59_I2.4011.00
30_N34_N2.2351.00
17_I31_Y2.1101.00
47_P50_P2.0961.00
45_Q51_R2.0121.00
14_L18_R1.9321.00
45_Q52_H1.9021.00
4_L63_F1.7771.00
11_V15_C1.6901.00
31_Y35_Y1.6050.99
36_M53_F1.5930.99
17_I25_A1.5370.99
12_R59_I1.4770.99
15_C19_Q1.3140.97
5_S19_Q1.2990.97
25_A31_Y1.2510.97
56_E62_R1.2070.96
47_P61_Y1.1690.95
3_A11_V1.1660.95
11_V16_R1.1070.93
34_N59_I1.0520.91
14_L27_E1.0500.91
4_L34_N1.0490.91
44_E48_A0.9930.89
37_G41_Q0.9870.89
36_M57_T0.9690.88
44_E54_I0.9560.87
13_Y59_I0.9430.86
4_L7_C0.9350.86
18_R26_I0.9300.85
33_R56_E0.9280.85
9_Q12_R0.9120.84
6_V12_R0.9080.84
30_N55_T0.8970.83
52_H57_T0.8940.83
29_S37_G0.8760.82
28_H58_G0.8340.79
34_N37_G0.8290.78
15_C18_R0.7990.76
4_L39_L0.7950.75
5_S18_R0.7850.74
44_E47_P0.7820.74
10_I15_C0.7690.73
8_W30_N0.7690.73
52_H55_T0.7660.72
43_L53_F0.7610.72
35_Y61_Y0.7470.70
42_K53_F0.7450.70
46_D50_P0.7440.70
41_Q57_T0.7400.70
28_H31_Y0.7370.69
34_N41_Q0.7350.69
3_A53_F0.7040.66
10_I62_R0.6920.65
53_F63_F0.6890.64
15_C30_N0.6810.63
17_I30_N0.6680.62
17_I22_G0.6680.62
9_Q59_I0.6660.62
44_E50_P0.6660.62
43_L48_A0.6530.60
7_C11_V0.6500.60
10_I43_L0.6420.59
30_N37_G0.6400.59
6_V9_Q0.6310.58
14_L26_I0.6280.57
32_L43_L0.6280.57
37_G55_T0.6140.55
8_W41_Q0.5920.53
21_X34_N0.5810.51
8_W32_L0.5790.51
5_S36_M0.5570.49
7_C63_F0.5550.48
14_L24_N0.5520.48
27_E49_R0.5510.48
12_R15_C0.5490.48
31_Y54_I0.5480.47
41_Q58_G0.5460.47
42_K59_I0.5450.47
38_H41_Q0.5390.46
33_R62_R0.5370.46
5_S14_L0.5340.46
35_Y63_F0.5320.45
13_Y31_Y0.5270.45
41_Q48_A0.5240.45
4_L26_I0.5090.43
10_I63_F0.5050.42
44_E52_H0.5050.42
18_R23_L0.5000.42
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
3zq7A 1 1 99.5 0.516 Contact Map
2zxjA 1 1 99.5 0.52 Contact Map
4nhjA 2 1 99.5 0.52 Contact Map
1opcA 1 1 99.4 0.529 Contact Map
4ixaA 1 1 99.4 0.529 Contact Map
2hwvA 1 1 99.4 0.53 Contact Map
2k4jA 1 1 99.4 0.537 Contact Map
3q9vA 1 0.9846 99.4 0.544 Contact Map
1gxqA 1 0.9846 99.4 0.545 Contact Map
2pmuA 3 0.9692 99.4 0.546 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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