GREMLIN Database
YGIL - Uncharacterized fimbrial-like protein YgiL
UniProt: P39834 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12363
Length: 183 (163)
Sequences: 3395 (2678)
Seq/√Len: 209.8

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
108_L124_G3.1241.00
125_V158_A3.1001.00
121_T168_T3.0641.00
128_L159_R2.8061.00
126_R159_R2.7681.00
42_S79_D2.7581.00
126_R161_E2.7361.00
92_A180_I2.7261.00
109_L137_L2.6621.00
74_T153_E2.6361.00
111_N172_V2.5201.00
44_K78_Q2.4171.00
160_M172_V2.3991.00
76_H153_E2.2731.00
122_G167_A2.2451.00
119_G171_N2.1291.00
132_S157_K2.1241.00
125_V174_A2.0591.00
63_K66_Q1.9731.00
74_T155_N1.9551.00
24_D27_H1.8971.00
129_D133_G1.8811.00
136_T139_T1.8601.00
126_R134_E1.8361.00
109_L176_A1.8351.00
108_L161_E1.7891.00
70_A159_R1.7771.00
44_K76_H1.7451.00
72_P157_K1.7001.00
98_T109_L1.6291.00
67_K126_R1.6001.00
97_T138_G1.5911.00
107_D136_T1.5651.00
97_T179_K1.5621.00
57_V68_S1.5541.00
35_E56_E1.4481.00
62_L162_S1.4451.00
55_G71_E1.4331.00
103_T124_G1.4051.00
14_A17_L1.4031.00
18_S22_F1.3891.00
67_K159_R1.3681.00
98_T101_T1.3651.00
54_L160_M1.3621.00
108_L126_R1.3601.00
72_P155_N1.3421.00
73_F127_I1.3311.00
44_K47_D1.3301.00
55_G172_V1.3281.00
50_L75_I1.3251.00
67_K128_L1.3171.00
45_P50_L1.2941.00
47_D76_H1.2671.00
93_K181_A1.2591.00
94_V154_L1.2051.00
55_G69_L1.2011.00
28_G32_F1.1971.00
122_G165_K1.1691.00
92_A152_Q1.1521.00
47_D50_L1.1501.00
67_K161_E1.1501.00
147_N152_Q1.1481.00
101_T104_G1.1271.00
54_L172_V1.1231.00
100_N107_D1.1181.00
70_A157_K1.1141.00
18_S21_V1.0731.00
103_T106_S1.0581.00
112_T175_Q1.0521.00
143_I147_N1.0511.00
130_S155_N1.0481.00
162_S167_A1.0331.00
52_V73_F1.0301.00
109_L174_A1.0271.00
62_L123_V1.0241.00
31_K175_Q1.0221.00
42_S78_Q0.9971.00
62_L167_A0.9941.00
58_A61_V0.9931.00
64_S162_S0.9931.00
9_L12_G0.9891.00
95_T140_P0.9861.00
127_I176_A0.9801.00
128_L157_K0.9671.00
28_G178_Y0.9571.00
61_V68_S0.9561.00
101_T163_P0.9541.00
19_N22_F0.9531.00
63_K162_S0.9460.99
62_L66_Q0.9450.99
95_T181_A0.9420.99
54_L125_V0.9400.99
147_N150_S0.9310.99
38_S59_D0.9270.99
19_N23_A0.9260.99
11_A14_A0.9250.99
100_N137_L0.9170.99
96_F127_I0.9050.99
162_S166_D0.9010.99
75_I178_Y0.9000.99
144_T147_N0.8950.99
123_V160_M0.8940.99
11_A15_M0.8910.99
135_V141_V0.8860.99
57_V62_L0.8640.99
96_F156_F0.8640.99
112_T173_Y0.8580.99
13_V17_L0.8490.99
13_V16_I0.8460.99
94_V180_I0.8420.99
33_K53_N0.8400.99
10_V13_V0.8340.99
50_L178_Y0.8310.99
91_K144_T0.8300.99
57_V172_V0.8220.99
57_V160_M0.8180.98
141_V156_F0.8170.98
15_M18_S0.8090.98
118_G171_N0.8080.98
38_S81_M0.8030.98
81_M87_T0.8020.98
15_M19_N0.8020.98
120_A123_V0.8000.98
143_I146_N0.7990.98
62_L165_K0.7940.98
125_V172_V0.7800.98
77_L152_Q0.7760.98
12_G15_M0.7740.98
101_T124_G0.7730.98
14_A20_N0.7720.98
33_K51_T0.7720.98
76_H151_Y0.7710.98
36_V167_A0.7620.98
29_I49_D0.7570.97
16_I19_N0.7550.97
18_S23_A0.7440.97
123_V167_A0.7360.97
12_G16_I0.7280.97
91_K146_N0.7280.97
54_L158_A0.7220.97
23_A27_H0.7200.97
67_K70_A0.7180.97
112_T119_G0.7170.97
62_L163_P0.7130.96
59_D169_P0.7100.96
128_L134_E0.7100.96
127_I137_L0.7090.96
14_A18_S0.7080.96
54_L71_E0.7060.96
162_S165_K0.7020.96
16_I20_N0.7020.96
10_V14_A0.7010.96
53_N160_M0.6960.96
17_L20_N0.6920.96
96_F180_I0.6900.96
12_G19_N0.6860.96
53_N71_E0.6840.95
30_V176_A0.6800.95
20_N24_D0.6770.95
10_V22_F0.6740.95
137_L174_A0.6690.95
21_V24_D0.6690.95
59_D167_A0.6600.95
92_A147_N0.6600.95
96_F135_V0.6580.94
9_L17_L0.6570.94
40_P160_M0.6570.94
66_Q162_S0.6530.94
26_G29_I0.6520.94
81_M128_L0.6510.94
68_S160_M0.6510.94
93_K140_P0.6490.94
111_N120_A0.6480.94
15_M21_V0.6390.94
55_G173_Y0.6390.94
36_V57_V0.6340.93
133_G143_I0.6300.93
70_A128_L0.6300.93
99_A110_K0.6270.93
97_T177_D0.6260.93
45_P48_E0.6240.93
111_N173_Y0.6230.93
93_K141_V0.6230.93
111_N123_V0.6200.92
101_T110_K0.6200.92
122_G163_P0.6190.92
13_V22_F0.6150.92
17_L21_V0.6120.92
23_A26_G0.6090.92
96_F178_Y0.6060.92
61_V69_L0.6020.91
54_L73_F0.6000.91
145_F149_N0.5940.91
135_V156_F0.5930.91
78_Q151_Y0.5900.91
54_L111_N0.5860.90
91_K149_N0.5820.90
95_T98_T0.5810.90
53_N56_E0.5780.90
109_L125_V0.5780.90
128_L161_E0.5730.89
137_L176_A0.5720.89
146_N149_N0.5680.89
111_N118_G0.5610.88
51_T177_D0.5610.88
40_P176_A0.5570.88
160_M163_P0.5520.87
111_N174_A0.5500.87
9_L16_I0.5500.87
95_T139_T0.5490.87
31_K51_T0.5480.87
136_T141_V0.5480.87
104_G107_D0.5470.87
36_V111_N0.5470.87
120_A174_A0.5460.87
11_A19_N0.5460.87
28_G34_G0.5450.87
175_Q180_I0.5430.87
9_L13_V0.5430.87
124_G163_P0.5410.86
14_A21_V0.5390.86
38_S90_S0.5390.86
54_L159_R0.5390.86
137_L156_F0.5380.86
52_V158_A0.5350.86
134_E137_L0.5310.85
31_K49_D0.5300.85
73_F158_A0.5300.85
93_K144_T0.5300.85
34_G118_G0.5290.85
146_N151_Y0.5280.85
30_V51_T0.5270.85
52_V71_E0.5240.85
51_T73_F0.5190.84
111_N160_M0.5190.84
62_L172_V0.5170.84
32_F39_A0.5160.84
10_V19_N0.5130.83
20_N23_A0.5120.83
12_G18_S0.5100.83
10_V20_N0.5070.83
112_T174_A0.5020.82
98_T175_Q0.5000.82
45_P78_Q0.5000.82
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
2xg5B 1 0.7869 100 0.27 Contact Map
2jmrA 1 0.8251 100 0.276 Contact Map
2jtyA 1 0.8579 100 0.29 Contact Map
2uy6B 2 0.8087 100 0.295 Contact Map
1pdkB 1 0.765 100 0.321 Contact Map
3bwuF 1 0.6776 100 0.366 Contact Map
2w07B 1 0.6448 100 0.372 Contact Map
3bfqG 1 0.7158 99.9 0.397 Contact Map
4dwhB 1 0.7432 99.9 0.398 Contact Map
5afoA 1 0.929 99.9 0.401 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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