GREMLIN Database
YBAL - Inner membrane protein YbaL
UniProt: P39830 Sequences:
Download Alignment
We filter this alignment to remove sites that have many gaps before running GREMLIN.

Date: 2015_01
EcoGene: EG12623
Length: 558 (506)
Sequences: 4506 (3044)
Seq/√Len: 135.3

GREMLIN Results:

Legend: The darker and larger the blue dots, the higher coevolution strength.

Residue pairs sorted by coevolution strength:
i j Sco Prob
485_L502_A7.5511.00
487_L499_V4.1181.00
387_L390_Y3.9891.00
422_L433_G3.9861.00
391_L394_T3.9811.00
309_L375_L3.8541.00
387_L391_L3.7181.00
194_G198_A3.6581.00
191_I195_K3.6021.00
321_F338_A3.6011.00
321_F331_Q3.5021.00
419_H483_K3.4931.00
485_L509_I3.4641.00
141_L146_R3.4101.00
104_M121_G3.3651.00
105_A109_V3.3631.00
354_L358_L3.2241.00
417_C481_C3.1561.00
306_L310_A3.1061.00
503_R511_I3.0561.00
107_S117_G3.0371.00
499_V529_A3.0331.00
205_L209_R2.8941.00
500_A527_R2.8361.00
213_W217_R2.8181.00
503_R530_N2.8031.00
104_M108_A2.7481.00
502_A509_I2.7131.00
487_L495_A2.5691.00
510_E530_N2.4841.00
190_G194_G2.4781.00
479_L506_N2.4661.00
102_L319_A2.4481.00
479_L485_L2.3631.00
487_L498_I2.3491.00
339_A383_L2.3221.00
385_A389_K2.3091.00
352_A369_V2.2851.00
308_T372_G2.2851.00
55_K58_P2.2491.00
356_M366_Q2.2301.00
343_Q380_N2.1821.00
123_C352_A2.1801.00
390_Y394_T2.1551.00
113_S116_T2.1501.00
16_V233_A2.1391.00
354_L357_A2.1391.00
213_W216_A2.1311.00
100_T122_L2.1301.00
475_Q480_E2.1281.00
209_R213_W2.0991.00
418_N483_K2.0961.00
386_L390_Y2.0851.00
362_P365_G2.0391.00
312_I372_G1.9541.00
43_A50_F1.9471.00
515_A521_V1.9371.00
491_N494_E1.9321.00
489_I498_I1.9321.00
269_R273_D1.9291.00
523_Y526_E1.9091.00
311_I315_G1.9071.00
104_M118_I1.8741.00
325_R328_G1.8531.00
426_G429_G1.8501.00
324_V334_A1.8191.00
212_P265_E1.8161.00
313_L379_L1.7951.00
101_L105_A1.7891.00
517_Y520_E1.7821.00
107_S112_W1.7731.00
309_L376_S1.7601.00
104_M114_L1.7581.00
150_A340_S1.7581.00
389_K393_K1.7341.00
355_G358_L1.7261.00
348_A373_A1.7231.00
21_L42_L1.7161.00
388_E391_L1.7161.00
456_L459_R1.7151.00
344_I348_A1.7041.00
303_L307_A1.6911.00
421_L482_A1.6621.00
359_N363_Q1.6621.00
496_G523_Y1.6601.00
368_L372_G1.6551.00
38_L42_L1.6491.00
475_Q505_K1.6421.00
421_L479_L1.6411.00
105_A108_A1.6281.00
192_T195_K1.6251.00
149_I329_H1.6241.00
522_A526_E1.6161.00
423_V485_L1.6151.00
93_I97_A1.6081.00
471_E505_K1.6031.00
422_L432_L1.5991.00
58_P288_S1.5921.00
427_R430_S1.5871.00
456_L461_V1.5821.00
210_L213_W1.5791.00
299_I302_P1.5751.00
310_A314_F1.5751.00
96_I160_V1.5701.00
447_E453_V1.5681.00
312_I344_I1.5661.00
344_I373_A1.5621.00
453_V463_A1.5591.00
325_R331_Q1.5511.00
294_D367_N1.5431.00
321_F325_R1.5351.00
82_M85_K1.5251.00
120_F369_V1.5071.00
99_A103_G1.5071.00
499_V511_I1.5071.00
496_G527_R1.5041.00
206_V210_L1.5021.00
102_L315_G1.5021.00
378_M382_V1.4931.00
136_L147_G1.4901.00
500_A504_A1.4861.00
106_L109_V1.4841.00
122_L164_T1.4701.00
119_V355_G1.4641.00
88_A107_S1.4621.00
416_I419_H1.4601.00
409_E412_I1.4451.00
305_V368_L1.4421.00
121_G125_S1.4371.00
69_M126_T1.4211.00
108_A114_L1.4191.00
498_I502_A1.4171.00
410_K413_P1.4111.00
198_A202_I1.4011.00
21_L39_A1.3941.00
153_W337_I1.3821.00
407_E411_Q1.3751.00
42_L47_T1.3581.00
131_V377_I1.3571.00
502_A506_N1.3481.00
359_N362_P1.3341.00
496_G500_A1.3321.00
479_L505_K1.3271.00
317_S339_A1.3241.00
265_E457_R1.3231.00
492_G523_Y1.3211.00
17_L43_A1.3031.00
478_H481_C1.3011.00
79_K83_A1.3001.00
146_R336_T1.2941.00
119_V123_C1.2921.00
206_V209_R1.2891.00
269_R272_H1.2861.00
293_F374_I1.2811.00
492_G495_A1.2801.00
202_I205_L1.2771.00
411_Q414_V1.2731.00
139_R385_A1.2681.00
447_E452_R1.2661.00
304_A368_L1.2641.00
496_G520_E1.2611.00
127_A157_E1.2581.00
112_W117_G1.2561.00
414_V417_C1.2531.00
506_N509_I1.2521.00
489_I495_A1.2481.00
146_R333_T1.2461.00
494_E497_E1.2461.00
162_V351_L1.2391.00
394_T397_L1.2351.00
89_I92_A1.2321.00
13_G17_L1.2301.00
91_G323_L1.2291.00
90_P327_F1.2211.00
324_V329_H1.2181.00
497_E500_A1.2151.00
120_F124_L1.2071.00
26_N29_R1.2061.00
107_S365_G1.1981.00
45_P291_M1.1971.00
449_S452_R1.1840.99
19_F233_A1.1750.99
420_A436_L1.1750.99
101_L104_M1.1420.99
98_V102_L1.1390.99
513_A527_R1.1360.99
105_A114_L1.1310.99
479_L509_I1.1240.99
103_G107_S1.1200.99
84_V87_I1.1140.99
141_L384_F1.1090.99
100_T164_T1.1040.99
99_A320_A1.0970.99
215_M234_L1.0950.99
452_R455_E1.0950.99
527_R530_N1.0940.99
468_A498_I1.0850.99
492_G520_E1.0840.99
41_V198_A1.0840.99
302_P306_L1.0810.99
424_G429_G1.0800.99
31_S134_R1.0790.99
212_P264_S1.0740.99
273_D470_N1.0730.99
423_V468_A1.0730.99
261_L270_A1.0730.99
53_D56_L1.0730.99
388_E395_E1.0720.99
30_I37_L1.0710.99
501_S504_A1.0670.99
520_E524_I1.0670.99
154_L347_F1.0640.99
94_A97_A1.0640.99
231_V270_A1.0640.99
518_D521_V1.0620.99
522_A525_T1.0610.99
425_Y433_G1.0590.99
81_L88_A1.0530.99
312_I376_S1.0480.99
92_A95_Q1.0460.99
132_L203_M1.0410.99
391_L398_E1.0350.99
77_S263_E1.0320.99
19_F22_G1.0310.99
495_A527_R1.0310.99
12_V233_A1.0290.99
240_F245_L1.0270.99
84_V88_A1.0210.98
96_I99_A1.0200.98
419_H442_P1.0150.98
298_L371_A1.0060.98
426_G430_S1.0050.98
316_K341_L1.0020.98
219_A266_L0.9990.98
99_A319_A0.9980.98
334_A338_A0.9870.98
515_A519_D0.9860.98
484_W510_E0.9830.98
294_D297_I0.9810.98
44_G51_V0.9760.98
391_L395_E0.9760.98
322_F326_L0.9730.98
471_E504_A0.9720.98
452_R456_L0.9680.98
135_A340_S0.9670.98
511_I529_A0.9650.98
126_T161_M0.9620.98
43_A291_M0.9610.98
9_T12_V0.9600.98
487_L513_A0.9560.98
36_Y283_V0.9550.98
132_L341_L0.9550.98
243_V248_V0.9550.98
154_L157_E0.9530.98
199_F248_V0.9510.98
483_K510_E0.9510.98
429_G453_V0.9500.98
471_E501_S0.9480.97
116_T362_P0.9470.97
44_G48_P0.9420.97
422_L486_I0.9400.97
192_T196_V0.9400.97
87_I149_I0.9380.97
239_A250_F0.9260.97
393_K396_T0.9190.97
129_T154_L0.9180.97
124_L312_I0.9170.97
353_G357_A0.9160.97
31_S123_C0.9150.97
491_N496_G0.9120.97
72_V76_F0.9090.97
71_G75_H0.9080.97
422_L436_L0.9060.97
128_S157_E0.9060.97
346_E349_F0.9050.97
201_A205_L0.9050.97
22_G32_P0.9050.97
288_S292_L0.9050.97
97_A100_T0.9030.97
513_A529_A0.9020.97
21_L193_I0.8980.97
22_G283_V0.8980.97
437_L443_L0.8970.97
443_L462_R0.8960.96
132_L343_Q0.8960.96
510_E513_A0.8960.96
107_S120_F0.8890.96
432_L486_I0.8870.96
435_K439_S0.8870.96
471_E506_N0.8850.96
455_E458_E0.8840.96
496_G499_V0.8830.96
446_I464_V0.8820.96
66_I69_M0.8790.96
12_V16_V0.8780.96
127_A341_L0.8780.96
63_L236_L0.8770.96
83_A86_A0.8750.96
309_L313_L0.8740.96
280_A351_L0.8720.96
127_A132_L0.8710.96
99_A157_E0.8700.96
501_S506_N0.8610.96
243_V246_F0.8610.96
124_L369_V0.8590.96
486_I512_I0.8580.96
130_V161_M0.8570.95
390_Y393_K0.8560.95
37_L43_A0.8550.95
468_A489_I0.8540.95
455_E459_R0.8520.95
513_A524_I0.8520.95
128_S285_F0.8500.95
450_R454_D0.8490.95
471_E475_Q0.8490.95
503_R508_D0.8470.95
229_L280_A0.8460.95
410_K414_V0.8450.95
14_G22_G0.8430.95
421_L485_L0.8430.95
214_I217_R0.8400.95
57_A288_S0.8370.95
102_L105_A0.8350.95
128_S343_Q0.8300.95
198_A201_A0.8280.95
479_L502_A0.8280.95
231_V262_N0.8250.94
301_Q364_A0.8190.94
433_G443_L0.8170.94
112_W120_F0.8160.94
454_D458_E0.8150.94
35_G39_A0.8130.94
96_I125_S0.8130.94
168_L358_L0.8130.94
189_M193_I0.8120.94
423_V498_I0.8120.94
386_L389_K0.8110.94
306_L309_L0.8110.94
343_Q346_E0.8090.94
127_A346_E0.8080.94
408_E411_Q0.8080.94
126_T164_T0.8060.94
499_V513_A0.8050.94
301_Q304_A0.8030.94
218_S230_S0.8020.94
411_Q491_N0.8020.94
409_E414_V0.8010.94
377_I380_N0.8000.93
456_L463_A0.7990.93
304_A307_A0.7980.93
521_V526_E0.7960.93
113_S117_G0.7950.93
16_V20_I0.7940.93
14_G287_V0.7920.93
411_Q416_I0.7900.93
521_V525_T0.7890.93
360_L364_A0.7890.93
153_W345_G0.7880.93
425_Y430_S0.7870.93
429_G488_T0.7860.93
489_I494_E0.7840.93
89_I94_A0.7840.93
350_I373_A0.7820.93
146_R337_I0.7800.93
345_G349_F0.7790.93
76_F262_N0.7780.93
45_P294_D0.7770.92
188_D191_I0.7760.92
503_R529_A0.7760.92
325_R334_A0.7750.92
157_E347_F0.7750.92
518_D522_A0.7730.92
117_G362_P0.7720.92
150_A289_V0.7690.92
254_A334_A0.7680.92
89_I93_I0.7670.92
12_V240_F0.7660.92
429_G433_G0.7660.92
56_L59_E0.7650.92
179_D182_F0.7650.92
492_G516_H0.7630.92
107_S308_T0.7630.92
340_S384_F0.7610.92
74_L261_L0.7600.92
64_G68_L0.7590.92
473_I477_A0.7580.92
480_E508_D0.7570.91
73_G290_G0.7560.91
329_H333_T0.7520.91
394_T398_E0.7520.91
408_E412_I0.7510.91
285_F346_E0.7500.91
391_L397_L0.7500.91
516_H522_A0.7480.91
330_S333_T0.7480.91
387_L394_T0.7460.91
352_A361_L0.7440.91
238_V260_V0.7430.91
356_M363_Q0.7430.91
490_P516_H0.7420.91
88_A156_V0.7420.91
427_R514_R0.7380.90
317_S338_A0.7370.90
197_I201_A0.7350.90
207_G238_V0.7340.90
469_A501_S0.7340.90
95_Q99_A0.7330.90
91_G95_Q0.7330.90
96_I156_V0.7310.90
420_A486_I0.7300.90
323_L327_F0.7270.90
153_W320_A0.7260.90
444_V479_L0.7240.90
33_L126_T0.7230.90
233_A490_P0.7230.90
91_G327_F0.7220.89
68_L334_A0.7200.89
497_E501_S0.7180.89
191_I194_G0.7180.89
453_V465_L0.7170.89
208_R260_V0.7160.89
157_E161_M0.7150.89
136_L142_I0.7130.89
123_C351_L0.7100.89
492_G499_V0.7090.89
157_E346_E0.7090.89
406_I409_E0.7080.89
36_Y44_G0.7070.88
480_E493_Y0.7060.88
129_T346_E0.7050.88
15_L284_L0.7030.88
503_R506_N0.7020.88
42_L45_P0.7020.88
465_L515_A0.7010.88
321_F334_A0.7010.88
453_V457_R0.7000.88
86_A89_I0.7000.88
511_I530_N0.6990.88
215_M270_A0.6980.88
136_L150_A0.6970.88
106_L315_G0.6970.88
412_I417_C0.6970.88
426_G436_L0.6950.88
132_L340_S0.6930.87
27_K111_G0.6920.87
254_A285_F0.6900.87
78_L82_M0.6890.87
32_P88_A0.6880.87
50_F53_D0.6860.87
98_V101_L0.6860.87
275_L279_D0.6850.87
407_E414_V0.6840.87
12_V156_V0.6830.87
420_A484_W0.6780.86
487_L491_N0.6760.86
87_I152_G0.6760.86
388_E392_A0.6750.86
117_G121_G0.6740.86
412_I415_D0.6730.86
75_H285_F0.6720.86
164_T351_L0.6700.86
64_G285_F0.6690.86
162_V343_Q0.6680.85
41_V46_F0.6680.85
20_I24_L0.6670.85
124_L344_I0.6670.85
19_F230_S0.6660.85
439_S459_R0.6660.85
25_A35_G0.6650.85
193_I247_D0.6650.85
409_E417_C0.6640.85
424_G432_L0.6620.85
307_A311_I0.6610.85
454_D500_A0.6600.85
128_S346_E0.6590.85
419_H482_A0.6590.85
489_I492_G0.6570.85
161_M351_L0.6560.84
336_T388_E0.6560.84
332_R336_T0.6550.84
194_G197_I0.6550.84
75_H271_A0.6540.84
314_F317_S0.6540.84
420_A441_I0.6540.84
153_W316_K0.6520.84
86_A299_I0.6500.84
409_E413_P0.6500.84
289_V346_E0.6490.84
434_E437_L0.6480.84
98_V323_L0.6470.84
93_I156_V0.6470.84
339_A380_N0.6460.84
485_L488_T0.6450.83
424_G433_G0.6430.83
364_A368_L0.6430.83
305_V309_L0.6420.83
242_A245_L0.6410.83
464_V472_E0.6410.83
157_E285_F0.6410.83
139_R388_E0.6410.83
461_V471_E0.6390.83
64_G255_F0.6390.83
451_T455_E0.6380.83
283_V377_I0.6370.83
189_M192_T0.6370.83
446_I473_I0.6370.83
12_V236_L0.6350.83
115_M118_I0.6350.83
66_I239_A0.6350.83
464_V473_I0.6330.82
45_P49_G0.6320.82
521_V529_A0.6320.82
385_A501_S0.6310.82
130_V350_I0.6300.82
100_T125_S0.6290.82
89_I260_V0.6290.82
129_T285_F0.6280.82
33_L251_A0.6280.82
123_C369_V0.6280.82
166_V354_L0.6280.82
104_M107_S0.6260.82
61_A64_G0.6260.82
430_S439_S0.6260.82
47_T50_F0.6250.82
498_I509_I0.6250.82
112_W245_L0.6230.81
227_F231_V0.6220.81
132_L154_L0.6220.81
345_G350_I0.6200.81
454_D457_R0.6200.81
510_E529_A0.6190.81
483_K494_E0.6190.81
481_C510_E0.6190.81
237_G242_A0.6170.81
38_L55_K0.6150.80
153_W341_L0.6130.80
503_R526_E0.6130.80
318_L322_F0.6130.80
493_Y523_Y0.6120.80
131_V384_F0.6120.80
76_F291_M0.6110.80
445_V461_V0.6070.80
234_L257_A0.6060.80
308_T368_L0.6060.80
390_Y397_L0.6050.79
429_G447_E0.6040.79
523_Y527_R0.6030.79
450_R453_V0.6000.79
379_L383_L0.6000.79
313_L342_A0.5990.79
513_A516_H0.5990.79
182_F421_L0.5990.79
154_L343_Q0.5980.79
73_G254_A0.5980.79
505_K508_D0.5950.78
64_G67_L0.5950.78
27_K217_R0.5950.78
150_A337_I0.5940.78
44_G47_T0.5940.78
296_L300_Q0.5940.78
297_I301_Q0.5930.78
411_Q417_C0.5930.78
48_P51_V0.5930.78
162_V251_A0.5910.78
315_G319_A0.5910.78
520_E523_Y0.5900.78
510_E525_T0.5900.78
94_A98_V0.5900.78
525_T530_N0.5890.78
193_I197_I0.5880.77
129_T347_F0.5880.77
308_T322_F0.5880.77
314_F406_I0.5860.77
66_I250_F0.5860.77
50_F98_V0.5850.77
340_S344_I0.5850.77
447_E463_A0.5850.77
198_A485_L0.5840.77
470_N477_A0.5840.77
134_R138_E0.5830.77
219_A227_F0.5830.77
479_L483_K0.5830.77
502_A507_P0.5820.77
363_Q367_N0.5810.77
474_M477_A0.5800.76
38_L496_G0.5790.76
232_L277_L0.5780.76
77_S80_D0.5780.76
410_K415_D0.5780.76
433_G445_V0.5780.76
67_L73_G0.5770.76
487_L529_A0.5770.76
505_K521_V0.5770.76
157_E319_A0.5760.76
503_R510_E0.5760.76
293_F371_A0.5760.76
408_E416_I0.5740.76
90_P94_A0.5740.76
317_S342_A0.5730.76
522_A527_R0.5730.76
182_F190_G0.5730.76
453_V456_L0.5700.75
434_E438_A0.5700.75
129_T291_M0.5700.75
508_D519_D0.5700.75
425_Y461_V0.5690.75
429_G434_E0.5680.75
311_I314_F0.5680.75
173_G180_V0.5680.75
16_V237_G0.5650.75
216_A265_E0.5650.75
518_D523_Y0.5650.75
89_I95_Q0.5640.75
518_D525_T0.5640.75
60_L435_K0.5620.74
164_T298_L0.5610.74
383_L391_L0.5610.74
91_G317_S0.5610.74
97_A101_L0.5600.74
501_S513_A0.5600.74
392_A396_T0.5590.74
306_L315_G0.5590.74
23_M26_N0.5590.74
129_T253_G0.5580.74
301_Q368_L0.5580.74
112_W308_T0.5580.74
289_V373_A0.5570.74
141_L388_E0.5570.74
341_L346_E0.5560.73
458_E519_D0.5560.73
132_L262_N0.5560.73
485_L507_P0.5550.73
155_I284_L0.5550.73
297_I300_Q0.5550.73
419_H425_Y0.5550.73
147_G258_G0.5540.73
109_V180_V0.5540.73
227_F230_S0.5540.73
206_V398_E0.5530.73
141_L336_T0.5530.73
239_A254_A0.5530.73
14_G52_A0.5530.73
62_E347_F0.5520.73
199_F203_M0.5510.73
167_L298_L0.5510.73
78_L243_V0.5510.73
100_T103_G0.5500.73
485_L523_Y0.5500.73
510_E521_V0.5490.73
96_I132_L0.5480.72
485_L498_I0.5480.72
343_Q348_A0.5470.72
407_E410_K0.5470.72
229_L279_D0.5460.72
211_V234_L0.5450.72
154_L346_E0.5450.72
361_L366_Q0.5430.72
16_V198_A0.5420.72
409_E416_I0.5420.72
214_I219_A0.5410.71
38_L296_L0.5410.71
423_V489_I0.5380.71
460_G466_G0.5380.71
413_P416_I0.5370.71
495_A519_D0.5370.71
340_S500_A0.5360.71
349_F373_A0.5360.71
35_G285_F0.5350.71
417_C483_K0.5340.70
95_Q157_E0.5340.70
128_S153_W0.5330.70
409_E415_D0.5320.70
249_S252_L0.5320.70
428_V488_T0.5320.70
370_L374_I0.5320.70
96_I122_L0.5310.70
480_E490_P0.5310.70
101_L392_A0.5310.70
74_L270_A0.5300.70
421_L424_G0.5300.70
40_G44_G0.5300.70
499_V503_R0.5290.70
331_Q335_L0.5280.70
475_Q478_H0.5280.70
493_Y496_G0.5270.69
93_I96_I0.5260.69
130_V282_A0.5260.69
348_A369_V0.5260.69
503_R516_H0.5250.69
20_I328_G0.5250.69
32_P338_A0.5250.69
95_Q347_F0.5240.69
136_L281_F0.5240.69
495_A520_E0.5240.69
205_L260_V0.5240.69
43_A48_P0.5230.69
437_L461_V0.5230.69
35_G381_P0.5230.69
525_T529_A0.5230.69
472_E476_L0.5220.69
107_S121_G0.5220.69
317_S321_F0.5210.69
245_L490_P0.5210.69
147_G424_G0.5210.69
189_M195_K0.5200.68
386_L391_L0.5200.68
67_L165_L0.5190.68
181_G362_P0.5190.68
127_A319_A0.5190.68
249_S255_F0.5170.68
69_M251_A0.5170.68
218_S227_F0.5170.68
134_R279_D0.5160.68
242_A248_V0.5160.68
182_F197_I0.5160.68
429_G436_L0.5160.68
103_G315_G0.5160.68
130_V283_V0.5150.68
484_W512_I0.5150.68
123_C164_T0.5150.68
426_G447_E0.5130.67
45_P466_G0.5130.67
231_V313_L0.5130.67
45_P48_P0.5130.67
211_V215_M0.5130.67
391_L396_T0.5120.67
336_T387_L0.5120.67
64_G253_G0.5120.67
66_I235_A0.5110.67
61_A72_V0.5110.67
247_D258_G0.5110.67
39_A264_S0.5110.67
302_P352_A0.5100.67
14_G57_A0.5100.67
235_A239_A0.5100.67
495_A499_V0.5090.67
102_L483_K0.5080.67
442_P445_V0.5080.67
105_A407_E0.5080.67
343_Q351_L0.5070.67
52_A57_A0.5070.67
452_R517_Y0.5070.67
304_A527_R0.5070.67
74_L259_M0.5070.67
69_M74_L0.5060.66
475_Q500_A0.5060.66
39_A246_F0.5060.66
328_G331_Q0.5050.66
247_D253_G0.5050.66
458_E526_E0.5050.66
157_E350_I0.5040.66
91_G320_A0.5040.66
102_L242_A0.5030.66
227_F266_L0.5020.66
243_V284_L0.5020.66
13_G50_F0.5020.66
96_I252_L0.5020.66
382_V386_L0.5010.66
413_P417_C0.5000.65
Legend: The i and j are positions as given in the UniProt sequence. Only predictions with Prob ≥ 0.7 are listed. For all 3L/2 predictions, click on one of the links below.

Sco = ((raw_sco - min_sco)/(avg_sco - min_sco))/2 + 0.5
Prob = P(contact | Sco, seq80/√len)
seq80 = effective number of sequences, after reducing redundancy to 80% identity

HHsearch Results:
Legend: GREMLIN results (Prob ≥ 0.7) overlaid on top PDB hits. The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on the top 10 (or top 20 if e-value < 1E-20) HHsearch results which uses the overall probability and per-site alignment prob. Inter oligomeric contacts in the pdb are in shades of red.
PDB Chains Cov % HHΔ  
4bwzA 2 0.6828 100 0.468 Contact Map
4czbA 2 0.6828 100 0.509 Contact Map
4cz8A 2 0.681 100 0.512 Contact Map
1zcdA 1 0.6093 100 0.745 Contact Map
4gx0A 3 0.4337 99.9 0.775 Contact Map
1lnqA 6 0.3889 99.9 0.776 Contact Map
3l9wA 2 0.2545 99.9 0.791 Contact Map
2aefA 2 0.2473 99.9 0.794 Contact Map
3nafA 3 0.2742 99.9 0.797 Contact Map
3mt5A 5 0.2527 99.9 0.802 Contact Map

Sequence Conservation (Image Generated using WebLogo v3)
Legend: Color is used to show Hydrophobicity (Blue: Hydrophilic, Green: Neutral and Black: Hydrophobic). Amount of gaps is represented by width.

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